Wall clock time and date at job start Tue Mar 31 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34896 * 117.00447 * 2 1 4 4 O 1.21633 * 119.99409 * 0.02562 * 3 2 1 5 5 C 1.46392 * 120.00332 * 179.97438 * 3 2 1 6 6 C 1.36746 * 125.46406 * 180.02562 * 5 3 2 7 7 C 1.37409 * 113.29382 * 179.97438 * 6 5 3 8 8 C 1.33862 * 115.10368 * 359.97438 * 7 6 5 9 9 S 1.76205 * 124.51730 * 179.97438 * 8 7 6 10 10 O 1.42101 * 106.40337 * 336.46410 * 9 8 7 11 11 O 1.42098 * 106.40471 * 203.53698 * 9 8 7 12 12 N 1.65607 * 107.21397 * 90.00193 * 9 8 7 13 13 C 1.36932 * 119.99998 * 90.00107 * 12 9 8 14 14 H 1.08003 * 119.99974 * 353.25753 * 13 12 9 15 15 C 1.38815 * 119.99980 * 173.52473 * 13 12 9 16 16 N 1.31616 * 120.00012 * 333.27699 * 15 13 12 17 17 Si 1.86799 * 119.99892 * 153.27512 * 15 13 12 18 18 H 1.48504 * 109.47071 * 90.00220 * 17 15 13 19 19 H 1.48498 * 109.47131 * 210.00098 * 17 15 13 20 20 H 1.48496 * 109.47410 * 330.00352 * 17 15 13 21 21 C 1.46500 * 119.99828 * 269.99599 * 12 9 8 22 22 C 1.47191 * 109.47541 * 267.96565 * 21 12 9 23 23 N 9.48147 * 147.65352 * 336.27623 * 3 1 2 24 24 S 1.70616 * 110.96437 * 0.23257 * 8 7 6 25 25 H 1.09005 * 109.47225 * 299.99861 * 1 2 3 26 26 H 1.09003 * 109.47130 * 60.00192 * 1 2 3 27 27 H 1.08999 * 109.47570 * 179.97438 * 1 2 3 28 28 H 1.08008 * 123.35451 * 359.97438 * 6 5 3 29 29 H 1.07991 * 122.45254 * 180.02562 * 7 6 5 30 30 H 0.97008 * 120.00121 * 180.02562 * 16 15 13 31 31 H 1.09006 * 109.47428 * 27.96865 * 21 12 9 32 32 H 1.09000 * 109.47021 * 147.96056 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4020 2.2220 0.0005 5 6 3.5264 1.2785 0.0006 6 6 4.2604 2.4322 0.0011 7 6 5.6169 2.2132 0.0021 8 6 5.9844 0.9260 0.0030 9 16 7.6546 0.3644 0.0037 10 8 8.4334 1.4208 -0.5411 11 8 7.6368 -0.9483 -0.5399 12 7 8.1187 0.2091 1.5858 13 6 7.9326 -0.9792 2.2404 14 1 7.3864 -1.7791 1.7626 15 6 8.4414 -1.1537 3.5201 16 7 9.4956 -0.4680 3.9084 17 14 7.6297 -2.3617 4.6911 18 1 8.2510 -3.7009 4.5300 19 1 7.8136 -1.8957 6.0890 20 1 6.1792 -2.4491 4.3852 21 6 8.7284 1.3429 2.2850 22 6 10.1924 1.2729 2.1501 23 7 11.3236 1.2184 2.0410 24 16 4.6200 -0.0983 -0.0040 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.8180 3.4175 0.0008 29 1 6.3343 3.0205 0.0031 30 1 9.8513 -0.5903 4.8025 31 1 8.3676 2.2749 1.8497 32 1 8.4586 1.3066 3.3404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264083734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:22 Heat of formation + Delta-G solvation = -71.623136 kcal Electronic energy + Delta-G solvation = -23365.212132 eV Core-core repulsion = 19546.398992 eV Total energy + Delta-G solvation = -3818.813140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.022 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.47443 -37.78893 -36.79671 -36.48872 -36.30899 -35.02628 -34.47055 -31.78978 -30.50308 -27.92944 -27.61286 -25.20883 -24.22856 -22.13229 -20.01629 -19.21184 -18.66219 -18.11119 -17.46443 -16.88703 -16.56363 -16.28632 -16.02655 -15.50357 -14.84696 -14.59089 -14.13948 -13.83445 -13.78043 -13.27654 -13.16087 -12.80605 -12.56924 -12.42002 -12.27546 -11.86573 -11.62645 -11.45996 -11.32798 -11.21825 -11.16601 -11.06178 -11.04690 -10.74135 -10.70004 -10.65244 -10.43703 -10.21302 -9.83348 -9.19941 -8.55065 -8.51835 -6.74814 -4.12818 0.08869 1.00308 1.52600 1.92771 2.04672 2.45106 2.82019 3.04908 3.13683 3.16840 3.56184 3.96583 4.12941 4.27515 4.44655 4.66478 4.72287 4.86783 4.94633 5.11724 5.20806 5.27213 5.29464 5.44986 5.77412 5.85434 5.90161 6.10767 6.29263 6.35940 6.73531 7.19302 7.47268 7.96997 8.46649 8.85700 8.86918 10.27902 Molecular weight = 330.02amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.004685 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.943594 B = 5974.786819 C = 7058.016377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.543 3.457 4 O -0.500 6.500 5 C -0.265 4.265 6 C -0.062 4.062 7 C -0.050 4.050 8 C -0.783 4.783 9 S 2.626 3.374 10 O -0.965 6.965 11 O -0.955 6.955 12 N -0.818 5.818 13 C -0.306 4.306 14 H 0.122 0.878 15 C 0.051 3.949 16 N -0.838 5.838 17 Si 0.908 3.092 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.233 3.767 22 C 0.258 3.742 23 N -0.473 5.473 24 S 0.368 5.632 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.280 0.720 31 H 0.087 0.913 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 2.366 -2.348 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.272 6.272 3 C 0.387 3.613 4 O -0.390 6.390 5 C -0.385 4.385 6 C -0.098 4.098 7 C -0.084 4.084 8 C -0.979 4.979 9 S 2.714 3.286 10 O -0.954 6.954 11 O -0.944 6.944 12 N -0.648 5.648 13 C -0.444 4.444 14 H 0.140 0.860 15 C -0.159 4.159 16 N -0.477 5.477 17 Si 0.733 3.267 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.188 1.188 21 C 0.103 3.897 22 C -0.061 4.061 23 N -0.153 5.153 24 S 0.640 5.360 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.174 0.826 29 H 0.175 0.825 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.227 0.889 -3.257 13.651 hybrid contribution -1.434 1.303 1.188 2.273 sum -14.661 2.192 -2.068 14.968 Atomic orbital electron populations 1.23311 0.75492 1.03999 1.02717 1.86606 1.23960 1.32111 1.84513 1.19694 0.87156 0.81738 0.72745 1.90876 1.66083 1.35855 1.46182 1.24071 0.94288 1.00988 1.19193 1.20890 0.92779 0.98342 0.97779 1.19638 0.95598 0.95223 0.97966 1.36999 1.34040 1.07566 1.19274 1.06300 0.74294 0.73446 0.74589 1.93495 1.67244 1.57311 1.77360 1.93484 1.86573 1.36977 1.77364 1.53794 1.61857 1.15807 1.33324 1.19540 1.36224 0.88891 0.99704 0.86032 1.25169 0.94624 0.98692 0.97430 1.69963 1.16265 1.41356 1.20109 0.86229 0.80555 0.80444 0.79459 1.19941 1.20416 1.18779 1.18302 0.81330 0.87962 1.02099 1.28953 0.94958 0.91262 0.90921 1.80942 1.13481 1.09871 1.10993 1.83058 0.89189 1.03366 1.60338 0.91644 0.91717 0.87712 0.82637 0.82480 0.90899 0.89555 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 78. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.38 16 2 O -0.36 -4.33 10.42 -41.03 -0.43 -4.76 16 3 C 0.54 7.62 7.92 34.01 0.27 7.89 16 4 O -0.50 -7.73 16.64 -19.37 -0.32 -8.05 16 5 C -0.26 -3.80 6.45 -36.84 -0.24 -4.04 16 6 C -0.06 -0.84 10.01 -40.42 -0.40 -1.24 16 7 C -0.05 -0.72 9.77 -41.42 -0.40 -1.13 16 8 C -0.78 -13.07 6.35 29.20 0.19 -12.88 16 9 S 2.63 53.14 5.73 -107.50 -0.62 52.52 16 10 O -0.96 -20.68 16.78 -57.17 -0.96 -21.64 16 11 O -0.95 -21.58 16.69 -57.17 -0.95 -22.54 16 12 N -0.82 -17.15 2.88 -62.78 -0.18 -17.33 16 13 C -0.31 -6.81 9.38 -15.06 -0.14 -6.95 16 14 H 0.12 2.65 7.41 -52.48 -0.39 2.26 16 15 C 0.05 1.13 4.88 -17.43 -0.09 1.04 16 16 N -0.84 -19.29 9.12 55.49 0.51 -18.79 16 17 Si 0.91 17.27 29.63 -169.99 -5.04 12.24 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 C 0.23 4.49 5.07 -6.83 -0.03 4.46 16 22 C 0.26 5.85 13.48 -20.71 -0.28 5.58 16 23 N -0.47 -11.59 18.55 42.22 0.78 -10.81 16 24 S 0.37 5.60 22.68 -107.50 -2.44 3.16 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.16 1.94 8.02 -52.49 -0.42 1.51 16 30 H 0.28 6.17 8.31 -40.82 -0.34 5.83 16 31 H 0.09 1.32 7.72 -51.93 -0.40 0.92 16 32 H 0.13 2.35 6.36 -51.93 -0.33 2.02 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -29.95 324.61 -7.18 -37.13 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -2.37 Total: -0.14 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.06 Total: -5.89 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 1.11 Total: -46.93 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -2.66 Total: -56.99 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.04 Total: 12.24 kcal Atomic # 16 Polarization: 58.74 SS G_CDS: -3.05 Total: 55.69 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.95 -7.18 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264083734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.491 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds