Wall clock time and date at job start Tue Mar 31 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47010 * 299.99714 * 3 2 1 6 6 H 1.48498 * 109.46935 * 59.99543 * 3 2 1 7 7 C 1.37869 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47436 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47463 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47371 * 180.02562 * 11 10 9 13 13 C 1.35799 * 119.62259 * 90.00180 * 12 11 10 14 14 C 1.35327 * 120.71477 * 180.02562 * 13 12 11 15 15 N 1.48007 * 120.02073 * 179.97438 * 14 13 12 16 16 O 1.21803 * 119.99745 * 359.97438 * 15 14 13 17 17 O 1.21799 * 120.00052 * 179.72443 * 15 14 13 18 18 C 1.40210 * 119.95972 * 0.24498 * 14 13 12 19 19 C 1.36445 * 119.26146 * 359.52086 * 18 14 13 20 20 Br 1.89107 * 120.35256 * 180.20209 * 19 18 14 21 21 C 1.34664 * 119.62419 * 270.02265 * 12 11 10 22 22 O 1.22066 * 119.99118 * 0.02562 * 21 12 11 23 23 H 0.96997 * 119.99831 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46956 * 60.00302 * 9 7 2 25 25 H 1.08999 * 109.47226 * 300.00192 * 9 7 2 26 26 H 1.09000 * 109.46980 * 60.00098 * 10 9 7 27 27 H 1.08999 * 109.46891 * 300.00178 * 10 9 7 28 28 H 1.09000 * 109.47031 * 60.00021 * 11 10 9 29 29 H 1.08999 * 109.47124 * 299.99927 * 11 10 9 30 30 H 1.07993 * 119.64165 * 0.02562 * 13 12 11 31 31 H 1.07997 * 120.36902 * 179.72541 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4805 -4.9870 0.0033 12 7 2.4325 -6.1005 0.0049 13 6 2.8679 -6.6097 1.1861 14 6 3.7475 -7.6378 1.2134 15 7 4.2122 -8.1805 2.5096 16 8 3.8032 -7.7015 3.5521 17 8 5.0001 -9.1091 2.5337 18 6 4.2228 -8.1847 0.0130 19 6 3.7808 -7.6753 -1.1731 20 35 4.3971 -8.3933 -2.8104 21 6 2.8663 -6.6071 -1.1650 22 8 2.4665 -6.1382 -2.2187 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8720 -3.6034 0.8927 27 1 2.8721 -3.6050 -0.8873 28 1 0.8542 -5.0453 -0.8869 29 1 0.8536 -5.0443 0.8931 30 1 2.5082 -6.1898 2.1138 31 1 4.9282 -9.0023 0.0271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195564232.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:55 Heat of formation + Delta-G solvation = -8.496789 kcal Electronic energy + Delta-G solvation = -19595.037136 eV Core-core repulsion = 16119.737097 eV Total energy + Delta-G solvation = -3475.300039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 330.005 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.64516 -41.74149 -37.67040 -36.80075 -36.19535 -33.89675 -32.37929 -31.62484 -29.99956 -27.82190 -26.54711 -24.87591 -23.56507 -22.66104 -20.78683 -19.71453 -19.24224 -17.91950 -17.79678 -17.42063 -16.71597 -16.38498 -15.77143 -14.97864 -14.55963 -14.49704 -14.15869 -13.29819 -13.04602 -12.66615 -12.40575 -11.89271 -11.81279 -11.80118 -11.49532 -11.34421 -11.19111 -11.01500 -10.81658 -10.64993 -10.56614 -10.34358 -10.11512 -9.68589 -9.32223 -8.77985 -8.52184 -6.16888 -4.20559 -0.33816 0.06207 0.71693 1.28180 1.31020 2.09820 2.76317 3.22080 3.30346 3.33869 3.67565 3.83584 3.92725 4.32601 4.47425 4.64567 4.90141 5.06213 5.17507 5.20232 5.40168 5.49878 5.94869 6.07930 6.27607 6.33130 6.65125 7.24793 7.39343 7.41603 7.49039 7.79559 8.19040 8.84956 9.45167 10.94293 Molecular weight = 330.00amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.003549 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.315497 B = 7888.533081 C = 9413.187597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.125 4.125 11 C 0.078 3.922 12 N -0.468 5.468 13 C 0.263 3.737 14 C -0.168 4.168 15 N 0.055 4.945 16 O -0.167 6.167 17 O -0.160 6.160 18 C 0.045 3.955 19 C -0.211 4.211 20 Br 0.015 6.985 21 C 0.527 3.473 22 O -0.478 6.478 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.201 0.799 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.843 -19.661 -0.245 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.163 4.163 11 C -0.040 4.040 12 N -0.173 5.173 13 C 0.122 3.878 14 C -0.260 4.260 15 N 0.572 4.428 16 O -0.379 6.379 17 O -0.374 6.374 18 C 0.021 3.979 19 C -0.295 4.295 20 Br 0.099 6.901 21 C 0.323 3.677 22 O -0.353 6.353 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.217 0.783 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.365 -19.166 -2.274 20.323 hybrid contribution 0.472 0.943 0.792 1.319 sum 6.837 -18.223 -1.482 19.520 Atomic orbital electron populations 1.69952 1.06070 1.26864 1.50257 1.24999 0.94879 0.99399 0.94927 0.86503 0.80089 0.83503 0.77751 1.19711 1.20842 1.20840 1.21149 0.93068 0.90660 1.51479 0.92560 1.19043 0.93599 0.90598 0.97873 1.22118 1.00155 0.92181 1.01872 1.22940 0.90786 0.83988 1.06327 1.46185 1.36726 1.29440 1.04975 1.21991 0.86014 0.86999 0.92752 1.19827 1.13376 1.07680 0.85112 1.42873 0.98876 0.99462 1.01594 1.94581 1.60217 1.62533 1.20586 1.94557 1.29395 1.19662 1.93819 1.20991 0.93274 0.95713 0.87935 1.22554 1.08231 1.04422 0.94317 1.96770 1.86421 1.82248 1.24616 1.16674 0.83098 0.84177 0.83769 1.91102 1.56138 1.59785 1.28297 0.92806 0.95888 0.96031 0.92377 0.91896 0.86836 0.87762 0.78267 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -13.97 9.11 -34.44 -0.31 -14.29 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.13 -2.19 5.48 -26.73 -0.15 -2.33 16 11 C 0.08 1.02 5.33 -4.04 -0.02 1.00 16 12 N -0.47 -5.54 2.59 -119.74 -0.31 -5.85 16 13 C 0.26 2.49 9.81 -16.83 -0.17 2.32 16 14 C -0.17 -1.70 6.82 -80.25 -0.55 -2.25 16 15 N 0.06 0.64 4.45 33.81 0.15 0.79 16 16 O -0.17 -2.02 18.39 -29.46 -0.54 -2.56 16 17 O -0.16 -1.95 18.50 -29.46 -0.54 -2.49 16 18 C 0.04 0.44 9.33 -39.49 -0.37 0.07 16 19 C -0.21 -2.47 6.25 -39.33 -0.25 -2.72 16 20 Br 0.01 0.16 33.23 -68.01 -2.26 -2.10 16 21 C 0.53 7.29 7.41 -15.41 -0.11 7.18 16 22 O -0.48 -8.22 16.02 4.86 0.08 -8.14 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.11 1.62 7.39 -51.93 -0.38 1.23 16 29 H 0.10 1.07 8.01 -51.93 -0.42 0.65 16 30 H 0.20 1.35 7.51 -52.49 -0.39 0.96 16 31 H 0.17 1.33 7.67 -52.49 -0.40 0.93 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -30.59 306.49 -8.08 -38.67 By element: Atomic # 1 Polarization: -2.21 SS G_CDS: -2.83 Total: -5.04 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -2.16 Total: -9.00 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.58 Total: -29.81 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.01 Total: -13.20 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 35 Polarization: 0.16 SS G_CDS: -2.26 Total: -2.10 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.59 -8.08 -38.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195564232.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.174 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds