Wall clock time and date at job start Tue Mar 31 2020 05:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46912 * 83.74759 * 3 2 1 5 5 C 1.53004 * 109.46821 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.77949 * 55.47827 * 5 4 3 7 7 C 1.53231 * 109.62353 * 175.95717 * 5 4 3 8 8 C 1.52965 * 109.40230 * 174.34238 * 7 5 4 9 9 C 1.52960 * 109.81341 * 296.39844 * 8 7 5 10 10 C 1.52800 * 109.48411 * 63.47204 * 9 8 7 11 11 C 1.51267 * 109.62512 * 294.99943 * 5 4 3 12 12 N 1.29338 * 120.85061 * 8.91750 * 11 5 4 13 13 N 1.40101 * 119.99888 * 179.97438 * 12 11 5 14 14 C 1.29338 * 119.99888 * 180.02562 * 13 12 11 15 15 C 1.51264 * 120.84833 * 359.97438 * 14 13 12 16 16 C 1.53230 * 108.53583 * 128.67555 * 15 14 13 17 17 C 1.52955 * 109.40630 * 54.62884 * 16 15 14 18 18 C 1.52959 * 109.81390 * 296.39959 * 17 16 15 19 19 C 1.51267 * 120.85061 * 180.02562 * 14 13 12 20 20 H 1.08996 * 109.78657 * 111.51598 * 19 14 13 21 21 C 1.53002 * 109.62482 * 351.03950 * 19 14 13 22 22 C 1.50703 * 109.47207 * 65.95533 * 21 19 14 23 23 H 1.07994 * 119.99603 * 359.97438 * 22 21 19 24 24 C 1.37875 * 119.99838 * 180.02562 * 22 21 19 25 25 N 1.31513 * 120.00380 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99848 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47261 * 239.99776 * 26 24 22 29 29 H 1.48500 * 109.47454 * 119.99769 * 26 24 22 30 30 H 1.09001 * 109.47047 * 323.74592 * 3 2 1 31 31 H 1.08997 * 109.46766 * 203.74740 * 3 2 1 32 32 H 1.09001 * 109.47401 * 60.00049 * 4 3 2 33 33 H 1.08997 * 109.47389 * 299.99599 * 4 3 2 34 34 H 1.08994 * 109.48424 * 294.32012 * 7 5 4 35 35 H 1.08998 * 109.48328 * 54.36002 * 7 5 4 36 36 H 1.08993 * 109.41157 * 56.50262 * 8 7 5 37 37 H 1.09000 * 109.41003 * 176.29780 * 8 7 5 38 38 H 1.08998 * 109.48157 * 183.57842 * 9 8 7 39 39 H 1.08993 * 109.48547 * 303.60552 * 9 8 7 40 40 H 1.09000 * 109.55769 * 185.79200 * 10 9 8 41 41 H 1.08996 * 109.46604 * 65.36104 * 10 9 8 42 42 H 1.09005 * 109.63114 * 8.95825 * 15 14 13 43 43 H 1.09005 * 109.78483 * 248.48122 * 15 14 13 44 44 H 1.09000 * 109.47845 * 294.64365 * 16 15 14 45 45 H 1.09005 * 109.49090 * 174.61183 * 16 15 14 46 46 H 1.08994 * 109.41473 * 176.29933 * 17 16 15 47 47 H 1.08996 * 109.35926 * 56.46508 * 17 16 15 48 48 H 1.09000 * 109.48377 * 303.62045 * 18 17 16 49 49 H 1.09000 * 109.48551 * 183.57603 * 18 17 16 50 50 H 1.09005 * 109.47493 * 305.95532 * 21 19 14 51 51 H 1.08998 * 109.47006 * 185.95496 * 21 19 14 52 52 H 0.97001 * 119.99667 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.1562 -1.4339 5 6 4.6480 -0.1562 -1.4339 6 1 5.0168 -0.9330 -0.7641 7 6 5.1627 -0.4139 -2.8539 8 6 6.6857 -0.2733 -2.8758 9 6 7.0788 1.1637 -2.5288 10 6 6.6353 1.4829 -1.1018 11 6 5.1560 1.1930 -0.9757 12 7 4.3455 2.0780 -0.4934 13 7 4.8354 3.3218 -0.0739 14 6 4.0249 4.2066 0.4088 15 6 2.5447 3.9192 0.5286 16 6 2.1012 4.2362 1.9606 17 6 2.4944 5.6729 2.3082 18 6 4.0174 5.8131 2.2873 19 6 4.5329 5.5558 0.8669 20 1 4.1671 6.3345 0.1977 21 6 6.0629 5.5557 0.8675 22 6 6.5658 5.4245 -0.5472 23 1 5.8642 5.3484 -1.3646 24 6 7.9214 5.4007 -0.7975 25 7 8.7757 5.4928 0.1981 26 14 8.5446 5.2388 -2.5509 27 1 7.3899 5.1533 -3.4809 28 1 9.3691 4.0096 -2.6718 29 1 9.3704 6.4243 -2.8942 30 1 2.9717 -0.8279 0.6077 31 1 2.9708 0.9415 0.4138 32 1 2.7543 0.6723 -2.0417 33 1 2.7551 -1.0970 -1.8478 34 1 4.8863 -1.4217 -3.1635 35 1 4.7209 0.3107 -3.5379 36 1 7.1229 -0.9547 -2.1461 37 1 7.0582 -0.5207 -3.8698 38 1 8.1603 1.2739 -2.6078 39 1 6.5918 1.8509 -3.2205 40 1 6.8216 2.5355 -0.8887 41 1 7.1914 0.8605 -0.4008 42 1 2.3570 2.8676 0.3115 43 1 1.9899 4.5424 -0.1729 44 1 2.5878 3.5486 2.6524 45 1 1.0196 4.1262 2.0392 46 1 2.1215 5.9203 3.3020 47 1 2.0580 6.3538 1.5774 48 1 4.4586 5.0882 2.9714 49 1 4.2941 6.8209 2.5972 50 1 6.4261 4.7169 1.4613 51 1 6.4262 6.4892 1.2971 52 1 8.4520 5.5772 1.1087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255190568.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:58 Heat of formation + Delta-G solvation = 32.653638 kcal Electronic energy + Delta-G solvation = -29768.854795 eV Core-core repulsion = 26153.250748 eV Total energy + Delta-G solvation = -3615.604047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.20795 -38.35463 -36.72102 -35.02711 -34.03857 -33.65415 -31.94932 -31.22447 -29.99365 -28.28327 -26.83119 -25.62610 -24.00377 -22.86165 -22.38285 -21.31769 -20.61567 -20.50615 -18.91722 -17.57929 -16.95918 -16.53287 -15.93430 -15.68642 -14.74079 -14.40157 -14.33160 -14.15954 -13.78402 -13.68542 -13.64119 -13.49630 -13.40804 -13.02897 -12.90612 -12.77046 -12.51288 -12.35816 -12.17459 -12.05100 -11.86546 -11.55261 -11.40939 -11.20550 -11.10379 -10.98708 -10.87133 -10.76976 -10.67889 -10.61374 -10.43618 -10.29662 -10.19778 -10.09834 -10.02576 -9.89532 -9.45846 -8.49199 -8.25486 -8.16977 -7.71098 -6.18175 -3.80971 1.75209 2.75961 2.81178 3.46587 3.49710 3.55870 3.63365 3.95875 3.99900 4.60597 4.62926 4.76918 4.95865 4.99607 5.02531 5.10328 5.17545 5.19274 5.20331 5.34982 5.37713 5.42637 5.53436 5.56915 5.58366 5.60551 5.71040 5.76327 5.79176 5.85867 5.91961 5.95277 6.00612 6.04186 6.07159 6.14689 6.17050 6.21541 6.23718 6.31465 6.36383 6.37805 6.50808 6.57154 6.69006 6.73820 6.91557 7.12873 7.45108 7.57681 7.63775 7.87576 8.37667 8.64855 8.90484 9.06068 9.84068 11.22531 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.008231 B = 0.006158 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.109843 B = 4546.010538 C = 7519.682979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.215 3.785 3 C -0.044 4.044 4 C -0.096 4.096 5 C -0.039 4.039 6 H 0.098 0.902 7 C -0.109 4.109 8 C -0.121 4.121 9 C -0.114 4.114 10 C -0.132 4.132 11 C 0.191 3.809 12 N -0.401 5.401 13 N -0.324 5.324 14 C 0.195 3.805 15 C -0.128 4.128 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.034 4.034 20 H 0.081 0.919 21 C 0.024 3.976 22 C -0.554 4.554 23 H 0.043 0.957 24 C 0.015 3.985 25 N -0.924 5.924 26 Si 1.058 2.942 27 H -0.292 1.292 28 H -0.287 1.287 29 H -0.291 1.291 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.013 0.987 51 H 0.006 0.994 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 -11.180 -1.120 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.102 4.102 3 C -0.084 4.084 4 C -0.135 4.135 5 C -0.060 4.060 6 H 0.115 0.885 7 C -0.147 4.147 8 C -0.159 4.159 9 C -0.153 4.153 10 C -0.172 4.172 11 C 0.002 3.998 12 N -0.204 5.204 13 N -0.127 5.127 14 C 0.006 3.994 15 C -0.168 4.168 16 C -0.148 4.148 17 C -0.159 4.159 18 C -0.150 4.150 19 C -0.054 4.054 20 H 0.099 0.901 21 C -0.013 4.013 22 C -0.593 4.593 23 H 0.061 0.939 24 C -0.187 4.187 25 N -0.563 5.563 26 Si 0.889 3.111 27 H -0.218 1.218 28 H -0.213 1.213 29 H -0.218 1.218 30 H 0.118 0.882 31 H 0.153 0.847 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.137 0.863 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.031 0.969 51 H 0.024 0.976 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.650 -11.271 -2.056 14.356 hybrid contribution -0.976 0.144 0.840 1.295 sum -9.626 -11.127 -1.216 14.763 Atomic orbital electron populations 1.81181 1.13210 1.09841 1.08954 1.29414 0.95443 0.92489 0.92827 1.19785 0.81134 1.07331 1.00106 1.21383 0.94493 1.02716 0.94951 1.20415 0.94482 0.93183 0.97899 0.88451 1.21601 0.96215 1.01867 0.95013 1.21565 0.95184 0.97571 1.01546 1.21444 1.01360 0.95827 0.96647 1.21448 0.92348 1.06560 0.96840 1.25159 0.93003 0.92616 0.88982 1.72956 1.33329 1.00780 1.13359 1.74513 1.30172 0.96421 1.11610 1.25493 0.90651 0.94572 0.88637 1.21503 0.95075 1.02900 0.97363 1.21481 1.00069 0.97169 0.96060 1.21562 0.96820 0.96512 1.00972 1.21679 0.94321 1.01732 0.97227 1.20456 0.99884 0.90665 0.94402 0.90054 1.19161 0.87890 0.95858 0.98439 1.21803 0.93571 1.52023 0.91913 0.93874 1.25481 0.93462 0.94933 1.04828 1.70706 1.37108 1.48025 1.00431 0.83700 0.75204 0.76868 0.75351 1.21834 1.21341 1.21801 0.88203 0.84677 0.90620 0.91220 0.91118 0.91492 0.91696 0.91896 0.91399 0.92034 0.86301 0.90788 0.89986 0.90852 0.92213 0.92258 0.92337 0.91962 0.92178 0.91514 0.96903 0.97590 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.75 18.54 42.15 0.78 -5.97 16 2 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 3 C -0.04 -0.43 5.44 -29.52 -0.16 -0.59 16 4 C -0.10 -0.91 4.31 -26.73 -0.12 -1.02 16 5 C -0.04 -0.39 2.48 -91.37 -0.23 -0.62 16 6 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 7 C -0.11 -1.00 5.23 -26.63 -0.14 -1.14 16 8 C -0.12 -1.24 5.81 -26.77 -0.16 -1.40 16 9 C -0.11 -1.64 5.92 -26.85 -0.16 -1.79 16 10 C -0.13 -2.19 5.90 -27.71 -0.16 -2.36 16 11 C 0.19 2.79 6.27 -77.81 -0.49 2.30 16 12 N -0.40 -6.69 6.57 36.08 0.24 -6.45 16 13 N -0.32 -6.61 7.52 36.07 0.27 -6.34 16 14 C 0.20 3.68 6.19 -77.81 -0.48 3.19 16 15 C -0.13 -1.96 5.93 -27.49 -0.16 -2.13 16 16 C -0.11 -1.45 5.94 -26.64 -0.16 -1.61 16 17 C -0.12 -1.59 5.81 -26.78 -0.16 -1.74 16 18 C -0.11 -1.76 5.23 -26.61 -0.14 -1.90 16 19 C -0.03 -0.65 2.42 -91.35 -0.22 -0.87 16 20 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 21 C 0.02 0.57 3.43 -27.88 -0.10 0.48 16 22 C -0.55 -14.93 7.54 -34.44 -0.26 -15.19 16 23 H 0.04 1.20 7.53 -52.49 -0.40 0.81 16 24 C 0.02 0.42 5.46 -17.82 -0.10 0.33 16 25 N -0.92 -27.65 13.65 55.43 0.76 -26.89 16 26 Si 1.06 25.40 29.90 -169.99 -5.08 20.32 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.14 1.63 4.25 -51.93 -0.22 1.41 16 32 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.12 2.60 6.87 -51.93 -0.36 2.25 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.25 5.68 -51.93 -0.30 0.96 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.01 0.34 7.92 -51.93 -0.41 -0.08 16 51 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 52 H 0.27 7.99 7.22 -40.82 -0.29 7.70 16 LS Contribution 404.36 15.07 6.09 6.09 Total: -1.00 -31.56 404.36 -9.86 -41.42 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -9.21 Total: 1.56 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -3.70 Total: -23.73 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 2.05 Total: -45.65 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.56 -9.86 -41.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255190568.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.070 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds