Wall clock time and date at job start Tue Mar 31 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47495 * 2 1 4 4 N 1.46505 * 109.47098 * 120.00179 * 2 1 3 5 5 S 1.65602 * 119.99907 * 95.82121 * 4 2 1 6 6 O 1.42104 * 106.40177 * 177.97439 * 5 4 2 7 7 O 1.42096 * 106.40396 * 310.89321 * 5 4 2 8 8 C 1.76204 * 107.21634 * 64.43808 * 5 4 2 9 9 C 1.37841 * 119.93546 * 244.62880 * 8 5 4 10 10 C 1.39697 * 119.87171 * 179.79419 * 9 8 5 11 11 C 1.47610 * 120.12047 * 180.23018 * 10 9 8 12 12 O 1.21607 * 120.00291 * 0.25103 * 11 10 9 13 13 N 1.34779 * 119.99727 * 180.25155 * 11 10 9 14 14 C 1.36887 * 120.00042 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00430 * 359.97438 * 14 13 11 16 16 C 1.39037 * 120.00083 * 179.97438 * 14 13 11 17 17 N 1.31371 * 120.00025 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00037 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47257 * 60.00698 * 18 16 14 20 20 H 1.48502 * 109.46996 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47433 * 299.99969 * 18 16 14 22 22 C 1.39738 * 119.75196 * 0.48430 * 10 9 8 23 23 C 1.37801 * 119.86891 * 359.74497 * 22 10 9 24 24 C 1.38649 * 119.93659 * 64.90462 * 8 5 4 25 25 F 1.35092 * 119.87621 * 0.02562 * 24 8 5 26 26 H 1.09000 * 109.46909 * 59.99541 * 1 2 3 27 27 H 1.09000 * 109.47756 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47184 * 300.00224 * 1 2 3 29 29 H 1.09005 * 109.47404 * 239.99718 * 2 1 3 30 30 H 1.09000 * 109.46988 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47179 * 300.00191 * 3 2 1 32 32 H 1.09002 * 109.46954 * 60.00429 * 3 2 1 33 33 H 0.96998 * 119.99887 * 275.82380 * 4 2 1 34 34 H 1.08005 * 120.06086 * 359.97438 * 9 8 5 35 35 H 0.97007 * 120.00031 * 0.02562 * 13 11 10 36 36 H 0.97001 * 120.00102 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.06518 * 179.73369 * 22 10 9 38 38 H 1.08006 * 119.93014 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 16 2.4314 -2.2924 1.1168 6 8 2.9049 -2.6491 2.4083 7 8 1.3501 -2.9544 0.4752 8 6 3.8108 -2.4218 0.0280 9 6 3.6874 -3.1108 -1.1595 10 6 4.7806 -3.2090 -2.0237 11 6 4.6531 -3.9411 -3.2991 12 8 3.5939 -4.4562 -3.6013 13 7 5.7109 -4.0386 -4.1287 14 6 5.5926 -4.7170 -5.3117 15 1 4.6519 -5.1746 -5.5802 16 6 6.6836 -4.8171 -6.1678 17 7 7.8281 -4.2610 -5.8411 18 14 6.5224 -5.7436 -7.7818 19 1 5.4702 -5.1076 -8.6147 20 1 7.8182 -5.7051 -8.5061 21 1 6.1510 -7.1550 -7.5075 22 6 5.9966 -2.6160 -1.6738 23 6 6.1096 -1.9338 -0.4819 24 6 5.0197 -1.8354 0.3700 25 9 5.1366 -1.1666 1.5379 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4423 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 2.0996 -0.2098 2.0346 34 1 2.7466 -3.5713 -1.4226 35 1 6.5560 -3.6279 -3.8875 36 1 8.5893 -4.3312 -6.4382 37 1 6.8462 -2.6925 -2.3362 38 1 7.0489 -1.4748 -0.2107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126765532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:52 Heat of formation + Delta-G solvation = -135.553905 kcal Electronic energy + Delta-G solvation = -26227.881706 eV Core-core repulsion = 22111.749333 eV Total energy + Delta-G solvation = -4116.132373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.21858 -39.47576 -37.49706 -37.36131 -36.84475 -35.87892 -34.29470 -31.98170 -31.15852 -30.78313 -30.41625 -27.37780 -25.53456 -23.63450 -23.09339 -21.72032 -20.45650 -19.46993 -18.63020 -17.94061 -17.62715 -17.11245 -16.71047 -16.11377 -15.82508 -15.59278 -14.98022 -14.77466 -14.50469 -14.25335 -14.02869 -13.81231 -13.63548 -13.38647 -13.30466 -13.05134 -12.70539 -12.44275 -12.24188 -12.10337 -12.03490 -11.85319 -11.75040 -11.70515 -11.63635 -11.24075 -11.12543 -10.84497 -10.60150 -10.44239 -9.82229 -9.78832 -9.54887 -8.72550 -8.71836 -8.26949 -6.74551 -4.05304 0.27864 0.60717 1.03041 2.78166 2.99208 3.12215 3.16144 3.18374 3.62237 3.91994 3.95725 4.17047 4.30199 4.53836 4.60890 4.69129 4.83894 4.92621 5.06281 5.10041 5.13624 5.29830 5.35051 5.40045 5.55684 5.62709 5.66048 5.83586 5.85968 5.93793 6.02385 6.11799 6.22096 6.36458 6.72557 6.78491 7.26090 7.76236 8.29798 8.87351 9.19840 9.76097 10.41551 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.003266 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.673533 B = 8571.672852 C = 8970.995625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.143 3.857 3 C -0.159 4.159 4 N -1.111 6.111 5 S 2.698 3.302 6 O -0.954 6.954 7 O -0.946 6.946 8 C -0.719 4.719 9 C 0.042 3.958 10 C -0.117 4.117 11 C 0.459 3.541 12 O -0.591 6.591 13 N -0.536 5.536 14 C -0.293 4.293 15 H 0.111 0.889 16 C 0.025 3.975 17 N -0.885 5.885 18 Si 0.939 3.061 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.029 4.029 23 C -0.169 4.169 24 C 0.183 3.817 25 F -0.127 7.127 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.418 0.582 34 H 0.163 0.837 35 H 0.393 0.607 36 H 0.279 0.721 37 H 0.146 0.854 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 11.934 11.645 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.037 3.963 3 C -0.217 4.217 4 N -0.871 5.871 5 S 2.786 3.214 6 O -0.944 6.944 7 O -0.936 6.936 8 C -0.805 4.805 9 C 0.022 3.978 10 C -0.122 4.122 11 C 0.247 3.753 12 O -0.478 6.478 13 N -0.170 5.170 14 C -0.422 4.422 15 H 0.129 0.871 16 C -0.179 4.179 17 N -0.523 5.523 18 Si 0.764 3.236 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.195 1.195 22 C -0.049 4.049 23 C -0.188 4.188 24 C 0.161 3.839 25 F -0.105 7.105 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.252 0.748 34 H 0.180 0.820 35 H 0.228 0.772 36 H 0.089 0.911 37 H 0.163 0.837 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.084 10.820 11.570 16.969 hybrid contribution 1.420 0.466 -0.560 1.596 sum -4.664 11.286 11.010 16.442 Atomic orbital electron populations 1.22324 0.94659 1.03732 1.02359 1.20804 0.94836 0.94273 0.86406 1.22098 1.01887 0.94938 1.02809 1.55663 1.81430 1.31268 1.18731 1.01864 0.73740 0.72441 0.73326 1.93612 1.81869 1.81202 1.37714 1.93610 1.50848 1.72027 1.77127 1.30796 1.16662 1.16696 1.16376 1.20956 0.99804 0.89125 0.87959 1.20569 0.93822 1.00545 0.97309 1.17468 0.85791 0.87323 0.84709 1.90647 1.27957 1.52894 1.76277 1.41919 1.11494 1.46054 1.17497 1.19879 0.99389 1.28834 0.94104 0.87099 1.25442 0.94542 0.97485 1.00453 1.69568 1.01819 1.42480 1.38472 0.85779 0.77720 0.79904 0.80165 1.19455 1.20657 1.19454 1.21625 0.97343 0.91260 0.94645 1.21092 0.98465 1.03921 0.95324 1.17067 0.93548 0.91621 0.81671 1.91556 1.96480 1.77415 1.45072 0.91324 0.90886 0.92155 0.89406 0.91876 0.91014 0.91925 0.74768 0.81963 0.77183 0.91086 0.83658 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.52 37.16 0.35 -1.15 16 2 C 0.14 1.33 3.39 -67.93 -0.23 1.10 16 3 C -0.16 -1.14 9.45 37.16 0.35 -0.79 16 4 N -1.11 -11.10 5.47 -4.89 -0.03 -11.13 16 5 S 2.70 37.59 5.29 -107.50 -0.57 37.02 16 6 O -0.95 -15.44 17.42 -57.17 -1.00 -16.43 16 7 O -0.95 -15.36 16.32 -57.17 -0.93 -16.30 16 8 C -0.72 -10.87 5.71 -39.57 -0.23 -11.09 16 9 C 0.04 0.74 9.09 -39.18 -0.36 0.38 16 10 C -0.12 -2.20 5.87 -104.97 -0.62 -2.82 16 11 C 0.46 10.75 7.72 -12.44 -0.10 10.65 16 12 O -0.59 -15.87 15.92 5.27 0.08 -15.78 16 13 N -0.54 -12.89 5.23 -11.90 -0.06 -12.96 16 14 C -0.29 -7.66 9.68 -15.00 -0.15 -7.81 16 15 H 0.11 3.03 7.15 -52.49 -0.38 2.66 16 16 C 0.03 0.62 5.50 -17.45 -0.10 0.53 16 17 N -0.88 -22.11 13.05 55.50 0.72 -21.39 16 18 Si 0.94 19.55 29.55 -169.99 -5.02 14.53 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 22 C -0.03 -0.44 9.54 -39.18 -0.37 -0.82 16 23 C -0.17 -2.25 10.01 -39.58 -0.40 -2.64 16 24 C 0.18 2.59 7.22 -39.26 -0.28 2.31 16 25 F -0.13 -1.69 16.26 2.25 0.04 -1.65 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.88 7.82 -51.93 -0.41 0.48 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.42 3.21 8.85 -34.47 -0.30 2.91 16 34 H 0.16 2.95 6.91 -52.48 -0.36 2.59 16 35 H 0.39 8.74 5.92 -40.82 -0.24 8.50 16 36 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.15 2.07 6.40 -52.49 -0.34 1.74 16 38 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -32.29 346.37 -7.76 -40.05 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.10 Total: 10.96 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -2.11 Total: -12.14 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.64 Total: -45.47 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.85 Total: -48.51 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 37.59 SS G_CDS: -0.57 Total: 37.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.29 -7.76 -40.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126765532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.503 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds