Wall clock time and date at job start Tue Mar 31 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47171 * 69.51677 * 3 2 1 5 5 N 1.46506 * 109.47320 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46956 * 89.99765 * 11 9 7 13 13 H 1.48497 * 109.47226 * 210.00189 * 11 9 7 14 14 H 1.48501 * 109.47027 * 329.99834 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 N 1.46491 * 109.46957 * 179.72354 * 17 15 5 19 19 N 1.37661 * 121.65312 * 270.02278 * 18 17 15 20 20 C 1.29103 * 118.66037 * 179.97438 * 19 18 17 21 21 Cl 1.73594 * 127.13419 * 179.97438 * 20 19 18 22 22 S 1.77307 * 105.72958 * 359.97438 * 20 19 18 23 23 C 1.34687 * 121.65584 * 89.73958 * 18 17 15 24 24 O 1.21846 * 127.72046 * 0.02562 * 23 18 17 25 25 H 1.08997 * 109.47542 * 309.51408 * 3 2 1 26 26 H 1.09004 * 109.47171 * 189.51459 * 3 2 1 27 27 H 1.08994 * 109.47354 * 59.99917 * 4 3 2 28 28 H 1.09001 * 109.47139 * 299.99492 * 4 3 2 29 29 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 30 30 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 31 31 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 33 33 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.5039 -1.3513 5 7 4.5833 -0.5038 -1.3511 6 6 5.3157 0.6848 -1.7948 7 6 5.5671 0.5953 -3.2780 8 1 5.2160 -0.2611 -3.8345 9 6 6.2453 1.6068 -3.9245 10 7 6.6732 2.6495 -3.2468 11 14 6.5563 1.4962 -5.7632 12 1 5.4264 2.1234 -6.4949 13 1 7.8169 2.2071 -6.0956 14 1 6.6727 0.0701 -6.1606 15 6 5.2572 -1.5972 -0.9426 16 8 6.4700 -1.5969 -0.9421 17 6 4.5037 -2.8221 -0.4921 18 7 5.4558 -3.8669 -0.1074 19 7 5.9258 -4.7865 -1.0175 20 6 6.7641 -5.6825 -0.6158 21 17 7.4914 -6.9388 -1.5677 22 16 7.0183 -5.3637 1.1097 23 6 5.9189 -3.9720 1.1530 24 8 5.6433 -3.2692 2.1094 25 1 2.9717 -0.6530 0.7928 26 1 2.9709 1.0144 0.1699 27 1 2.7546 0.1498 -2.1440 28 1 2.7554 -1.5176 -1.5212 29 1 4.7265 1.5762 -1.5793 30 1 6.2681 0.7426 -1.2677 31 1 7.1500 3.3612 -3.7017 32 1 3.8769 -2.5690 0.3631 33 1 3.8773 -3.1836 -1.3074 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191515366.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:36 Heat of formation + Delta-G solvation = 28.405499 kcal Electronic energy + Delta-G solvation = -23040.363232 eV Core-core repulsion = 19256.136704 eV Total energy + Delta-G solvation = -3784.226528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.034 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.95358 -39.17507 -38.15852 -37.42190 -36.94343 -35.41604 -33.37380 -32.78848 -30.98069 -29.13084 -26.99224 -25.28096 -24.16903 -23.18139 -21.37892 -19.93976 -18.93499 -17.86927 -17.71125 -17.14019 -16.58016 -16.21188 -15.88546 -15.77045 -15.15672 -14.84043 -14.76844 -14.13373 -14.07659 -13.82708 -13.63153 -13.23774 -12.71630 -12.54969 -12.48731 -12.28256 -12.06924 -11.98740 -11.81149 -11.37017 -11.08049 -10.96518 -10.77369 -10.68902 -10.38434 -10.28619 -10.17009 -9.80179 -9.27354 -8.88904 -8.53626 -8.03652 -6.15397 -4.20583 -0.10725 0.53975 0.72569 0.99362 1.63302 2.43009 2.64667 2.74899 2.98596 3.24534 3.32223 3.35114 3.47171 4.03199 4.21282 4.35841 4.67459 4.81468 4.89685 5.00089 5.04345 5.19389 5.22537 5.35230 5.70725 5.94674 6.70985 6.79672 6.98179 7.20566 7.29425 7.50782 7.79608 8.01669 8.08295 8.60088 8.84160 9.45232 10.92851 Molecular weight = 330.03amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.004283 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.852993 B = 6535.590210 C = 8620.214793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.053 4.053 4 C 0.113 3.887 5 N -0.589 5.589 6 C 0.246 3.754 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.494 3.506 16 O -0.517 6.517 17 C 0.105 3.895 18 N -0.403 5.403 19 N -0.201 5.201 20 C 0.124 3.876 21 Cl 0.083 6.917 22 S -0.012 6.012 23 C 0.505 3.495 24 O -0.439 6.439 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.265 0.735 32 H 0.128 0.872 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.973 -16.665 6.688 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.094 4.094 4 C -0.014 4.014 5 N -0.321 5.321 6 C 0.127 3.873 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.278 3.722 16 O -0.392 6.392 17 C -0.023 4.023 18 N -0.228 5.228 19 N -0.020 5.020 20 C -0.201 4.201 21 Cl 0.111 6.889 22 S 0.214 5.786 23 C 0.182 3.818 24 O -0.311 6.311 25 H 0.125 0.875 26 H 0.138 0.862 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.811 -16.317 7.339 18.293 hybrid contribution 0.399 0.381 -1.519 1.616 sum -3.412 -15.936 5.820 17.305 Atomic orbital electron populations 1.81223 1.12987 1.09140 1.08557 1.29029 0.95018 0.92980 0.93178 1.19904 0.81529 1.06629 1.01347 1.21411 0.81841 1.02535 0.95579 1.48194 1.05027 1.15889 1.63025 1.19422 0.92654 0.79923 0.95270 1.21378 1.37058 1.05632 0.92930 0.92272 1.24913 0.95165 0.95168 0.98637 1.69914 1.38048 1.09027 1.36088 0.86506 0.77772 0.78279 0.84954 1.20561 1.21070 1.19845 1.20320 0.88510 0.84218 0.79166 1.90746 1.13370 1.81735 1.53391 1.21935 0.90055 0.85709 1.04573 1.49812 1.41676 1.26873 1.04411 1.73571 1.11664 0.99757 1.17032 1.27520 1.00483 0.97755 0.94331 1.98476 1.78104 1.42967 1.69398 1.86921 1.52828 1.33738 1.05135 1.23187 0.84693 0.88668 0.85204 1.91001 1.59895 1.45784 1.34455 0.87535 0.86166 0.88064 0.90606 0.94329 0.93485 0.92573 0.85450 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.18 18.54 42.15 0.78 -5.40 16 2 C 0.22 2.43 15.43 -20.76 -0.32 2.11 16 3 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 4 C 0.11 1.33 5.17 -4.04 -0.02 1.31 16 5 N -0.59 -10.16 2.46 -175.06 -0.43 -10.59 16 6 C 0.25 5.62 5.16 -5.20 -0.03 5.59 16 7 C -0.53 -13.78 9.39 -34.44 -0.32 -14.11 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 11 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.49 8.79 7.74 -10.98 -0.09 8.70 16 16 O -0.52 -11.90 16.01 5.55 0.09 -11.81 16 17 C 0.11 1.32 5.01 -5.20 -0.03 1.30 16 18 N -0.40 -5.70 2.94 -64.49 -0.19 -5.89 16 19 N -0.20 -2.75 11.59 32.94 0.38 -2.37 16 20 C 0.12 1.44 8.67 51.62 0.45 1.89 16 21 Cl 0.08 0.75 29.33 -51.86 -1.52 -0.77 16 22 S -0.01 -0.14 23.22 -107.50 -2.50 -2.64 16 23 C 0.51 7.33 8.62 54.01 0.47 7.80 16 24 O -0.44 -7.13 17.64 5.06 0.09 -7.04 16 25 H 0.11 0.83 7.25 -51.93 -0.38 0.45 16 26 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.08 0.68 6.43 -51.93 -0.33 0.34 16 29 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.13 1.21 6.93 -51.93 -0.36 0.85 16 33 H 0.13 1.26 7.40 -51.93 -0.38 0.88 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -33.91 338.39 -5.29 -39.20 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -2.65 Total: -4.84 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: -0.16 Total: 15.54 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 1.28 Total: -48.59 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.18 Total: -18.85 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.50 Total: -2.64 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -1.52 Total: -0.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.91 -5.29 -39.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191515366.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.602 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds