Wall clock time and date at job start Tue Mar 31 2020 05:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86805 * 119.99885 * 2 1 4 4 H 1.48497 * 109.47061 * 239.99621 * 3 2 1 5 5 H 1.48502 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46932 * 119.99741 * 3 2 1 7 7 C 1.38949 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00153 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99727 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00211 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99515 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47081 * 180.02562 * 12 10 9 14 14 C 1.46948 * 111.00078 * 169.99861 * 13 12 10 15 15 C 1.53049 * 109.36212 * 183.18555 * 14 13 12 16 16 N 1.46950 * 109.36728 * 301.59977 * 15 14 13 17 17 C 1.46906 * 111.00272 * 183.18927 * 16 15 14 18 18 C 1.50696 * 109.47356 * 170.00139 * 17 16 15 19 19 C 1.32567 * 119.99903 * 127.27501 * 18 17 16 20 20 C 1.47810 * 120.00171 * 8.05871 * 19 18 17 21 21 C 1.39540 * 120.14057 * 217.90251 * 20 19 18 22 22 C 1.37971 * 119.85272 * 179.67769 * 21 20 19 23 23 C 1.38338 * 120.14523 * 0.61410 * 22 21 20 24 24 C 1.38347 * 120.28536 * 359.67916 * 23 22 21 25 25 C 1.37978 * 120.13982 * 0.02562 * 24 23 22 26 26 C 1.46955 * 110.87977 * 59.32412 * 16 15 14 27 27 C 1.46959 * 110.99781 * 293.80321 * 13 12 10 28 28 H 0.97006 * 119.99524 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99849 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47141 * 60.00457 * 12 10 9 31 31 H 1.09001 * 109.47565 * 300.00022 * 12 10 9 32 32 H 1.09005 * 109.48904 * 63.22433 * 14 13 12 33 33 H 1.08992 * 109.49382 * 303.15651 * 14 13 12 34 34 H 1.09005 * 109.48676 * 181.63050 * 15 14 13 35 35 H 1.09002 * 109.48992 * 61.57205 * 15 14 13 36 36 H 1.09004 * 109.47010 * 290.00194 * 17 16 15 37 37 H 1.08999 * 109.47034 * 50.00044 * 17 16 15 38 38 H 1.08007 * 120.00073 * 307.27771 * 18 17 16 39 39 H 1.08009 * 119.99732 * 188.05519 * 19 18 17 40 40 H 1.08000 * 120.07251 * 359.97127 * 21 20 19 41 41 H 1.08004 * 119.92416 * 180.31629 * 22 21 20 42 42 H 1.08000 * 119.85933 * 179.69903 * 23 22 21 43 43 H 1.08002 * 119.92967 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.07206 * 180.02562 * 25 24 23 45 45 H 1.08992 * 109.49404 * 60.64434 * 26 16 15 46 46 H 1.09002 * 109.49049 * 180.71598 * 26 16 15 47 47 H 1.09002 * 109.48783 * 296.77913 * 27 13 12 48 48 H 1.08996 * 109.48974 * 56.81837 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1020 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 1.5137 -7.2576 0.2404 15 6 2.5492 -8.3823 0.3125 16 7 3.3122 -8.4234 -0.9427 17 6 4.2668 -9.5400 -0.9423 18 6 4.8508 -9.7022 -2.3220 19 6 6.1660 -9.7310 -2.4859 20 6 7.0567 -9.7838 -1.3074 21 6 8.2570 -9.0722 -1.3040 22 6 9.0807 -9.1203 -0.1982 23 6 8.7250 -9.8820 0.9005 24 6 7.5392 -10.5947 0.9009 25 6 6.7037 -10.5501 -0.1962 26 6 3.9970 -7.1453 -1.1815 27 6 2.9615 -6.0205 -1.2537 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3907 -0.0002 30 1 0.6169 -4.9208 -0.8886 31 1 0.6174 -4.9205 0.8913 32 1 0.8181 -7.4555 -0.5752 33 1 0.9661 -7.2066 1.1815 34 1 2.0413 -9.3353 0.4607 35 1 3.2283 -8.1986 1.1451 36 1 5.0667 -9.3339 -0.2311 37 1 3.7529 -10.4573 -0.6552 38 1 4.1979 -9.7949 -3.1774 39 1 6.5867 -9.7160 -3.4806 40 1 8.5383 -8.4813 -2.1631 41 1 10.0076 -8.5660 -0.1923 42 1 9.3756 -9.9203 1.7617 43 1 7.2669 -11.1871 1.7619 44 1 5.7781 -11.1066 -0.1945 45 1 4.6925 -6.9474 -0.3660 46 1 4.5445 -7.1963 -2.1226 47 1 2.2823 -6.2043 -2.0862 48 1 3.4690 -5.0674 -1.4020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255848746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:28 Heat of formation + Delta-G solvation = 30.000564 kcal Electronic energy + Delta-G solvation = -27487.821701 eV Core-core repulsion = 23736.269514 eV Total energy + Delta-G solvation = -3751.552187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.83192 -39.13727 -37.88407 -35.90430 -34.10607 -33.61605 -31.27358 -31.19436 -30.70998 -30.06245 -28.58225 -26.22980 -24.56828 -23.42335 -23.22010 -22.68631 -22.09548 -19.63111 -19.33185 -19.14311 -17.82893 -16.86339 -16.20669 -16.01825 -15.66533 -15.29722 -15.09432 -14.84369 -14.66754 -14.44295 -14.33623 -13.95388 -13.70017 -13.64587 -13.54630 -13.24172 -13.05485 -12.77435 -12.37423 -12.11369 -11.96807 -11.70477 -11.48053 -11.33380 -11.22180 -11.05929 -11.02365 -10.99233 -10.62738 -10.54105 -10.41848 -10.18512 -9.94439 -9.43622 -9.14201 -8.54745 -8.41478 -8.15710 -7.94243 -7.77284 -6.38892 -3.79574 0.83198 1.20288 2.15303 3.21828 3.27187 3.31680 3.63405 3.93353 3.97973 4.05899 4.28700 4.54927 4.66191 4.76010 4.84798 4.89758 5.00733 5.06726 5.14952 5.24111 5.27072 5.29628 5.32382 5.37079 5.49523 5.54927 5.65135 5.67953 5.74222 5.76536 5.84649 5.86263 5.96210 5.98528 6.05534 6.13939 6.18193 6.28956 6.31533 6.34294 6.40599 6.48068 6.55240 6.78850 7.03868 7.07924 7.38248 7.48975 7.57709 8.09513 8.65331 9.21077 9.57947 10.10142 10.78883 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.002388 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.407686 B =11721.713090 C =12753.486728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.445 3.555 11 O -0.578 6.578 12 C 0.047 3.953 13 N -0.517 5.517 14 C 0.057 3.943 15 C 0.061 3.939 16 N -0.539 5.539 17 C 0.066 3.934 18 C -0.122 4.122 19 C -0.131 4.131 20 C -0.054 4.054 21 C -0.109 4.109 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.111 4.111 26 C 0.065 3.935 27 C 0.056 3.944 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.030 0.970 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.871 -22.754 -1.821 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.462 6.462 12 C -0.085 4.085 13 N -0.242 5.242 14 C -0.072 4.072 15 C -0.067 4.067 16 N -0.264 5.264 17 C -0.060 4.060 18 C -0.140 4.140 19 C -0.150 4.150 20 C -0.054 4.054 21 C -0.127 4.127 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.129 4.129 26 C -0.062 4.062 27 C -0.072 4.072 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.048 0.952 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.538 -22.574 -1.805 24.573 hybrid contribution -0.316 0.908 -0.013 0.962 sum 9.222 -21.666 -1.818 23.617 Atomic orbital electron populations 1.69611 1.05919 1.28195 1.50704 1.25253 0.95625 0.99674 0.97405 0.85928 0.78760 0.80533 0.79053 1.19940 1.21003 1.19910 1.19644 0.93311 0.82246 1.47580 0.88007 1.41866 1.09180 1.04579 1.64554 1.19756 0.88401 0.84557 0.84263 1.90477 1.13737 1.86905 1.55077 1.21834 0.93946 0.91209 1.01481 1.61747 1.25294 1.01475 1.35691 1.22158 0.95174 0.89037 1.00824 1.22105 0.95963 0.98154 0.90494 1.62153 1.26150 1.03527 1.34550 1.21614 0.94869 0.94610 0.94929 1.23237 0.94952 0.97289 0.98519 1.21680 0.93299 1.03242 0.96791 1.19092 0.94685 0.97377 0.94273 1.21292 0.93889 0.98837 0.98684 1.21109 0.99820 0.99174 0.93701 1.21205 0.97031 0.97353 0.98375 1.21090 0.94742 0.99910 0.98377 1.21396 0.99282 0.99071 0.93113 1.22111 0.95664 0.87638 1.00833 1.22326 0.95695 1.00005 0.89173 0.91864 0.77499 0.93454 0.89422 0.94370 0.90475 0.90692 0.93975 0.92498 0.90310 0.86044 0.85997 0.85891 0.86011 0.86196 0.86065 0.85772 0.93937 0.90714 0.95225 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 10 C 0.44 10.67 7.48 -10.99 -0.08 10.58 16 11 O -0.58 -15.73 13.92 5.55 0.08 -15.65 16 12 C 0.05 0.86 5.45 -4.97 -0.03 0.84 16 13 N -0.52 -9.08 4.44 -235.91 -1.05 -10.12 16 14 C 0.06 0.78 5.61 -3.77 -0.02 0.76 16 15 C 0.06 0.75 5.61 -3.77 -0.02 0.73 16 16 N -0.54 -6.87 4.70 -235.91 -1.11 -7.98 16 17 C 0.07 0.70 3.72 -4.97 -0.02 0.68 16 18 C -0.12 -1.18 8.52 -36.22 -0.31 -1.48 16 19 C -0.13 -1.23 9.79 -37.58 -0.37 -1.60 16 20 C -0.05 -0.55 5.15 -105.02 -0.54 -1.09 16 21 C -0.11 -1.09 9.79 -39.19 -0.38 -1.47 16 22 C -0.12 -1.13 10.03 -39.64 -0.40 -1.52 16 23 C -0.12 -1.10 10.04 -39.50 -0.40 -1.50 16 24 C -0.12 -1.12 10.03 -39.64 -0.40 -1.52 16 25 C -0.11 -1.06 7.32 -39.20 -0.29 -1.35 16 26 C 0.07 0.98 5.44 -3.77 -0.02 0.96 16 27 C 0.06 0.97 5.26 -3.77 -0.02 0.95 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 30 H 0.05 0.82 8.12 -51.93 -0.42 0.39 16 31 H 0.09 1.46 8.03 -51.93 -0.42 1.05 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.65 4.81 -51.93 -0.25 0.40 16 37 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 38 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.12 1.04 6.35 -52.49 -0.33 0.70 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.06 7.20 -51.93 -0.37 0.68 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.11 2.20 5.85 -51.93 -0.30 1.89 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -31.64 385.32 -11.57 -43.21 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -7.41 Total: 11.20 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.53 Total: -4.07 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -1.49 Total: -56.72 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.08 Total: -15.65 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.64 -11.57 -43.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255848746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.207 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds