Wall clock time and date at job start Tue Mar 31 2020 05:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86795 * 119.99774 * 2 1 4 4 H 1.48499 * 109.47125 * 269.99887 * 3 2 1 5 5 H 1.48499 * 109.47295 * 30.00534 * 3 2 1 6 6 H 1.48503 * 109.46802 * 150.00389 * 3 2 1 7 7 C 1.39009 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99767 * 179.97438 * 7 2 1 9 9 N 1.36886 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00110 * 179.97438 * 9 7 2 11 11 O 1.21753 * 119.99805 * 0.02562 * 10 9 7 12 12 C 1.46453 * 120.00486 * 180.02562 * 10 9 7 13 13 S 1.75835 * 125.46089 * 0.02901 * 12 10 9 14 14 C 1.70609 * 91.56738 * 179.80275 * 13 12 10 15 15 C 1.33844 * 110.97363 * 0.31328 * 14 13 12 16 16 C 1.36768 * 125.46445 * 180.02562 * 12 10 9 17 17 S 1.76196 * 123.36031 * 0.05826 * 16 12 10 18 18 O 1.42098 * 106.40526 * 48.52656 * 17 16 12 19 19 O 1.42103 * 106.39879 * 181.44379 * 17 16 12 20 20 N 1.65594 * 107.21884 * 294.98553 * 17 16 12 21 21 C 1.47031 * 125.64798 * 269.69004 * 20 17 16 22 22 C 1.54314 * 107.27651 * 180.96765 * 21 20 17 23 23 C 1.55162 * 102.86282 * 22.52964 * 22 21 20 24 24 C 1.47426 * 125.65239 * 90.00096 * 20 17 16 25 25 H 0.96999 * 120.00029 * 359.97438 * 1 2 3 26 26 H 0.97002 * 120.00400 * 0.02562 * 9 7 2 27 27 H 1.08001 * 124.51776 * 180.20765 * 14 13 12 28 28 H 1.08002 * 122.45107 * 179.89615 * 15 14 13 29 29 H 1.09001 * 109.88162 * 300.51740 * 21 20 17 30 30 H 1.09003 * 109.87920 * 61.67929 * 21 20 17 31 31 H 1.08997 * 110.92303 * 264.11290 * 22 21 20 32 32 H 1.09000 * 110.58774 * 140.78399 * 22 21 20 33 33 H 1.09000 * 111.00205 * 206.22753 * 23 22 21 34 34 H 1.09000 * 111.00351 * 82.37520 * 23 22 21 35 35 H 1.08996 * 110.36446 * 274.67554 * 24 20 17 36 36 H 1.09005 * 110.36291 * 36.88325 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0091 -1.2039 -0.0005 8 1 3.0891 -1.2038 -0.0010 9 7 1.3246 -2.3893 -0.0005 10 6 1.9985 -3.5565 -0.0016 11 8 3.2160 -3.5565 -0.0021 12 6 1.2662 -4.8249 -0.0021 13 16 -0.4841 -4.9923 -0.0023 14 6 -0.3682 -6.6944 -0.0089 15 6 0.9112 -7.0875 -0.0039 16 6 1.8342 -6.0690 -0.0027 17 16 3.5753 -6.3393 -0.0013 18 8 4.1094 -5.5096 1.0212 19 8 3.7628 -7.7474 -0.0367 20 7 4.1635 -5.7530 -1.4340 21 6 4.3082 -6.5211 -2.6793 22 6 4.9164 -5.5732 -3.7343 23 6 5.6123 -4.4915 -2.8665 24 6 4.6348 -4.3763 -1.6703 25 1 -0.4850 0.8400 0.0004 26 1 0.3546 -2.3894 -0.0005 27 1 -1.2144 -7.3654 -0.0145 28 1 1.1975 -8.1289 -0.0052 29 1 4.9709 -7.3709 -2.5158 30 1 3.3316 -6.8693 -3.0157 31 1 4.1372 -5.1286 -4.3533 32 1 5.6448 -6.1014 -4.3496 33 1 5.6847 -3.5462 -3.4044 34 1 6.5953 -4.8280 -2.5369 35 1 3.7973 -3.7273 -1.9259 36 1 5.1532 -3.9964 -0.7899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126805546.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:17 Heat of formation + Delta-G solvation = -63.627839 kcal Electronic energy + Delta-G solvation = -24942.525454 eV Core-core repulsion = 21259.892111 eV Total energy + Delta-G solvation = -3682.633343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.79078 -37.85956 -37.05625 -36.43446 -35.13309 -34.32004 -31.74057 -30.53017 -29.56455 -28.54486 -26.02104 -24.31478 -22.17261 -21.03668 -20.76690 -19.90732 -18.69363 -18.06082 -17.62503 -16.90820 -16.29498 -15.68169 -15.34680 -14.83833 -14.54054 -14.11481 -14.09075 -13.84587 -13.51248 -13.36224 -12.86386 -12.72816 -12.47235 -12.29162 -12.16283 -11.86771 -11.55204 -11.40785 -11.33893 -11.07036 -11.05003 -11.01166 -10.70882 -10.60163 -10.53914 -10.41550 -10.26315 -9.78564 -8.84844 -8.78689 -8.53042 -8.36298 -8.26626 -6.89773 -4.12110 0.60582 1.01274 1.86695 2.19764 2.41552 2.99935 3.06885 3.12784 3.61028 3.84050 3.91763 4.33641 4.55957 4.72527 4.90903 5.00215 5.09262 5.15718 5.39710 5.58733 5.67510 5.70553 5.82633 5.87860 5.99749 6.05721 6.14356 6.26000 6.27553 6.41529 6.50919 6.67397 6.88619 7.02878 7.12001 7.61123 8.15454 8.72718 9.02612 9.62556 10.24890 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.005805 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.025742 B = 4822.573948 C = 6276.103366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.024 3.976 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.274 4.274 8 H 0.121 0.879 9 N -0.521 5.521 10 C 0.450 3.550 11 O -0.555 6.555 12 C -0.083 4.083 13 S 0.204 5.796 14 C -0.283 4.283 15 C -0.063 4.063 16 C -0.679 4.679 17 S 2.736 3.264 18 O -0.925 6.925 19 O -0.982 6.982 20 N -1.001 6.001 21 C 0.121 3.879 22 C -0.127 4.127 23 C -0.139 4.139 24 C 0.144 3.856 25 H 0.283 0.717 26 H 0.393 0.607 27 H 0.165 0.835 28 H 0.148 0.852 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 -8.008 -6.109 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.183 4.183 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.405 4.405 8 H 0.138 0.862 9 N -0.153 5.153 10 C 0.239 3.761 11 O -0.442 6.442 12 C -0.208 4.208 13 S 0.470 5.530 14 C -0.421 4.421 15 C -0.093 4.093 16 C -0.779 4.779 17 S 2.824 3.176 18 O -0.915 6.915 19 O -0.973 6.973 20 N -0.840 5.840 21 C -0.005 4.005 22 C -0.166 4.166 23 C -0.179 4.179 24 C 0.020 3.980 25 H 0.093 0.907 26 H 0.227 0.773 27 H 0.182 0.818 28 H 0.165 0.835 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.719 -7.270 -5.344 9.051 hybrid contribution -0.268 -0.215 -0.276 0.441 sum 0.451 -7.485 -5.620 9.371 Atomic orbital electron populations 1.69612 1.06439 1.29720 1.44851 1.25586 0.95810 1.00759 0.96137 0.85653 0.79486 0.79272 0.78917 1.19769 1.20432 1.18637 1.20109 0.94340 0.81535 1.44555 0.86178 1.41963 1.09458 1.04913 1.58993 1.16639 0.87864 0.81718 0.89925 1.90830 1.10934 1.85248 1.57209 1.25099 0.96987 0.97383 1.01332 1.83129 1.03061 1.00498 1.66351 1.25075 1.01402 1.00377 1.15219 1.19454 0.90847 0.99515 0.99452 1.30499 1.27849 0.97117 1.22450 1.00626 0.72764 0.71984 0.72180 1.93614 1.76406 1.68119 1.53365 1.93499 1.85880 1.31083 1.86801 1.58475 1.78038 1.21170 1.26291 1.21636 1.00181 0.94423 0.84289 1.22593 0.99949 0.97035 0.97037 1.22941 0.98955 0.98830 0.97156 1.22104 0.96856 0.81302 0.97745 0.90705 0.77258 0.81763 0.83457 0.91611 0.92420 0.90905 0.90831 0.90432 0.91336 0.90402 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.13 13.05 55.50 0.72 -20.40 16 2 C 0.02 0.56 5.50 -17.45 -0.10 0.47 16 3 Si 0.94 18.67 29.55 -169.99 -5.02 13.65 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 7 C -0.27 -6.82 9.68 -15.01 -0.15 -6.96 16 8 H 0.12 3.05 7.15 -52.49 -0.38 2.67 16 9 N -0.52 -12.37 5.27 -12.23 -0.06 -12.43 16 10 C 0.45 10.43 7.56 -12.95 -0.10 10.33 16 11 O -0.55 -13.51 7.60 -18.26 -0.14 -13.65 16 12 C -0.08 -1.68 6.45 -36.81 -0.24 -1.92 16 13 S 0.20 3.35 22.15 -107.50 -2.38 0.97 16 14 C -0.28 -4.19 10.92 29.19 0.32 -3.87 16 15 C -0.06 -1.05 9.70 -41.41 -0.40 -1.45 16 16 C -0.68 -13.12 5.94 -40.40 -0.24 -13.36 16 17 S 2.74 54.47 5.35 -107.50 -0.57 53.90 16 18 O -0.92 -21.78 15.03 -66.74 -1.00 -22.79 16 19 O -0.98 -19.68 16.99 -57.17 -0.97 -20.65 16 20 N -1.00 -17.55 3.67 -111.42 -0.41 -17.96 16 21 C 0.12 1.68 6.98 -3.06 -0.02 1.66 16 22 C -0.13 -1.49 6.95 -24.90 -0.17 -1.66 16 23 C -0.14 -1.84 7.08 -24.58 -0.17 -2.02 16 24 C 0.14 2.54 4.87 -2.53 -0.01 2.53 16 25 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 26 H 0.39 8.99 7.00 -40.82 -0.29 8.70 16 27 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.15 2.17 7.78 -52.49 -0.41 1.76 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.51 6.64 -51.93 -0.34 1.17 16 36 H 0.09 1.83 6.87 -51.93 -0.36 1.47 16 LS Contribution 322.30 15.07 4.86 4.86 Total: -1.00 -29.79 322.30 -10.13 -39.92 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -3.87 Total: 10.83 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -1.28 Total: -16.25 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.25 Total: -50.80 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -2.11 Total: -57.08 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Atomic # 16 Polarization: 57.83 SS G_CDS: -2.96 Total: 54.87 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.79 -10.13 -39.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126805546.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.703 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds