Wall clock time and date at job start Tue Mar 31 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00109 * 2 1 4 4 H 1.48507 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47468 * 300.00038 * 3 2 1 6 6 H 1.48503 * 109.47092 * 60.00432 * 3 2 1 7 7 C 1.37879 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47215 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47004 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54724 * 68.37315 * 11 10 9 13 13 O 1.42104 * 110.54258 * 291.62395 * 11 10 9 14 14 N 1.65597 * 104.44868 * 179.97438 * 11 10 9 15 15 C 1.46497 * 120.00137 * 64.99861 * 14 11 10 16 16 C 1.50705 * 109.47018 * 165.00170 * 15 14 11 17 17 O 1.21285 * 120.00221 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99753 * 179.97438 * 16 15 14 19 19 C 1.39923 * 120.00001 * 174.72498 * 18 16 15 20 20 C 1.38912 * 120.05629 * 326.54410 * 19 18 16 21 21 C 1.38099 * 119.97570 * 179.67822 * 20 19 18 22 22 C 1.38267 * 120.09504 * 0.61030 * 21 20 19 23 23 C 1.38488 * 120.11579 * 359.68509 * 22 21 20 24 24 F 1.35098 * 119.98692 * 180.02562 * 23 22 21 25 25 C 1.38350 * 120.01852 * 359.97438 * 23 22 21 26 26 H 0.96994 * 119.99666 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46895 * 59.99880 * 9 7 2 28 28 H 1.09004 * 109.47081 * 300.00828 * 9 7 2 29 29 H 1.09001 * 109.47150 * 60.00072 * 10 9 7 30 30 H 1.08998 * 109.46802 * 299.99893 * 10 9 7 31 31 H 0.97004 * 120.00167 * 244.99934 * 14 11 10 32 32 H 1.08996 * 109.47096 * 285.00039 * 15 14 11 33 33 H 1.09001 * 109.47247 * 45.00087 * 15 14 11 34 34 H 0.97006 * 119.99911 * 354.72877 * 18 16 15 35 35 H 1.08004 * 120.00630 * 359.96787 * 20 19 18 36 36 H 1.08000 * 119.95043 * 180.32146 * 21 20 19 37 37 H 1.08005 * 119.94119 * 179.70176 * 22 21 20 38 38 H 1.08002 * 120.04369 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6638 -5.4201 1.2354 14 7 2.5203 -6.3927 -0.0020 15 6 3.4188 -6.5235 1.1477 16 6 4.1388 -7.8454 1.0747 17 8 3.9224 -8.6038 0.1533 18 7 5.0233 -8.1849 2.0334 19 6 5.6091 -9.4555 2.0267 20 6 4.8875 -10.5520 1.5720 21 6 5.4696 -11.8042 1.5598 22 6 6.7658 -11.9707 2.0114 23 6 7.4867 -10.8813 2.4712 24 9 8.7532 -11.0469 2.9114 25 6 6.9106 -9.6235 2.4790 26 1 -0.4849 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6044 0.8895 30 1 2.8719 -3.6044 -0.8905 31 1 2.6179 -6.9855 -0.7636 32 1 4.1465 -5.7122 1.1343 33 1 2.8388 -6.4761 2.0694 34 1 5.2537 -7.5482 2.7282 35 1 3.8731 -10.4242 1.2238 36 1 4.9099 -12.6555 1.2014 37 1 7.2169 -12.9520 2.0053 38 1 7.4726 -8.7736 2.8371 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111335481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:43 Heat of formation + Delta-G solvation = -129.609409 kcal Electronic energy + Delta-G solvation = -24657.921341 eV Core-core repulsion = 20542.046741 eV Total energy + Delta-G solvation = -4115.874600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.29004 -41.02560 -38.83887 -36.69189 -35.56300 -35.34845 -34.79336 -33.95391 -31.22716 -31.14529 -30.29855 -27.26914 -25.66627 -23.44718 -23.20658 -21.75514 -20.99806 -19.21481 -18.79781 -18.09605 -17.21720 -16.84260 -16.67101 -16.49773 -16.27755 -15.94739 -15.71047 -15.68824 -15.33258 -14.81031 -14.57266 -14.23802 -13.95747 -13.75778 -13.41774 -13.29048 -12.87937 -12.56512 -12.44080 -11.85566 -11.82011 -11.77333 -11.68142 -11.60540 -11.14010 -11.01944 -10.90709 -10.47809 -10.45900 -10.40625 -9.93082 -9.63433 -9.29403 -9.13126 -8.67232 -8.55355 -6.17277 -4.23114 0.62237 0.67286 0.75584 2.05740 2.36063 3.04283 3.20129 3.21890 3.29504 3.32240 3.86731 4.05702 4.17051 4.33180 4.34324 4.54411 4.57941 4.68702 4.85374 4.91443 4.94492 4.98749 5.18124 5.30558 5.50313 5.55852 5.63660 5.69736 5.77091 5.87338 5.97595 6.40220 6.48125 6.75306 7.00838 7.24539 7.30260 7.53819 7.75589 8.11753 8.80536 9.42031 10.93707 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.020566 B = 0.002225 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.124834 B =12582.711508 C =13659.184604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.595 3.405 12 O -0.959 6.959 13 O -0.965 6.965 14 N -1.118 6.118 15 C 0.100 3.900 16 C 0.517 3.483 17 O -0.505 6.505 18 N -0.673 5.673 19 C 0.180 3.820 20 C -0.132 4.132 21 C -0.069 4.069 22 C -0.171 4.171 23 C 0.118 3.882 24 F -0.138 7.138 25 C -0.183 4.183 26 H 0.265 0.735 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.423 0.577 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.418 0.582 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.337 -20.910 6.550 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.692 3.308 12 O -0.949 6.949 13 O -0.955 6.955 14 N -0.878 5.878 15 C -0.031 4.031 16 C 0.304 3.696 17 O -0.379 6.379 18 N -0.320 5.320 19 C 0.085 3.915 20 C -0.152 4.152 21 C -0.088 4.088 22 C -0.190 4.190 23 C 0.098 3.902 24 F -0.116 7.116 25 C -0.204 4.204 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.259 0.741 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.255 0.745 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.043 -21.390 6.039 25.770 hybrid contribution 1.564 1.339 0.146 2.064 sum 14.606 -20.051 6.184 25.566 Atomic orbital electron populations 1.69960 1.06112 1.27154 1.49498 1.25077 0.94986 0.99594 0.94891 0.86409 0.79877 0.83158 0.77792 1.19674 1.20794 1.20795 1.21024 0.93068 0.89711 1.52206 0.91982 1.18984 0.92702 0.90498 0.99043 1.30465 1.13778 1.17856 1.10174 1.05605 0.74477 0.76410 0.74257 1.93574 1.71099 1.85196 1.45065 1.93543 1.71203 1.84977 1.45781 1.55741 1.52269 1.53059 1.26743 1.21036 0.94771 0.94980 0.92283 1.20845 0.78667 0.88997 0.81117 1.90732 1.62363 1.52142 1.32619 1.43502 1.43875 1.14329 1.30275 1.17393 0.90908 0.84894 0.98313 1.21296 1.01376 0.91015 1.01556 1.20924 0.93939 0.97267 0.96685 1.21167 0.95858 0.98567 1.03424 1.17332 0.79868 0.93903 0.99102 1.91517 1.36767 1.96233 1.87104 1.20790 0.94428 0.97281 1.07934 0.92535 0.94717 0.94717 0.86264 0.85875 0.74067 0.87992 0.86498 0.74526 0.83939 0.84448 0.84590 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -13.84 9.11 -34.44 -0.31 -14.15 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.65 4.98 -27.88 -0.14 0.51 16 10 C -0.59 -10.22 6.01 37.16 0.22 -9.99 16 11 S 2.60 42.91 5.46 -107.50 -0.59 42.33 16 12 O -0.96 -19.30 18.08 -57.54 -1.04 -20.34 16 13 O -0.97 -18.38 17.50 -57.54 -1.01 -19.39 16 14 N -1.12 -13.73 5.82 -11.66 -0.07 -13.80 16 15 C 0.10 0.89 6.61 -5.19 -0.03 0.85 16 16 C 0.52 4.91 7.64 -10.98 -0.08 4.83 16 17 O -0.51 -6.45 13.43 5.55 0.07 -6.38 16 18 N -0.67 -4.66 5.34 -9.87 -0.05 -4.71 16 19 C 0.18 1.50 6.28 -83.70 -0.53 0.97 16 20 C -0.13 -1.19 8.65 -39.38 -0.34 -1.53 16 21 C -0.07 -0.51 10.04 -39.62 -0.40 -0.90 16 22 C -0.17 -1.23 10.02 -39.48 -0.40 -1.63 16 23 C 0.12 0.97 7.30 -39.45 -0.29 0.68 16 24 F -0.14 -1.23 17.27 2.25 0.04 -1.19 16 25 C -0.18 -1.38 9.94 -39.33 -0.39 -1.77 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.12 1.72 8.14 -51.92 -0.42 1.30 16 30 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16 31 H 0.42 5.18 7.66 -34.47 -0.26 4.91 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.12 0.91 7.70 -51.93 -0.40 0.51 16 34 H 0.42 1.42 8.82 -40.82 -0.36 1.06 16 35 H 0.14 1.43 6.43 -52.48 -0.34 1.09 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 350.61 15.07 5.28 5.28 Total: -1.00 -36.86 350.61 -8.71 -45.57 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.28 Total: 2.76 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.78 Total: -20.65 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.62 Total: -43.62 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -1.97 Total: -46.11 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 42.91 SS G_CDS: -0.59 Total: 42.33 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.86 -8.71 -45.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111335481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.035 kcal (2) G-P(sol) polarization free energy of solvation -36.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds