Wall clock time and date at job start Tue Mar 31 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47162 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54122 * 291.62427 * 11 10 9 13 13 O 1.42097 * 110.54031 * 68.37597 * 11 10 9 14 14 N 1.65601 * 104.44938 * 180.02562 * 11 10 9 15 15 C 1.46499 * 120.00334 * 64.99936 * 14 11 10 16 16 H 1.09005 * 109.46576 * 24.99784 * 15 14 11 17 17 C 1.50705 * 109.47083 * 265.00374 * 15 14 11 18 18 N 1.34778 * 119.99510 * 179.97438 * 17 15 14 19 19 O 1.21278 * 120.00200 * 359.97438 * 17 15 14 20 20 C 1.50697 * 109.47412 * 145.00123 * 15 14 11 21 21 C 1.38241 * 119.97541 * 39.72751 * 20 15 14 22 22 C 1.38192 * 120.02980 * 179.72736 * 21 20 15 23 23 C 1.38469 * 119.97129 * 0.52904 * 22 21 20 24 24 F 1.35096 * 120.02694 * 179.72826 * 23 22 21 25 25 C 1.38458 * 119.94604 * 359.74544 * 23 22 21 26 26 C 1.38199 * 119.97618 * 0.02562 * 25 23 22 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47318 * 60.00517 * 9 7 2 29 29 H 1.08996 * 109.47240 * 299.99401 * 9 7 2 30 30 H 1.09004 * 109.46930 * 60.00099 * 10 9 7 31 31 H 1.09004 * 109.47059 * 300.00497 * 10 9 7 32 32 H 0.97004 * 120.00069 * 245.00518 * 14 11 10 33 33 H 0.96995 * 120.00564 * 359.97438 * 18 17 15 34 34 H 0.97000 * 119.99615 * 179.97438 * 18 17 15 35 35 H 1.08007 * 119.98317 * 359.97438 * 21 20 15 36 36 H 1.07996 * 120.01925 * 180.29071 * 22 21 20 37 37 H 1.08000 * 120.01591 * 179.97438 * 25 23 22 38 38 H 1.08002 * 119.98766 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 16 1.3382 -5.2331 -0.0034 12 8 0.6647 -5.4204 1.2337 13 8 0.6639 -5.4189 -1.2402 14 7 2.5204 -6.3927 -0.0038 15 6 3.4188 -6.5234 1.1460 16 1 2.9279 -6.1316 2.0369 17 6 4.6834 -5.7459 0.8864 18 7 5.6615 -5.7212 1.8133 19 8 4.8209 -5.1425 -0.1566 20 6 3.7569 -7.9768 1.3567 21 6 3.9903 -8.7964 0.2683 22 6 4.3060 -10.1280 0.4604 23 6 4.3778 -10.6438 1.7435 24 9 4.6810 -11.9467 1.9324 25 6 4.1383 -9.8232 2.8327 26 6 3.8274 -8.4907 2.6382 27 1 -0.4849 0.8400 0.0004 28 1 0.6248 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 2.8719 -3.6051 0.8873 31 1 2.8720 -3.6035 -0.8927 32 1 2.6181 -6.9855 -0.7654 33 1 5.5514 -6.2035 2.6476 34 1 6.4756 -5.2211 1.6460 35 1 3.9298 -8.3950 -0.7326 36 1 4.4929 -10.7671 -0.3898 37 1 4.1936 -10.2244 3.8339 38 1 3.6410 -7.8504 3.4877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152519320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:51 Heat of formation + Delta-G solvation = -134.954926 kcal Electronic energy + Delta-G solvation = -26002.883848 eV Core-core repulsion = 21886.777449 eV Total energy + Delta-G solvation = -4116.106399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.27850 -40.53620 -38.88966 -36.64254 -35.54249 -35.18792 -33.92796 -33.83069 -31.63857 -31.11221 -30.78987 -26.83037 -25.55168 -23.58350 -22.61812 -21.60543 -20.78716 -19.13502 -18.27409 -17.96433 -17.68247 -17.29052 -16.65554 -16.47875 -16.05315 -15.94725 -15.42061 -15.34738 -14.81217 -14.71546 -14.49854 -14.35756 -13.97955 -13.75197 -13.37826 -13.24477 -12.73867 -12.49241 -12.31206 -11.70666 -11.64892 -11.59854 -11.54334 -11.44734 -11.04715 -10.94872 -10.83824 -10.36446 -10.33047 -9.86953 -9.84852 -9.57718 -9.51646 -9.05249 -8.98504 -8.46826 -6.09048 -4.13719 0.56166 0.76071 0.79746 2.36694 2.84587 3.01931 3.28641 3.34520 3.37575 3.47553 3.81958 4.08123 4.18344 4.27894 4.40869 4.44180 4.58318 4.65444 4.73747 4.81010 4.94487 5.26193 5.29413 5.44002 5.50201 5.66448 5.71060 5.74734 5.90596 6.00042 6.39670 6.53349 6.61906 6.85534 7.08246 7.34431 7.39866 7.85251 8.02767 8.22423 8.90033 9.50608 11.02113 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.022770 B = 0.003077 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.399707 B = 9097.950630 C = 9705.993777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.577 4.577 11 S 2.587 3.413 12 O -0.966 6.966 13 O -0.960 6.960 14 N -1.102 6.102 15 C 0.176 3.824 16 H 0.131 0.869 17 C 0.499 3.501 18 N -0.850 5.850 19 O -0.513 6.513 20 C -0.098 4.098 21 C -0.072 4.072 22 C -0.148 4.148 23 C 0.102 3.898 24 F -0.139 7.139 25 C -0.149 4.149 26 C -0.078 4.078 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.112 0.888 31 H 0.131 0.869 32 H 0.416 0.584 33 H 0.401 0.599 34 H 0.405 0.595 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.446 -20.525 6.763 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.711 4.711 11 S 2.686 3.314 12 O -0.956 6.956 13 O -0.951 6.951 14 N -0.856 5.856 15 C 0.063 3.937 16 H 0.149 0.851 17 C 0.280 3.720 18 N -0.415 5.415 19 O -0.386 6.386 20 C -0.100 4.100 21 C -0.091 4.091 22 C -0.167 4.167 23 C 0.083 3.917 24 F -0.118 7.118 25 C -0.167 4.167 26 C -0.096 4.096 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.130 0.870 31 H 0.149 0.851 32 H 0.251 0.749 33 H 0.229 0.771 34 H 0.237 0.763 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.212 -20.223 6.165 23.931 hybrid contribution 1.493 0.673 0.055 1.639 sum 12.705 -19.550 6.220 24.131 Atomic orbital electron populations 1.69956 1.06085 1.27116 1.49859 1.25064 0.94964 0.99488 0.95003 0.86473 0.79682 0.82881 0.78256 1.20471 1.21060 1.19799 1.21012 0.93127 0.89683 1.51745 0.91999 1.18987 0.92669 0.90696 0.98781 1.30395 1.13144 1.16881 1.10658 1.05834 0.74546 0.76765 0.74300 1.93540 1.71279 1.85111 1.45670 1.93562 1.71343 1.85248 1.44925 1.55763 1.50661 1.52883 1.26315 1.19491 0.89776 0.92696 0.91751 0.85124 1.21061 0.85482 0.81232 0.84228 1.43767 1.20841 1.55619 1.21227 1.90818 1.79473 1.43057 1.25285 1.19631 1.02296 0.94009 0.94057 1.20870 0.96325 0.92483 0.99398 1.21153 1.03101 0.96450 0.96019 1.17793 1.00945 0.78569 0.94403 1.91515 1.90546 1.33609 1.96085 1.21136 1.02914 0.93950 0.98742 1.20943 0.97408 0.94788 0.96497 0.92589 0.94834 0.94938 0.86952 0.85120 0.74879 0.77118 0.76329 0.84531 0.84298 0.84167 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.58 -11.66 4.72 37.16 0.18 -11.49 16 11 S 2.59 46.82 5.44 -107.50 -0.58 46.23 16 12 O -0.97 -19.26 17.39 -57.54 -1.00 -20.26 16 13 O -0.96 -20.25 18.08 -57.54 -1.04 -21.29 16 14 N -1.10 -14.44 4.80 -6.88 -0.03 -14.47 16 15 C 0.18 1.86 2.82 -70.23 -0.20 1.67 16 16 H 0.13 1.25 7.34 -51.93 -0.38 0.87 16 17 C 0.50 5.62 6.87 -10.98 -0.08 5.54 16 18 N -0.85 -6.09 8.77 31.22 0.27 -5.81 16 19 O -0.51 -7.85 15.79 5.56 0.09 -7.77 16 20 C -0.10 -0.83 4.75 -104.62 -0.50 -1.33 16 21 C -0.07 -0.60 9.15 -39.60 -0.36 -0.96 16 22 C -0.15 -1.15 10.03 -39.51 -0.40 -1.55 16 23 C 0.10 0.83 7.30 -39.42 -0.29 0.54 16 24 F -0.14 -1.26 17.27 2.25 0.04 -1.22 16 25 C -0.15 -1.00 10.03 -39.51 -0.40 -1.39 16 26 C -0.08 -0.51 9.51 -39.59 -0.38 -0.89 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.11 2.06 7.71 -51.92 -0.40 1.66 16 31 H 0.13 2.61 7.80 -51.92 -0.41 2.20 16 32 H 0.42 4.67 7.03 -34.47 -0.24 4.43 16 33 H 0.40 1.63 8.56 -40.82 -0.35 1.28 16 34 H 0.41 2.62 8.93 -40.82 -0.36 2.25 16 35 H 0.14 1.04 6.80 -52.48 -0.36 0.68 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.14 0.57 8.04 -52.49 -0.42 0.15 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -37.99 347.04 -8.43 -46.42 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.15 Total: 5.05 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -2.96 Total: -22.61 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.98 Total: -46.29 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -1.95 Total: -49.31 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 46.82 SS G_CDS: -0.58 Total: 46.23 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.99 -8.43 -46.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152519320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.537 kcal (2) G-P(sol) polarization free energy of solvation -37.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds