Wall clock time and date at job start Tue Mar 31 2020 05:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47285 * 2.34928 * 3 2 1 5 5 C 1.53006 * 109.46918 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.62422 * 55.37329 * 5 4 3 7 7 C 1.53232 * 109.62528 * 175.95368 * 5 4 3 8 8 C 1.52963 * 109.40425 * 174.33780 * 7 5 4 9 9 C 1.52951 * 109.81716 * 296.40345 * 8 7 5 10 10 C 1.53228 * 109.40999 * 63.59625 * 9 8 7 11 11 C 1.51269 * 109.62168 * 294.99494 * 5 4 3 12 12 N 1.29333 * 120.85226 * 8.92044 * 11 5 4 13 13 N 1.40100 * 120.00009 * 180.02562 * 12 11 5 14 14 C 1.29333 * 120.00009 * 179.97438 * 13 12 11 15 15 C 1.51266 * 120.84885 * 359.71846 * 14 13 12 16 16 C 1.52802 * 108.76083 * 231.31086 * 15 14 13 17 17 C 1.52948 * 109.48584 * 305.60525 * 16 15 14 18 18 C 1.52966 * 109.81709 * 63.46880 * 17 16 15 19 19 C 1.51273 * 120.85323 * 179.97438 * 14 13 12 20 20 H 1.08998 * 109.62436 * 248.34730 * 19 14 13 21 21 C 1.53003 * 109.62070 * 8.72194 * 19 14 13 22 22 C 1.50691 * 109.47282 * 294.99899 * 21 19 14 23 23 H 1.08004 * 120.00348 * 0.02562 * 22 21 19 24 24 C 1.37881 * 120.00274 * 180.02562 * 22 21 19 25 25 N 1.31516 * 119.99981 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00332 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46850 * 60.00138 * 26 24 22 28 28 H 1.48500 * 109.47169 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47368 * 300.00043 * 26 24 22 30 30 H 1.09005 * 109.46923 * 242.34214 * 3 2 1 31 31 H 1.09005 * 109.46755 * 122.34771 * 3 2 1 32 32 H 1.08993 * 109.47394 * 59.99858 * 4 3 2 33 33 H 1.09005 * 109.47096 * 299.99634 * 4 3 2 34 34 H 1.08997 * 109.48299 * 294.31710 * 7 5 4 35 35 H 1.08998 * 109.48526 * 54.36032 * 7 5 4 36 36 H 1.09002 * 109.41116 * 56.50627 * 8 7 5 37 37 H 1.08997 * 109.41518 * 176.29150 * 8 7 5 38 38 H 1.08999 * 109.48657 * 303.61639 * 9 8 7 39 39 H 1.09003 * 109.48507 * 183.57661 * 9 8 7 40 40 H 1.08991 * 109.63157 * 185.65714 * 10 9 8 41 41 H 1.09003 * 109.62578 * 65.08228 * 10 9 8 42 42 H 1.08998 * 109.62945 * 351.07982 * 15 14 13 43 43 H 1.08996 * 109.63228 * 111.65897 * 15 14 13 44 44 H 1.09005 * 109.55012 * 185.53267 * 16 15 14 45 45 H 1.08998 * 109.34506 * 65.55356 * 16 15 14 46 46 H 1.09001 * 109.41794 * 303.36610 * 17 16 15 47 47 H 1.09003 * 109.41751 * 183.57183 * 17 16 15 48 48 H 1.08997 * 109.48102 * 176.42415 * 18 17 16 49 49 H 1.09000 * 109.49357 * 56.38557 * 18 17 16 50 50 H 1.09002 * 109.47167 * 54.99935 * 21 19 14 51 51 H 1.09004 * 109.46974 * 174.99877 * 21 19 14 52 52 H 0.96999 * 120.00783 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.4403 -0.0591 5 6 4.6488 -1.4396 -0.0585 6 1 5.0142 -0.8913 0.8097 7 6 5.1641 -2.8820 -0.0157 8 6 6.6872 -2.8819 -0.1575 9 6 7.0806 -2.3238 -1.5261 10 6 6.6373 -0.8604 -1.6258 11 6 5.1570 -0.7846 -1.3238 12 7 4.3466 -0.1758 -2.1271 13 7 4.8365 0.4242 -3.2945 14 6 4.0260 1.0326 -4.0980 15 6 2.5447 1.1025 -3.7994 16 6 1.7724 0.6327 -5.0314 17 6 2.2095 1.4483 -6.2492 18 6 3.6889 1.1913 -6.5416 19 6 4.5342 1.6875 -5.3634 20 1 4.4429 2.7702 -5.2772 21 6 6.0008 1.3112 -5.5833 22 6 6.8396 1.8892 -4.4729 23 1 6.3734 2.4668 -3.6883 24 6 8.2025 1.6807 -4.4583 25 7 8.7705 0.9778 -5.4138 26 14 9.2425 2.3977 -3.0821 27 1 8.7824 1.8537 -1.7792 28 1 10.6659 2.0324 -3.2956 29 1 9.1058 3.8763 -3.0773 30 1 2.9712 0.4779 0.9103 31 1 2.9711 0.5507 -0.8682 32 1 2.7557 -1.9174 -0.9693 33 1 2.7557 -1.9904 0.8091 34 1 4.8875 -3.3388 0.9344 35 1 4.7229 -3.4501 -0.8346 36 1 7.1239 -2.2621 0.6256 37 1 7.0601 -3.9015 -0.0611 38 1 6.5940 -2.9050 -2.3093 39 1 8.1622 -2.3850 -1.6465 40 1 6.8250 -0.4888 -2.6331 41 1 7.1897 -0.2605 -0.9025 42 1 2.3108 0.4559 -2.9537 43 1 2.2662 2.1301 -3.5663 44 1 0.7037 0.7703 -4.8663 45 1 1.9801 -0.4227 -5.2070 46 1 2.0590 2.5089 -6.0481 47 1 1.6134 1.1564 -7.1138 48 1 3.9785 1.7248 -7.4468 49 1 3.8517 0.1227 -6.6815 50 1 6.1008 0.2258 -5.5870 51 1 6.3389 1.7105 -6.5396 52 1 9.7292 0.8307 -5.4034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255190570.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:07 Heat of formation + Delta-G solvation = 36.378493 kcal Electronic energy + Delta-G solvation = -29684.568349 eV Core-core repulsion = 26069.125824 eV Total energy + Delta-G solvation = -3615.442525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.17148 -38.28927 -36.68982 -34.98267 -33.99706 -33.38209 -31.89691 -31.25326 -29.96198 -28.30631 -26.95509 -25.83665 -23.99372 -22.95244 -22.34512 -21.18832 -20.57391 -20.34542 -18.86585 -17.51990 -16.87194 -16.11916 -15.90843 -15.63010 -14.68934 -14.41325 -14.35338 -14.30088 -13.97605 -13.76063 -13.61747 -13.45790 -13.15895 -13.01826 -12.89286 -12.76587 -12.45361 -12.18598 -12.10715 -11.86088 -11.76027 -11.66495 -11.32957 -11.23667 -11.06333 -11.00064 -10.87589 -10.77949 -10.71856 -10.56014 -10.39638 -10.36560 -10.20012 -10.12698 -10.00525 -9.77438 -9.19667 -8.96010 -8.26302 -8.21816 -7.64994 -5.85483 -3.80592 1.79850 2.78491 2.83792 3.36494 3.42104 3.44195 3.60856 3.99347 4.03319 4.55834 4.62614 4.78433 4.97950 5.03084 5.07661 5.14526 5.19384 5.23422 5.26007 5.37909 5.42662 5.45204 5.52538 5.54760 5.60292 5.65818 5.77186 5.79671 5.83174 5.86420 5.98236 6.00244 6.03569 6.05431 6.13666 6.16772 6.21921 6.22325 6.27008 6.39143 6.39711 6.44530 6.53056 6.58375 6.78400 6.84530 7.03528 7.17487 7.60317 7.73134 7.90465 7.92517 8.11989 8.56208 8.95622 9.18808 9.77358 11.26753 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.008021 B = 0.005857 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.867725 B = 4779.803119 C = 7221.244649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.216 3.784 3 C -0.044 4.044 4 C -0.096 4.096 5 C -0.040 4.040 6 H 0.097 0.903 7 C -0.107 4.107 8 C -0.122 4.122 9 C -0.111 4.111 10 C -0.131 4.131 11 C 0.190 3.810 12 N -0.400 5.400 13 N -0.325 5.325 14 C 0.196 3.804 15 C -0.129 4.129 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.110 4.110 19 C -0.041 4.041 20 H 0.081 0.919 21 C 0.037 3.963 22 C -0.473 4.473 23 H 0.048 0.952 24 C 0.057 3.943 25 N -0.902 5.902 26 Si 0.878 3.122 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.021 0.979 51 H 0.016 0.984 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.395 -5.836 8.783 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.101 4.101 3 C -0.084 4.084 4 C -0.135 4.135 5 C -0.061 4.061 6 H 0.115 0.885 7 C -0.146 4.146 8 C -0.160 4.160 9 C -0.150 4.150 10 C -0.171 4.171 11 C 0.001 3.999 12 N -0.204 5.204 13 N -0.128 5.128 14 C 0.008 3.992 15 C -0.169 4.169 16 C -0.147 4.147 17 C -0.159 4.159 18 C -0.148 4.148 19 C -0.061 4.061 20 H 0.099 0.901 21 C 0.000 4.000 22 C -0.512 4.512 23 H 0.067 0.933 24 C -0.142 4.142 25 N -0.543 5.543 26 Si 0.706 3.294 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.118 0.882 31 H 0.154 0.846 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.040 0.960 51 H 0.034 0.966 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.920 -5.891 8.735 14.471 hybrid contribution 1.157 0.486 0.822 1.500 sum -8.763 -5.405 9.557 14.047 Atomic orbital electron populations 1.81186 1.13207 1.09034 1.09861 1.29422 0.95439 0.92778 0.92457 1.19781 0.81107 1.00604 1.06900 1.21376 0.94471 0.94604 1.03017 1.20417 0.94509 0.96484 0.94642 0.88520 1.21585 0.96128 0.94615 1.02244 1.21569 0.95268 1.00967 0.98154 1.21491 1.01120 0.95784 0.96559 1.21519 0.92428 0.96682 1.06431 1.25123 0.92997 0.89408 0.92333 1.72938 1.33442 1.10827 1.03149 1.74539 1.29612 1.09525 0.99099 1.25570 0.90310 0.89796 0.93569 1.21428 0.94348 1.02135 0.98993 1.21389 0.98714 0.99952 0.94660 1.21573 0.96952 1.00095 0.97280 1.21654 0.93403 1.01525 0.98268 1.20615 0.98936 0.98432 0.88162 0.90133 1.19031 0.86746 0.97366 0.96864 1.20914 0.91372 1.30981 1.07951 0.93338 1.24838 0.97892 0.95866 0.95577 1.69936 1.10438 1.40971 1.32926 0.86901 0.79566 0.79489 0.83398 1.20361 1.21651 1.20770 0.88217 0.84599 0.90630 0.91282 0.91176 0.91503 0.91763 0.91967 0.92070 0.91635 0.86362 0.90834 0.90017 0.90912 0.92357 0.92270 0.92005 0.92443 0.91442 0.92135 0.96018 0.96574 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -6.81 18.54 42.16 0.78 -6.03 16 2 C 0.22 2.68 15.43 -20.76 -0.32 2.36 16 3 C -0.04 -0.44 5.44 -29.52 -0.16 -0.60 16 4 C -0.10 -0.90 4.31 -26.73 -0.12 -1.01 16 5 C -0.04 -0.40 2.48 -91.37 -0.23 -0.63 16 6 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 7 C -0.11 -0.97 5.23 -26.63 -0.14 -1.11 16 8 C -0.12 -1.23 5.81 -26.78 -0.16 -1.38 16 9 C -0.11 -1.52 5.94 -26.64 -0.16 -1.68 16 10 C -0.13 -2.19 5.93 -27.48 -0.16 -2.35 16 11 C 0.19 2.79 6.26 -77.81 -0.49 2.30 16 12 N -0.40 -6.66 6.45 36.08 0.23 -6.42 16 13 N -0.33 -6.57 7.45 36.07 0.27 -6.30 16 14 C 0.20 3.65 6.18 -77.81 -0.48 3.17 16 15 C -0.13 -1.96 5.90 -27.71 -0.16 -2.12 16 16 C -0.11 -1.47 5.92 -26.86 -0.16 -1.63 16 17 C -0.12 -1.60 5.81 -26.78 -0.16 -1.75 16 18 C -0.11 -1.75 5.24 -26.61 -0.14 -1.89 16 19 C -0.04 -0.79 2.42 -91.35 -0.22 -1.01 16 20 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 21 C 0.04 0.90 4.14 -27.89 -0.12 0.79 16 22 C -0.47 -12.56 7.50 -34.44 -0.26 -12.82 16 23 H 0.05 1.30 7.46 -52.48 -0.39 0.91 16 24 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 25 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 26 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.14 1.68 4.76 -51.93 -0.25 1.44 16 32 H 0.07 0.82 8.08 -51.93 -0.42 0.41 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.12 2.58 6.86 -51.93 -0.36 2.23 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.25 6.18 -51.93 -0.32 0.93 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.02 0.58 8.08 -51.93 -0.42 0.16 16 51 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 406.44 15.07 6.12 6.12 Total: -1.00 -30.78 406.44 -9.92 -40.70 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -9.32 Total: 1.07 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -3.72 Total: -19.89 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 2.02 Total: -44.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.78 -9.92 -40.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255190570.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.076 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds