Wall clock time and date at job start Tue Mar 31 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99730 * 2 1 4 4 H 1.48498 * 109.47358 * 240.00221 * 3 2 1 5 5 H 1.48501 * 109.47245 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47076 * 120.00512 * 3 2 1 7 7 C 1.37873 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47379 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47304 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54062 * 68.37645 * 11 10 9 13 13 O 1.42095 * 110.54229 * 291.62836 * 11 10 9 14 14 N 1.65596 * 104.44930 * 180.02562 * 11 10 9 15 15 C 1.46507 * 120.00169 * 64.99991 * 14 11 10 16 16 C 1.50700 * 109.47081 * 164.99652 * 15 14 11 17 17 O 1.21286 * 120.00017 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00051 * 179.97438 * 16 15 14 19 19 C 1.40024 * 120.00268 * 184.62496 * 18 16 15 20 20 C 1.38854 * 120.04326 * 145.20843 * 19 18 16 21 21 C 1.38112 * 119.95157 * 180.20940 * 20 19 18 22 22 C 1.38475 * 120.04752 * 359.52164 * 21 20 19 23 23 F 1.35101 * 119.95723 * 180.25468 * 22 21 20 24 24 C 1.38477 * 120.08866 * 0.22937 * 22 21 20 25 25 C 1.38112 * 120.04201 * 359.97438 * 24 22 21 26 26 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46805 * 60.00448 * 9 7 2 28 28 H 1.08999 * 109.47612 * 300.00807 * 9 7 2 29 29 H 1.08999 * 109.47212 * 60.00435 * 10 9 7 30 30 H 1.09003 * 109.47426 * 300.00402 * 10 9 7 31 31 H 0.97001 * 120.00093 * 245.00057 * 14 11 10 32 32 H 1.09000 * 109.46381 * 45.00157 * 15 14 11 33 33 H 1.08990 * 109.47119 * 284.99980 * 15 14 11 34 34 H 0.97005 * 119.99296 * 4.62909 * 18 16 15 35 35 H 1.07999 * 120.02680 * 0.02562 * 20 19 18 36 36 H 1.08001 * 119.97604 * 179.79112 * 21 20 19 37 37 H 1.07997 * 119.97628 * 180.02562 * 24 22 21 38 38 H 1.08005 * 120.01816 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3383 -5.2330 -0.0013 12 8 0.6648 -5.4193 -1.2386 13 8 0.6639 -5.4200 1.2353 14 7 2.5205 -6.3926 -0.0005 15 6 3.4181 -6.5229 1.1500 16 6 4.1382 -7.8448 1.0782 17 8 3.9231 -8.6032 0.1565 18 7 5.0219 -8.1838 2.0377 19 6 5.7621 -9.3667 1.9215 20 6 7.0685 -9.4181 2.3893 21 6 7.7983 -10.5845 2.2698 22 6 7.2249 -11.7052 1.6930 23 9 7.9388 -12.8468 1.5817 24 6 5.9205 -11.6576 1.2306 25 6 5.1887 -10.4918 1.3444 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6247 -2.5572 0.8896 29 1 2.8719 -3.6044 0.8895 30 1 2.8720 -3.6043 -0.8905 31 1 2.6187 -6.9857 -0.7618 32 1 2.8373 -6.4751 2.0711 33 1 4.1458 -5.7116 1.1368 34 1 5.1450 -7.6083 2.8088 35 1 7.5146 -8.5457 2.8435 36 1 8.8156 -10.6238 2.6304 37 1 5.4749 -12.5329 0.7815 38 1 4.1712 -10.4553 0.9840 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111336428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:26 Heat of formation + Delta-G solvation = -129.225572 kcal Electronic energy + Delta-G solvation = -24619.059278 eV Core-core repulsion = 20503.201322 eV Total energy + Delta-G solvation = -4115.857956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.21118 -41.00748 -38.83697 -36.68743 -35.55338 -35.23948 -34.78103 -33.95099 -31.58508 -31.22403 -30.00918 -27.08138 -25.66180 -23.77404 -22.90296 -21.75033 -21.04079 -19.20456 -18.63100 -17.98322 -17.84858 -17.08096 -16.61792 -16.48009 -16.13849 -15.89823 -15.68886 -15.37394 -14.96299 -14.68077 -14.57022 -14.09423 -13.92383 -13.70169 -13.48714 -13.40917 -13.17015 -12.79111 -12.54777 -11.82797 -11.79792 -11.67693 -11.62374 -11.59753 -11.11316 -11.02548 -10.73919 -10.51026 -10.43881 -10.34141 -9.92038 -9.64382 -9.54409 -9.13878 -8.54470 -8.52432 -6.16719 -4.22816 0.60419 0.66707 0.79543 2.05769 2.42208 3.05615 3.18010 3.23606 3.29090 3.30381 3.89432 4.07351 4.17506 4.32918 4.34028 4.42036 4.58512 4.76994 4.86964 4.88179 4.97177 5.06279 5.18361 5.32537 5.45891 5.56169 5.67526 5.70994 5.79657 5.81968 5.93492 6.40446 6.48824 6.77846 7.02029 7.24530 7.30566 7.56955 7.75470 8.12026 8.80271 9.42156 10.94127 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.002157 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.843077 B =12978.888649 C =13878.063744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.595 3.405 12 O -0.959 6.959 13 O -0.965 6.965 14 N -1.118 6.118 15 C 0.100 3.900 16 C 0.516 3.484 17 O -0.509 6.509 18 N -0.672 5.672 19 C 0.136 3.864 20 C -0.115 4.115 21 C -0.135 4.135 22 C 0.081 3.919 23 F -0.141 7.141 24 C -0.134 4.134 25 C -0.093 4.093 26 H 0.266 0.734 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.423 0.577 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.417 0.583 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.438 -19.549 6.911 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.693 3.307 12 O -0.949 6.949 13 O -0.955 6.955 14 N -0.878 5.878 15 C -0.031 4.031 16 C 0.303 3.697 17 O -0.383 6.383 18 N -0.319 5.319 19 C 0.042 3.958 20 C -0.135 4.135 21 C -0.154 4.154 22 C 0.061 3.939 23 F -0.120 7.120 24 C -0.153 4.153 25 C -0.113 4.113 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.259 0.741 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.254 0.746 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.132 -20.062 6.371 25.353 hybrid contribution 1.410 1.096 0.065 1.787 sum 15.542 -18.966 6.435 25.351 Atomic orbital electron populations 1.69942 1.06106 1.27375 1.49296 1.25072 0.94990 0.99565 0.94879 0.86520 0.79478 0.82517 0.78673 1.20087 1.21080 1.20103 1.20946 0.92995 0.89742 1.52471 0.92089 1.18973 0.92690 0.90466 0.99029 1.30464 1.13776 1.17879 1.10155 1.05594 0.74476 0.76405 0.74250 1.93575 1.71105 1.85204 1.45063 1.93540 1.71219 1.84974 1.45793 1.55737 1.52313 1.53023 1.26737 1.21030 0.94805 0.94996 0.92222 1.20839 0.78784 0.88750 0.81331 1.90708 1.62236 1.51697 1.33654 1.43456 1.40703 1.22815 1.24925 1.17772 0.90954 0.86189 1.00872 1.20781 0.91772 0.98571 1.02407 1.20935 1.01141 0.91846 1.01503 1.17731 0.90830 0.82918 1.02396 1.91502 1.77949 1.48281 1.94243 1.21105 0.92940 0.99627 1.01666 1.21227 1.01440 0.89965 0.98648 0.92425 0.94731 0.94729 0.86277 0.85889 0.74075 0.86635 0.87956 0.74599 0.84387 0.84271 0.84309 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.52 -13.86 9.11 -34.44 -0.31 -14.17 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 10 C -0.59 -10.20 6.01 37.15 0.22 -9.98 16 11 S 2.60 42.90 5.46 -107.50 -0.59 42.31 16 12 O -0.96 -19.33 18.08 -57.54 -1.04 -20.37 16 13 O -0.97 -18.37 17.49 -57.54 -1.01 -19.37 16 14 N -1.12 -13.73 5.82 -11.65 -0.07 -13.79 16 15 C 0.10 0.88 6.61 -5.19 -0.03 0.85 16 16 C 0.52 4.85 7.74 -10.99 -0.09 4.76 16 17 O -0.51 -6.47 13.17 5.55 0.07 -6.39 16 18 N -0.67 -4.43 5.34 -9.85 -0.05 -4.48 16 19 C 0.14 1.08 6.30 -83.66 -0.53 0.55 16 20 C -0.11 -0.71 9.96 -39.40 -0.39 -1.11 16 21 C -0.13 -0.92 10.02 -39.54 -0.40 -1.31 16 22 C 0.08 0.69 7.30 -39.41 -0.29 0.40 16 23 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 24 C -0.13 -1.13 10.02 -39.54 -0.40 -1.53 16 25 C -0.09 -0.85 8.70 -39.40 -0.34 -1.20 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.12 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.12 1.93 8.14 -51.92 -0.42 1.50 16 31 H 0.42 5.19 7.67 -34.47 -0.26 4.93 16 32 H 0.12 0.88 7.69 -51.93 -0.40 0.48 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.42 1.25 8.82 -40.82 -0.36 0.89 16 35 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 36 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.15 1.55 6.23 -52.48 -0.33 1.22 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -36.88 350.32 -8.71 -45.59 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.27 Total: 2.71 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.79 Total: -20.71 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.62 Total: -43.35 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.97 Total: -46.14 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 42.90 SS G_CDS: -0.59 Total: 42.31 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.88 -8.71 -45.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111336428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.632 kcal (2) G-P(sol) polarization free energy of solvation -36.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds