Wall clock time and date at job start Tue Mar 31 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52993 * 109.46888 * 149.41368 * 3 2 1 5 5 C 1.53001 * 109.46973 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.77584 * 305.47430 * 5 4 3 7 7 C 1.53236 * 109.62503 * 184.99753 * 5 4 3 8 8 C 1.52955 * 109.40158 * 185.65456 * 7 5 4 9 9 C 1.52965 * 109.81749 * 63.60214 * 8 7 5 10 10 C 1.53232 * 109.40263 * 296.40137 * 9 8 7 11 11 C 1.51263 * 108.53724 * 54.62368 * 10 9 8 12 12 N 1.29337 * 120.85116 * 128.67977 * 11 10 9 13 13 N 1.40107 * 119.99612 * 359.97084 * 12 11 10 14 14 C 1.29330 * 119.99632 * 180.02562 * 13 12 11 15 15 C 1.51267 * 120.85308 * 359.97438 * 14 13 12 16 16 C 1.53233 * 108.53529 * 128.62975 * 15 14 13 17 17 C 1.52962 * 109.40257 * 54.62733 * 16 15 14 18 18 C 1.52955 * 109.81979 * 296.40381 * 17 16 15 19 19 C 1.51269 * 120.84582 * 179.72422 * 14 13 12 20 20 H 1.09002 * 109.62972 * 111.65570 * 19 14 13 21 21 C 1.53007 * 109.62671 * 351.07995 * 19 14 13 22 22 C 1.50699 * 109.46843 * 65.00286 * 21 19 14 23 23 H 1.08007 * 119.99920 * 359.97438 * 22 21 19 24 24 C 1.37875 * 120.00246 * 179.97438 * 22 21 19 25 25 N 1.31516 * 119.99682 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00458 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47013 * 60.00270 * 26 24 22 28 28 H 1.48501 * 109.47360 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47312 * 300.00719 * 26 24 22 30 30 H 1.08993 * 109.47026 * 29.40853 * 3 2 1 31 31 H 1.08999 * 109.46785 * 269.41079 * 3 2 1 32 32 H 1.09006 * 109.47429 * 59.99789 * 4 3 2 33 33 H 1.09003 * 109.47106 * 299.99986 * 4 3 2 34 34 H 1.08988 * 109.48104 * 305.63814 * 7 5 4 35 35 H 1.09004 * 109.47964 * 65.68292 * 7 5 4 36 36 H 1.08999 * 109.41331 * 183.70606 * 8 7 5 37 37 H 1.08999 * 109.41654 * 303.49134 * 8 7 5 38 38 H 1.08995 * 109.48255 * 176.42142 * 9 8 7 39 39 H 1.09001 * 109.48013 * 56.37546 * 9 8 7 40 40 H 1.09005 * 109.62172 * 294.90883 * 10 9 8 41 41 H 1.08994 * 109.62300 * 174.34257 * 10 9 8 42 42 H 1.08998 * 109.62988 * 248.34340 * 15 14 13 43 43 H 1.08996 * 109.62453 * 8.73077 * 15 14 13 44 44 H 1.09001 * 109.48655 * 174.60663 * 16 15 14 45 45 H 1.08998 * 109.48472 * 294.64311 * 16 15 14 46 46 H 1.09003 * 109.40903 * 56.51083 * 17 16 15 47 47 H 1.09000 * 109.41507 * 176.29248 * 17 16 15 48 48 H 1.09000 * 109.48275 * 183.57858 * 18 17 16 49 49 H 1.09001 * 109.48102 * 303.60408 * 18 17 16 50 50 H 1.09004 * 109.46851 * 185.00214 * 21 19 14 51 51 H 1.08999 * 109.47042 * 305.00492 * 21 19 14 52 52 H 0.97000 * 120.00424 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1175 1.2426 -0.7340 5 6 4.6475 1.2437 -0.7334 6 1 5.0160 1.1567 0.2887 7 6 5.1615 2.5457 -1.3568 8 6 6.6845 2.4821 -1.4829 9 6 7.0788 1.3589 -2.4436 10 6 6.6369 0.0123 -1.8612 11 6 5.1567 0.0821 -1.5578 12 7 4.3471 -0.8285 -1.9917 13 7 4.8379 -1.8968 -2.7538 14 6 4.0283 -2.8070 -3.1880 15 6 2.5481 -2.7376 -2.8841 16 6 1.7737 -2.8830 -4.1983 17 6 2.2121 -4.1655 -4.9073 18 6 3.6908 -4.0689 -5.2865 19 6 4.5366 -3.9653 -4.0176 20 1 4.4506 -4.8900 -3.4470 21 6 5.9995 -3.7240 -4.3953 22 6 6.8469 -3.7265 -3.1491 23 1 6.3879 -3.8840 -2.1842 24 6 8.2082 -3.5278 -3.2407 25 7 8.7671 -3.3356 -4.4156 26 14 9.2585 -3.5301 -1.6960 27 1 9.1328 -4.8432 -1.0140 28 1 10.6784 -3.2961 -2.0625 29 1 8.7992 -2.4524 -0.7834 30 1 2.9718 -0.8944 -0.5046 31 1 2.9714 0.0114 1.0276 32 1 2.7537 2.1377 -0.2293 33 1 2.7541 1.2319 -1.7616 34 1 4.7199 2.6747 -2.3449 35 1 4.8842 3.3871 -0.7217 36 1 7.0564 3.4328 -1.8649 37 1 7.1215 2.2907 -0.5029 38 1 8.1604 1.3592 -2.5788 39 1 6.5918 1.5161 -3.4060 40 1 7.1897 -0.1887 -0.9434 41 1 6.8252 -0.7795 -2.5861 42 1 2.2750 -3.5468 -2.2068 43 1 2.3138 -1.7786 -2.4221 44 1 0.7053 -2.9313 -3.9874 45 1 1.9795 -2.0252 -4.8384 46 1 2.0635 -5.0161 -4.2420 47 1 1.6152 -4.3034 -5.8088 48 1 3.9812 -4.9577 -5.8467 49 1 3.8513 -3.1832 -5.9011 50 1 6.3368 -4.5146 -5.0657 51 1 6.0914 -2.7598 -4.8953 52 1 9.7247 -3.1954 -4.4801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255190569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:02 Heat of formation + Delta-G solvation = 36.053166 kcal Electronic energy + Delta-G solvation = -29677.961782 eV Core-core repulsion = 26062.505150 eV Total energy + Delta-G solvation = -3615.456632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.16484 -38.29192 -36.69597 -34.98084 -33.99587 -33.37453 -31.89729 -31.25476 -29.96771 -28.29700 -26.94376 -25.83852 -23.99909 -22.94981 -22.34394 -21.18917 -20.57121 -20.35004 -18.86474 -17.51956 -16.87358 -16.11669 -15.89661 -15.62423 -14.69426 -14.41254 -14.35195 -14.30944 -13.97550 -13.75375 -13.61909 -13.45348 -13.15050 -13.01997 -12.89666 -12.77141 -12.45497 -12.18463 -12.10195 -11.86185 -11.75967 -11.66422 -11.33056 -11.23938 -11.06200 -11.00055 -10.87343 -10.78060 -10.72381 -10.55828 -10.39593 -10.36649 -10.19786 -10.12549 -10.00391 -9.77652 -9.19595 -8.95741 -8.26137 -8.21749 -7.64994 -5.85369 -3.80441 1.80187 2.78013 2.83285 3.36557 3.42169 3.44269 3.61111 3.99042 4.03362 4.55967 4.62751 4.78246 4.97852 5.03262 5.07781 5.14659 5.19337 5.23369 5.26105 5.37805 5.42498 5.45055 5.52627 5.54702 5.59907 5.66115 5.77298 5.79690 5.83011 5.86434 5.98285 6.00497 6.03805 6.05471 6.13291 6.16741 6.21985 6.22434 6.26871 6.39421 6.39690 6.44577 6.53355 6.58598 6.78574 6.84960 7.03573 7.17735 7.59762 7.73181 7.90480 7.92789 8.12100 8.56346 8.95879 9.18930 9.77497 11.26882 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.008031 B = 0.005847 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3485.688475 B = 4787.937289 C = 7233.837172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.216 3.784 3 C -0.042 4.042 4 C -0.096 4.096 5 C -0.040 4.040 6 H 0.097 0.903 7 C -0.107 4.107 8 C -0.122 4.122 9 C -0.111 4.111 10 C -0.131 4.131 11 C 0.189 3.811 12 N -0.400 5.400 13 N -0.325 5.325 14 C 0.196 3.804 15 C -0.129 4.129 16 C -0.108 4.108 17 C -0.122 4.122 18 C -0.110 4.110 19 C -0.041 4.041 20 H 0.080 0.920 21 C 0.037 3.963 22 C -0.473 4.473 23 H 0.048 0.952 24 C 0.057 3.943 25 N -0.902 5.902 26 Si 0.878 3.122 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.135 0.865 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.016 0.984 51 H 0.021 0.979 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.421 9.164 5.239 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.101 4.101 3 C -0.082 4.082 4 C -0.135 4.135 5 C -0.060 4.060 6 H 0.115 0.885 7 C -0.146 4.146 8 C -0.160 4.160 9 C -0.150 4.150 10 C -0.171 4.171 11 C 0.001 3.999 12 N -0.203 5.203 13 N -0.128 5.128 14 C 0.008 3.992 15 C -0.169 4.169 16 C -0.147 4.147 17 C -0.159 4.159 18 C -0.148 4.148 19 C -0.061 4.061 20 H 0.098 0.902 21 C 0.000 4.000 22 C -0.512 4.512 23 H 0.067 0.933 24 C -0.142 4.142 25 N -0.543 5.543 26 Si 0.706 3.294 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.152 0.848 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.034 0.966 51 H 0.040 0.960 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.947 9.193 5.170 14.497 hybrid contribution 1.170 -0.059 0.947 1.506 sum -8.776 9.134 6.117 14.067 Atomic orbital electron populations 1.81185 1.13205 1.09351 1.09500 1.29414 0.95434 0.92667 0.92593 1.19738 0.81122 1.03786 1.03576 1.21377 0.94471 0.95962 1.01662 1.20416 0.94495 0.92270 0.98865 0.88523 1.21588 0.96132 0.95550 1.01318 1.21570 0.95267 0.98859 1.00260 1.21493 1.01116 0.93776 0.98567 1.21520 0.92440 0.99669 1.03443 1.25117 0.92991 0.91305 0.90482 1.72960 1.33472 1.02704 1.11212 1.74540 1.29578 0.99560 1.09091 1.25564 0.90313 0.93008 0.90362 1.21502 0.94341 1.03077 0.97986 1.21462 0.98687 0.98337 0.96208 1.21575 0.96962 0.97569 0.99801 1.21585 0.93410 1.02092 0.97762 1.20530 0.98937 0.93486 0.93198 0.90166 1.19038 0.86803 0.97168 0.97002 1.20917 0.91418 1.46159 0.92704 0.93332 1.24837 0.97913 0.96373 0.95063 1.69938 1.10742 1.50962 1.22641 0.86901 0.79630 0.78350 0.84473 1.20774 1.21654 1.20356 0.84793 0.88192 0.91273 0.90590 0.91508 0.91179 0.91971 0.91768 0.91640 0.92066 0.90849 0.86351 0.90913 0.90003 0.92376 0.92241 0.92012 0.92443 0.91422 0.92150 0.96574 0.96018 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.79 18.54 42.16 0.78 -6.01 16 2 C 0.22 2.66 15.43 -20.76 -0.32 2.34 16 3 C -0.04 -0.42 5.45 -29.52 -0.16 -0.58 16 4 C -0.10 -0.90 4.30 -26.73 -0.11 -1.01 16 5 C -0.04 -0.40 2.47 -91.37 -0.23 -0.63 16 6 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 7 C -0.11 -0.97 5.23 -26.63 -0.14 -1.11 16 8 C -0.12 -1.23 5.81 -26.77 -0.16 -1.39 16 9 C -0.11 -1.52 5.94 -26.63 -0.16 -1.68 16 10 C -0.13 -2.20 5.93 -27.49 -0.16 -2.36 16 11 C 0.19 2.79 6.26 -77.82 -0.49 2.30 16 12 N -0.40 -6.66 6.49 36.07 0.23 -6.43 16 13 N -0.32 -6.57 7.45 36.07 0.27 -6.31 16 14 C 0.20 3.66 6.18 -77.81 -0.48 3.18 16 15 C -0.13 -1.96 5.93 -27.48 -0.16 -2.12 16 16 C -0.11 -1.47 5.94 -26.63 -0.16 -1.63 16 17 C -0.12 -1.60 5.81 -26.77 -0.16 -1.76 16 18 C -0.11 -1.75 5.21 -26.84 -0.14 -1.89 16 19 C -0.04 -0.79 2.41 -91.57 -0.22 -1.01 16 20 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 21 C 0.04 0.90 4.12 -27.88 -0.11 0.79 16 22 C -0.47 -12.56 7.50 -34.44 -0.26 -12.82 16 23 H 0.05 1.30 7.46 -52.48 -0.39 0.91 16 24 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 25 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 26 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 30 H 0.13 1.65 4.92 -51.93 -0.26 1.39 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.07 0.66 8.14 -51.94 -0.42 0.23 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.12 2.59 6.87 -51.93 -0.36 2.23 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.25 6.23 -51.93 -0.32 0.93 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.02 0.58 8.08 -51.93 -0.42 0.16 16 52 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 406.63 15.07 6.13 6.13 Total: -1.00 -30.82 406.63 -9.92 -40.74 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -9.33 Total: 1.03 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -3.71 Total: -19.90 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 2.02 Total: -44.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.82 -9.92 -40.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255190569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.788 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds