Wall clock time and date at job start Tue Mar 31 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00165 * 2 1 4 4 H 1.48501 * 109.47326 * 240.00242 * 3 2 1 5 5 H 1.48500 * 109.46787 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47231 * 119.99547 * 3 2 1 7 7 C 1.38815 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00414 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99589 * 0.02562 * 7 2 1 10 10 S 1.65602 * 120.00044 * 185.01701 * 9 7 2 11 11 O 1.42107 * 106.40111 * 311.12547 * 10 9 7 12 12 O 1.42098 * 106.40481 * 178.20315 * 10 9 7 13 13 C 1.76199 * 107.21409 * 64.66471 * 10 9 7 14 14 C 1.38241 * 119.94231 * 242.24977 * 13 10 9 15 15 C 1.38667 * 120.06480 * 179.97438 * 14 13 10 16 16 C 1.39013 * 119.82084 * 359.94122 * 15 14 13 17 17 C 1.38659 * 119.82172 * 359.97438 * 16 15 14 18 18 C 1.38203 * 119.94424 * 62.28101 * 13 10 9 19 19 N 1.48004 * 119.94485 * 0.04722 * 18 13 10 20 20 O 1.21794 * 120.00446 * 173.43177 * 19 18 13 21 21 O 1.21805 * 119.99680 * 353.43140 * 19 18 13 22 22 O 1.36107 * 120.77693 * 180.26168 * 16 15 14 23 23 C 1.43175 * 116.71164 * 342.84027 * 22 16 15 24 24 C 1.53467 * 108.24822 * 46.17022 * 23 22 16 25 25 O 1.36105 * 119.39456 * 179.88959 * 15 14 13 26 26 H 0.97005 * 120.00321 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00474 * 5.02034 * 9 7 2 28 28 H 1.07999 * 119.97303 * 359.97438 * 14 13 10 29 29 H 1.07994 * 119.97349 * 179.89257 * 17 16 15 30 30 H 1.09003 * 109.70841 * 286.47583 * 23 22 16 31 31 H 1.08998 * 109.70222 * 165.86106 * 23 22 16 32 32 H 1.09004 * 109.70985 * 180.54887 * 24 23 22 33 33 H 1.08999 * 109.71214 * 59.91659 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 16 2.1487 -3.8194 0.1266 11 8 3.2013 -3.7622 -0.8264 12 8 1.1673 -4.8469 0.1398 13 6 2.9147 -3.8425 1.7132 14 6 4.2925 -3.8939 1.8136 15 6 4.8979 -3.9117 3.0610 16 6 4.1157 -3.8763 4.2097 17 6 2.7344 -3.8230 4.1019 18 6 2.1370 -3.8098 2.8552 19 7 0.6621 -3.7565 2.7434 20 8 -0.0282 -3.8483 3.7426 21 8 0.1387 -3.6209 1.6520 22 8 4.6897 -3.8876 5.4437 23 6 6.0552 -4.3121 5.5146 24 6 6.8375 -3.6026 4.4010 25 8 6.2554 -3.9647 3.1440 26 1 -0.4851 0.8401 -0.0004 27 1 0.3584 -2.3897 -0.0733 28 1 4.8980 -3.9203 0.9197 29 1 2.1243 -3.7973 4.9926 30 1 6.1124 -5.3915 5.3737 31 1 6.4733 -4.0450 6.4851 32 1 7.8809 -3.9169 4.4271 33 1 6.7745 -2.5231 4.5380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268695319.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:39 Heat of formation + Delta-G solvation = -96.181080 kcal Electronic energy + Delta-G solvation = -27282.052991 eV Core-core repulsion = 23019.422068 eV Total energy + Delta-G solvation = -4262.630923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.049 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.84124 -41.33567 -37.83776 -37.64170 -36.29609 -35.63173 -34.81957 -34.51604 -31.83210 -31.25164 -31.13903 -29.24282 -26.26381 -24.82361 -24.57918 -23.10656 -21.41459 -19.67458 -18.72728 -18.45517 -18.29898 -18.08531 -17.45414 -17.03401 -16.90145 -16.37060 -15.86784 -15.34179 -14.86956 -14.77160 -14.71482 -14.58853 -14.15216 -14.12766 -13.50186 -13.12932 -12.84110 -12.16961 -11.74156 -11.50232 -11.46772 -11.26087 -11.08890 -10.99188 -10.85178 -10.83297 -10.72805 -10.65722 -10.49116 -10.15410 -10.11107 -10.02395 -9.09154 -8.60725 -8.48141 -6.82947 -4.05176 0.06106 0.79661 1.49238 1.69903 1.80252 2.60127 2.90900 3.04177 3.06836 3.09357 3.23874 3.78391 3.84781 4.21590 4.35638 4.42631 4.50591 4.61521 4.71780 4.89181 4.96069 5.04025 5.07603 5.19803 5.53896 5.60739 5.73633 5.95608 6.14076 6.44229 6.78884 6.89754 7.01470 7.20876 8.18352 8.43521 8.50685 9.04375 10.27882 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.005746 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.682336 B = 4872.128970 C = 5490.502108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.928 3.072 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.233 4.233 8 H 0.112 0.888 9 N -0.900 5.900 10 S 2.536 3.464 11 O -0.977 6.977 12 O -0.980 6.980 13 C -0.592 4.592 14 C -0.028 4.028 15 C 0.074 3.926 16 C 0.072 3.928 17 C -0.070 4.070 18 C 0.043 3.957 19 N 0.027 4.973 20 O -0.187 6.187 21 O -0.115 6.115 22 O -0.299 6.299 23 C 0.019 3.981 24 C 0.016 3.984 25 O -0.297 6.297 26 H 0.285 0.715 27 H 0.421 0.579 28 H 0.168 0.832 29 H 0.162 0.838 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.849 -2.752 10.013 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.185 4.185 3 Si 0.753 3.247 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.383 4.383 8 H 0.129 0.871 9 N -0.650 5.650 10 S 2.625 3.375 11 O -0.966 6.966 12 O -0.968 6.968 13 C -0.666 4.666 14 C -0.048 4.048 15 C 0.027 3.973 16 C 0.025 3.975 17 C -0.090 4.090 18 C -0.042 4.042 19 N 0.540 4.460 20 O -0.391 6.391 21 O -0.334 6.334 22 O -0.214 6.214 23 C -0.056 4.056 24 C -0.059 4.059 25 O -0.210 6.210 26 H 0.096 0.904 27 H 0.259 0.741 28 H 0.186 0.814 29 H 0.179 0.821 30 H 0.100 0.900 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.738 -3.673 9.720 16.439 hybrid contribution 0.041 1.090 1.157 1.590 sum 12.779 -2.583 10.877 16.979 Atomic orbital electron populations 1.69729 1.06324 1.29750 1.40729 1.25623 0.95835 1.00438 0.96634 0.85946 0.79301 0.79824 0.79672 1.18816 1.20102 1.19448 1.19828 0.93002 0.83468 1.42028 0.87082 1.52747 1.19419 1.20397 1.72441 1.11530 0.73002 0.76222 0.76737 1.93412 1.57267 1.87529 1.58396 1.93438 1.57988 1.58476 1.86898 1.32455 1.02381 1.05087 1.26667 1.20206 0.91882 0.96472 0.96214 1.19274 0.83029 1.01133 0.93848 1.18395 0.91592 1.03443 0.84022 1.19986 0.91925 0.99677 0.97422 1.19946 0.80112 1.09731 0.94419 1.43399 1.02677 0.99172 1.00716 1.94448 1.61490 1.55216 1.27995 1.94528 1.74926 1.50138 1.13834 1.86333 1.27299 1.82966 1.24754 1.23741 0.80228 1.00090 1.01579 1.23758 0.98867 1.00946 0.82332 1.86379 1.16170 1.83646 1.34851 0.90425 0.74058 0.81425 0.82054 0.90020 0.85468 0.85444 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.48 13.06 55.49 0.72 -19.76 16 2 C 0.03 0.68 5.50 -17.43 -0.10 0.59 16 3 Si 0.93 18.10 29.55 -169.99 -5.02 13.08 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 7 C -0.23 -5.63 9.64 -15.06 -0.15 -5.77 16 8 H 0.11 2.50 7.80 -52.49 -0.41 2.09 16 9 N -0.90 -21.90 4.47 31.50 0.14 -21.76 16 10 S 2.54 59.35 4.87 -107.50 -0.52 58.82 16 11 O -0.98 -23.77 16.66 -57.17 -0.95 -24.73 16 12 O -0.98 -24.91 15.35 -67.25 -1.03 -25.95 16 13 C -0.59 -12.30 5.81 -39.59 -0.23 -12.53 16 14 C -0.03 -0.50 9.46 -39.42 -0.37 -0.87 16 15 C 0.07 1.17 6.49 -39.14 -0.25 0.91 16 16 C 0.07 1.11 6.49 -39.14 -0.25 0.86 16 17 C -0.07 -1.21 9.47 -39.42 -0.37 -1.58 16 18 C 0.04 0.87 6.80 -79.96 -0.54 0.33 16 19 N 0.03 0.62 4.45 33.96 0.15 0.77 16 20 O -0.19 -4.04 18.46 -29.46 -0.54 -4.59 16 21 O -0.11 -2.80 11.63 -37.30 -0.43 -3.24 16 22 O -0.30 -3.77 10.42 -32.85 -0.34 -4.11 16 23 C 0.02 0.15 7.26 37.40 0.27 0.42 16 24 C 0.02 0.13 7.26 37.40 0.27 0.41 16 25 O -0.30 -3.86 10.42 -32.84 -0.34 -4.20 16 26 H 0.29 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.42 10.54 6.70 -34.47 -0.23 10.31 16 28 H 0.17 2.84 7.34 -52.49 -0.39 2.45 16 29 H 0.16 2.47 7.62 -52.49 -0.40 2.07 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -31.24 305.18 -7.56 -38.79 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -2.25 Total: 9.51 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -1.73 Total: -17.24 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 1.02 Total: -40.75 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -3.65 Total: -66.81 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.08 kcal Atomic # 16 Polarization: 59.35 SS G_CDS: -0.52 Total: 58.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.24 -7.56 -38.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268695319.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.388 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds