Wall clock time and date at job start Tue Mar 31 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65598 * 120.00359 * 2 1 4 4 O 1.42090 * 106.40167 * 311.46416 * 3 2 1 5 5 O 1.42102 * 106.40300 * 178.54022 * 3 2 1 6 6 C 1.76201 * 107.21557 * 65.00298 * 3 2 1 7 7 C 1.33843 * 122.44927 * 90.02448 * 6 3 2 8 8 S 1.70618 * 110.97358 * 179.97438 * 7 6 3 9 9 C 1.75835 * 91.56578 * 0.02562 * 8 7 6 10 10 C 1.46460 * 125.46166 * 180.02562 * 9 8 7 11 11 O 1.21738 * 119.99699 * 171.73760 * 10 9 8 12 12 N 1.34774 * 119.99612 * 351.74513 * 10 9 8 13 13 C 1.36889 * 119.99704 * 181.06296 * 12 10 9 14 14 H 1.08003 * 120.00037 * 224.77638 * 13 12 10 15 15 C 1.39006 * 119.99922 * 44.77165 * 13 12 10 16 16 N 1.31395 * 119.99955 * 7.18993 * 15 13 12 17 17 Si 1.86803 * 120.00087 * 187.19001 * 15 13 12 18 18 H 1.48497 * 109.46934 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47043 * 120.00114 * 17 15 13 20 20 H 1.48500 * 109.46961 * 240.00322 * 17 15 13 21 21 C 1.46496 * 120.00563 * 1.06352 * 12 10 9 22 22 C 1.53002 * 117.50073 * 180.47303 * 21 12 10 23 23 C 1.52998 * 117.50081 * 111.80911 * 21 12 10 24 24 C 1.36765 * 109.07349 * 0.02562 * 9 8 7 25 25 H 1.08999 * 109.47388 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47152 * 299.99944 * 1 2 3 27 27 H 1.08999 * 109.46990 * 59.99658 * 1 2 3 28 28 H 0.97003 * 120.00126 * 180.02562 * 2 1 3 29 29 H 1.08004 * 124.51507 * 0.24415 * 7 6 3 30 30 H 0.97004 * 119.99940 * 184.99027 * 16 15 13 31 31 H 1.08996 * 115.54719 * 326.14061 * 21 12 10 32 32 H 1.09001 * 117.49600 * 359.97438 * 22 21 12 33 33 H 1.08997 * 117.50184 * 145.01873 * 22 21 12 34 34 H 1.09002 * 117.50307 * 214.97520 * 23 21 12 35 35 H 1.09004 * 117.49917 * 0.02562 * 23 21 12 36 36 H 1.08002 * 123.35885 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2329 -1.0215 5 8 3.6738 1.1001 0.0347 6 6 1.9379 2.2413 1.5254 7 6 2.6799 2.0588 2.6243 8 16 2.0768 2.9792 3.9282 9 6 0.7776 3.6246 2.9346 10 6 -0.2476 4.5687 3.3848 11 8 -1.0112 5.0680 2.5788 12 7 -0.3455 4.8846 4.6913 13 6 -1.3177 5.7502 5.1151 14 1 -1.0736 6.5356 5.8152 15 6 -2.6190 5.6183 4.6445 16 7 -2.9487 4.5827 3.9061 17 14 -3.8989 6.9135 5.0616 18 1 -3.2782 7.9708 5.8995 19 1 -4.4188 7.5172 3.8084 20 1 -5.0168 6.2823 5.8079 21 6 0.5883 4.3018 5.6580 22 6 0.4183 4.6913 7.1278 23 6 1.5970 5.2420 6.3210 24 6 0.8780 3.1037 1.6741 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.9500 -0.8401 -0.0004 29 1 3.5477 1.4180 2.6773 30 1 -3.8358 4.5268 3.5176 31 1 0.9152 3.2848 5.4414 32 1 -0.3882 5.3815 7.3754 33 1 0.6337 3.9307 7.8782 34 1 2.5873 4.8434 6.5412 35 1 1.5654 6.2942 6.0384 36 1 0.1937 3.3470 0.8747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267112351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:10 Heat of formation + Delta-G solvation = -20.325690 kcal Electronic energy + Delta-G solvation = -24196.192080 eV Core-core repulsion = 20515.436459 eV Total energy + Delta-G solvation = -3680.755621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -38.87898 -37.50511 -37.11456 -35.96776 -35.74096 -34.99645 -33.01008 -31.22272 -29.42902 -26.06177 -25.75817 -24.50754 -22.12187 -21.72556 -21.32013 -19.35392 -18.56706 -18.31997 -17.52862 -16.65126 -16.44197 -16.04778 -15.65120 -14.99512 -14.74394 -14.39523 -13.99567 -13.83594 -13.57659 -13.21568 -13.15469 -12.86952 -12.66107 -12.53999 -12.02162 -11.91387 -11.81248 -11.62470 -11.30945 -11.23913 -11.13146 -11.09745 -10.83267 -10.59005 -10.29548 -10.22847 -9.80039 -9.60013 -8.97469 -8.62834 -8.40712 -8.27419 -7.25778 -6.21295 -4.08988 0.46823 0.84031 1.86250 2.21022 2.29056 3.21039 3.23315 3.27718 3.31003 3.83263 4.07369 4.18703 4.48314 4.65056 4.70669 5.00683 5.04945 5.13960 5.28223 5.40645 5.46665 5.50581 5.60797 5.70640 5.77361 5.79480 6.03557 6.07456 6.17159 6.36404 6.50366 6.63440 6.69630 6.85123 7.42859 8.06719 8.82521 8.94114 9.39764 10.06618 10.80416 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.004374 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.855247 B = 6400.198536 C = 7509.074981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.121 6.121 3 S 2.713 3.287 4 O -0.955 6.955 5 O -0.968 6.968 6 C -0.682 4.682 7 C -0.188 4.188 8 S 0.254 5.746 9 C -0.208 4.208 10 C 0.534 3.466 11 O -0.503 6.503 12 N -0.416 5.416 13 C -0.330 4.330 14 H 0.086 0.914 15 C 0.058 3.942 16 N -0.817 5.817 17 Si 0.918 3.082 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.283 1.283 21 C 0.049 3.951 22 C -0.159 4.159 23 C -0.199 4.199 24 C -0.040 4.040 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.415 0.585 29 H 0.171 0.829 30 H 0.268 0.732 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.808 -9.684 0.817 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.801 3.199 4 O -0.945 6.945 5 O -0.958 6.958 6 C -0.784 4.784 7 C -0.328 4.328 8 S 0.522 5.478 9 C -0.330 4.330 10 C 0.321 3.679 11 O -0.380 6.380 12 N -0.136 5.136 13 C -0.458 4.458 14 H 0.103 0.897 15 C -0.154 4.154 16 N -0.450 5.450 17 Si 0.744 3.256 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.209 1.209 21 C -0.059 4.059 22 C -0.197 4.197 23 C -0.238 4.238 24 C -0.070 4.070 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.249 0.751 29 H 0.188 0.812 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.057 -8.881 1.125 12.734 hybrid contribution -1.109 -0.225 -0.589 1.275 sum 7.948 -9.106 0.536 12.099 Atomic orbital electron populations 1.21523 0.78122 1.03977 1.02782 1.55311 1.16373 1.24185 1.92195 1.01321 0.72508 0.72444 0.73656 1.93582 1.78560 1.68219 1.54121 1.93555 1.31115 1.83662 1.87490 1.29430 1.08489 1.18786 1.21713 1.25751 1.02676 1.05124 0.99259 1.83597 1.19255 1.35362 1.09593 1.25628 1.02657 1.06703 0.98017 1.16523 0.84122 0.84301 0.82963 1.90696 1.41480 1.53737 1.52129 1.42644 1.27746 1.40769 1.02480 1.19060 0.86824 1.09478 1.30428 0.89671 1.25391 0.97654 0.96136 0.96215 1.69884 1.20585 1.26708 1.27850 0.86037 0.80528 0.80650 0.78345 1.19396 1.20505 1.20865 1.22002 0.97074 0.94932 0.91911 1.23107 1.00606 1.03586 0.92391 1.23427 0.94150 1.00662 1.05575 1.20122 0.95817 0.93929 0.97090 0.90127 0.91541 0.91210 0.75136 0.81156 0.92210 0.87724 0.86979 0.89158 0.89033 0.88460 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 11.14 59.84 0.67 1.50 16 2 N -1.12 -11.78 6.19 -16.64 -0.10 -11.88 16 3 S 2.71 38.88 5.79 -107.50 -0.62 38.26 16 4 O -0.95 -16.81 17.36 -57.17 -0.99 -17.81 16 5 O -0.97 -15.16 17.62 -57.17 -1.01 -16.17 16 6 C -0.68 -10.94 5.84 -41.41 -0.24 -11.18 16 7 C -0.19 -2.71 10.40 29.19 0.30 -2.41 16 8 S 0.25 3.93 17.95 -107.50 -1.93 2.00 16 9 C -0.21 -4.36 6.29 -36.81 -0.23 -4.59 16 10 C 0.53 13.68 6.85 -12.95 -0.09 13.60 16 11 O -0.50 -14.90 14.27 5.15 0.07 -14.83 16 12 N -0.42 -10.10 2.85 -109.28 -0.31 -10.41 16 13 C -0.33 -8.56 8.04 -15.01 -0.12 -8.68 16 14 H 0.09 2.09 7.10 -52.48 -0.37 1.72 16 15 C 0.06 1.54 4.73 -17.45 -0.08 1.46 16 16 N -0.82 -23.32 11.00 55.50 0.61 -22.71 16 17 Si 0.92 20.70 29.56 -169.99 -5.03 15.68 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.05 0.93 4.61 -67.93 -0.31 0.62 16 22 C -0.16 -2.57 9.80 -26.69 -0.26 -2.83 16 23 C -0.20 -3.09 10.29 -26.69 -0.27 -3.36 16 24 C -0.04 -0.78 9.54 -40.40 -0.39 -1.17 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.42 3.19 8.96 -34.47 -0.31 2.88 16 29 H 0.17 1.95 7.97 -52.48 -0.42 1.53 16 30 H 0.27 7.30 8.32 -40.82 -0.34 6.96 16 31 H 0.11 1.82 4.50 -21.99 -0.10 1.72 16 32 H 0.11 1.98 6.66 -51.93 -0.35 1.64 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.16 3.19 7.98 -52.49 -0.42 2.77 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -35.61 331.75 -8.97 -44.58 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.63 Total: 5.35 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.03 Total: -17.06 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.20 Total: -45.00 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.93 Total: -48.81 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.68 kcal Atomic # 16 Polarization: 42.81 SS G_CDS: -2.55 Total: 40.26 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.61 -8.97 -44.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267112351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.258 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds