Wall clock time and date at job start Tue Mar 31 2020 06:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47242 * 2 1 4 4 S 1.65599 * 119.99995 * 165.00290 * 3 2 1 5 5 O 1.42108 * 106.40061 * 311.45906 * 4 3 2 6 6 O 1.42093 * 106.40000 * 178.53975 * 4 3 2 7 7 C 1.76200 * 107.21903 * 64.99705 * 4 3 2 8 8 C 1.38477 * 119.88641 * 90.00073 * 7 4 3 9 9 C 1.38225 * 120.34969 * 179.97438 * 8 7 4 10 10 C 1.38294 * 120.12541 * 359.97438 * 9 8 7 11 11 F 1.35097 * 120.11237 * 179.97438 * 10 9 8 12 12 C 1.39892 * 119.76992 * 0.02562 * 10 9 8 13 13 C 1.47587 * 120.16782 * 180.02562 * 12 10 9 14 14 O 1.21604 * 119.99689 * 303.91903 * 13 12 10 15 15 N 1.34777 * 120.00186 * 124.19577 * 13 12 10 16 16 C 1.46506 * 119.99633 * 3.68595 * 15 13 12 17 17 C 1.36885 * 120.00061 * 183.67924 * 15 13 12 18 18 H 1.07994 * 120.00077 * 351.59373 * 17 15 13 19 19 C 1.39040 * 119.99636 * 171.59682 * 17 15 13 20 20 N 1.31368 * 120.00396 * 7.71281 * 19 17 15 21 21 Si 1.86797 * 119.99439 * 187.71353 * 19 17 15 22 22 H 1.48505 * 109.47288 * 90.00053 * 21 19 17 23 23 H 1.48498 * 109.47285 * 209.99766 * 21 19 17 24 24 H 1.48498 * 109.47633 * 329.99650 * 21 19 17 25 25 C 1.37843 * 119.89115 * 270.25868 * 7 4 3 26 26 H 1.08998 * 109.47454 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47053 * 299.99976 * 1 2 3 28 28 H 1.09001 * 109.47611 * 59.99905 * 1 2 3 29 29 H 1.08999 * 109.46988 * 239.99752 * 2 1 3 30 30 H 1.08996 * 109.47213 * 120.00267 * 2 1 3 31 31 H 0.97002 * 119.99604 * 344.99567 * 3 2 1 32 32 H 1.08001 * 119.82513 * 359.95493 * 8 7 4 33 33 H 1.07994 * 119.93520 * 179.97438 * 9 8 7 34 34 H 1.08993 * 109.47191 * 356.47539 * 16 15 13 35 35 H 1.08998 * 109.47177 * 116.48230 * 16 15 13 36 36 H 1.09002 * 109.46321 * 236.48459 * 16 15 13 37 37 H 0.96994 * 120.00229 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.06044 * 0.04296 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6004 1.7001 0.3711 5 8 3.8849 0.9832 1.5647 6 8 3.7651 3.1063 0.2512 7 6 4.5894 0.9736 -0.8933 8 6 4.9192 1.7089 -2.0194 9 6 5.6949 1.1487 -3.0169 10 6 6.1478 -0.1523 -2.8958 11 9 6.9055 -0.6998 -3.8711 12 6 5.8177 -0.8999 -1.7604 13 6 6.2968 -2.2889 -1.6218 14 8 6.0440 -3.1081 -2.4842 15 7 7.0098 -2.6508 -0.5368 16 6 7.2403 -1.6876 0.5428 17 6 7.5183 -3.9183 -0.4435 18 1 7.2374 -4.6675 -1.1687 19 6 8.3964 -4.2410 0.5851 20 7 8.6207 -3.3801 1.5517 21 14 9.2571 -5.8988 0.5925 22 1 10.5452 -5.7911 -0.1388 23 1 9.5170 -6.3154 1.9939 24 1 8.3937 -6.9079 -0.0718 25 6 5.0278 -0.3265 -0.7607 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.4149 2.1090 -0.2175 32 1 4.5681 2.7255 -2.1190 33 1 5.9477 1.7281 -3.8925 34 1 6.8172 -0.7223 0.2650 35 1 6.7635 -2.0442 1.4558 36 1 8.3119 -1.5798 0.7107 37 1 9.2336 -3.6051 2.2690 38 1 4.7649 -0.8992 0.1164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263837142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:43 Heat of formation + Delta-G solvation = -106.280299 kcal Electronic energy + Delta-G solvation = -26690.010247 eV Core-core repulsion = 22575.147273 eV Total energy + Delta-G solvation = -4114.862974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.75987 -39.51951 -37.73247 -37.30763 -36.06194 -35.87995 -34.85513 -32.10288 -30.96858 -30.75489 -29.94419 -26.51144 -25.05079 -23.34010 -23.11682 -23.02302 -20.40719 -19.34460 -17.78294 -17.62431 -17.18577 -16.98295 -16.69280 -16.15137 -16.00233 -15.39564 -14.97999 -14.77520 -14.71150 -14.20593 -13.99132 -13.88206 -13.46492 -13.26833 -13.19200 -12.74769 -12.56415 -12.18951 -12.16885 -12.07724 -11.94440 -11.87196 -11.65157 -11.63828 -11.30427 -11.09799 -10.97274 -10.89138 -10.44206 -10.34948 -9.73622 -9.15978 -9.12010 -8.97099 -8.54305 -8.04033 -6.40686 -3.94107 0.28958 0.70110 1.06968 2.82242 3.07137 3.17901 3.22813 3.26105 3.64806 3.79280 3.99589 4.18707 4.29054 4.60235 4.67579 4.71450 4.89424 4.93118 5.03511 5.06412 5.25466 5.33797 5.39701 5.65045 5.67300 5.74173 5.76682 5.88663 5.93583 6.01506 6.15114 6.27867 6.74042 6.74816 6.97703 7.30561 7.43934 7.88888 8.31522 9.00656 9.23447 9.78238 10.51183 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.004174 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.321466 B = 6706.754739 C = 7425.893780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.106 3.894 3 N -1.118 6.118 4 S 2.700 3.300 5 O -0.949 6.949 6 O -0.961 6.961 7 C -0.699 4.699 8 C 0.004 3.996 9 C -0.179 4.179 10 C 0.185 3.815 11 F -0.117 7.117 12 C -0.136 4.136 13 C 0.457 3.543 14 O -0.585 6.585 15 N -0.422 5.422 16 C 0.096 3.904 17 C -0.299 4.299 18 H 0.110 0.890 19 C 0.030 3.970 20 N -0.873 5.873 21 Si 0.937 3.063 22 H -0.275 1.275 23 H -0.281 1.281 24 H -0.267 1.267 25 C 0.029 3.971 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.417 0.583 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.271 0.729 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.198 11.480 -2.172 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.020 4.020 3 N -0.879 5.879 4 S 2.789 3.211 5 O -0.939 6.939 6 O -0.951 6.951 7 C -0.786 4.786 8 C -0.016 4.016 9 C -0.199 4.199 10 C 0.164 3.836 11 F -0.095 7.095 12 C -0.141 4.141 13 C 0.245 3.755 14 O -0.472 6.472 15 N -0.137 5.137 16 C -0.047 4.047 17 C -0.427 4.427 18 H 0.127 0.873 19 C -0.174 4.174 20 N -0.513 5.513 21 Si 0.763 3.237 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.192 1.192 25 C 0.009 3.991 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.251 0.749 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.711 11.304 -1.621 16.357 hybrid contribution 0.611 -0.831 -0.809 1.311 sum -11.100 10.473 -2.430 15.453 Atomic orbital electron populations 1.21943 0.93991 1.03155 1.02559 1.21355 0.96533 0.81221 1.02887 1.55578 1.28664 1.14903 1.88716 1.01728 0.72304 0.73181 0.73871 1.93624 1.83614 1.74306 1.42337 1.93578 1.85337 1.29176 1.87040 1.30771 1.22699 1.06338 1.18765 1.20674 0.92394 0.98643 0.89840 1.21124 1.02787 0.94020 1.01972 1.17979 0.89366 0.91052 0.85196 1.91570 1.72240 1.85801 1.59900 1.20489 1.01690 0.97365 0.94556 1.17367 0.86995 0.86139 0.84967 1.90646 1.62399 1.51383 1.42768 1.43700 1.43233 1.11943 1.14853 1.22209 1.04203 0.88511 0.89794 1.19898 1.23076 0.87315 1.12419 0.87266 1.25462 0.96849 1.00184 0.94904 1.70138 1.35162 1.35150 1.10807 0.85750 0.79616 0.80788 0.77557 1.20087 1.20661 1.19161 1.21017 0.89959 0.91869 0.96294 0.90821 0.91818 0.91991 0.91307 0.89791 0.74887 0.83484 0.83681 0.95383 0.91441 0.89156 0.91838 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 10.05 37.16 0.37 -0.65 16 2 C 0.11 0.93 6.94 -4.04 -0.03 0.90 16 3 N -1.12 -9.93 6.00 -10.61 -0.06 -10.00 16 4 S 2.70 33.67 5.73 -107.50 -0.62 33.05 16 5 O -0.95 -14.95 16.75 -57.17 -0.96 -15.90 16 6 O -0.96 -13.35 17.27 -57.17 -0.99 -14.34 16 7 C -0.70 -9.72 5.94 -39.64 -0.24 -9.95 16 8 C 0.00 0.05 9.51 -39.50 -0.38 -0.32 16 9 C -0.18 -2.44 10.01 -39.57 -0.40 -2.84 16 10 C 0.19 3.36 7.28 -38.94 -0.28 3.07 16 11 F -0.12 -2.33 16.71 2.25 0.04 -2.29 16 12 C -0.14 -2.73 4.81 -104.91 -0.50 -3.24 16 13 C 0.46 11.52 6.81 -12.45 -0.08 11.44 16 14 O -0.59 -16.65 16.53 5.27 0.09 -16.56 16 15 N -0.42 -10.97 3.02 -123.37 -0.37 -11.34 16 16 C 0.10 2.23 8.15 59.85 0.49 2.72 16 17 C -0.30 -8.25 9.54 -15.00 -0.14 -8.40 16 18 H 0.11 3.14 7.19 -52.49 -0.38 2.76 16 19 C 0.03 0.77 5.45 -17.45 -0.10 0.67 16 20 N -0.87 -22.44 9.49 55.50 0.53 -21.91 16 21 Si 0.94 20.31 29.56 -169.99 -5.02 15.29 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 25 C 0.03 0.49 6.89 -39.17 -0.27 0.22 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.80 7.75 -51.93 -0.40 0.39 16 31 H 0.42 2.64 8.65 -34.47 -0.30 2.34 16 32 H 0.15 1.37 7.60 -52.49 -0.40 0.97 16 33 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.03 0.57 4.60 -51.93 -0.24 0.33 16 35 H 0.07 1.61 7.56 -51.93 -0.39 1.22 16 36 H 0.09 2.23 6.48 -51.93 -0.34 1.89 16 37 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 38 H 0.15 2.54 7.07 -52.49 -0.37 2.17 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -34.41 339.61 -7.87 -42.28 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.06 Total: 2.98 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.56 Total: -6.37 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.09 Total: -43.25 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -1.86 Total: -46.81 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 33.67 SS G_CDS: -0.62 Total: 33.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.41 -7.87 -42.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263837142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.000 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds