Wall clock time and date at job start Tue Mar 31 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21566 * 119.99859 * 359.97438 * 14 13 3 16 16 C 1.47689 * 120.00194 * 179.97438 * 14 13 3 17 17 C 1.39666 * 120.16669 * 359.72080 * 16 14 13 18 18 C 1.37861 * 119.87592 * 179.74630 * 17 16 14 19 19 S 1.76202 * 119.88850 * 180.23031 * 18 17 16 20 20 N 1.65599 * 107.21842 * 270.29795 * 19 18 17 21 21 O 1.42095 * 106.40058 * 23.83760 * 19 18 17 22 22 O 1.42098 * 106.40050 * 156.75620 * 19 18 17 23 23 C 1.38451 * 120.21940 * 0.52976 * 18 17 16 24 24 C 1.38212 * 120.34027 * 359.71968 * 23 18 17 25 25 C 1.38319 * 120.11785 * 0.02562 * 24 23 18 26 26 F 1.35091 * 120.11537 * 179.97438 * 25 24 23 27 27 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 28 28 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 30 30 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 31 31 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 34 34 H 1.08000 * 120.05707 * 359.97438 * 17 16 14 35 35 H 0.96998 * 119.99766 * 0.02562 * 20 19 18 36 36 H 0.96999 * 120.00222 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.83530 * 179.70098 * 23 18 17 38 38 H 1.08002 * 119.94098 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6325 0.4321 16 6 0.0443 3.3241 2.6292 17 6 0.9313 3.3577 3.7076 18 6 0.5622 3.9797 4.8812 19 16 1.6832 4.0275 6.2398 20 7 1.4080 2.6720 7.1503 21 8 2.9858 3.8842 5.6904 22 8 1.2953 5.1349 7.0413 23 6 -0.6886 4.5617 4.9979 24 6 -1.5754 4.5293 3.9383 25 6 -1.2177 3.9134 2.7525 26 9 -2.0846 3.8814 1.7170 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8295 -0.0694 -2.9455 33 1 2.2720 2.1230 1.9978 34 1 1.9058 2.9003 3.6209 35 1 0.7248 2.0379 6.8818 36 1 1.9299 2.5121 7.9522 37 1 -0.9731 5.0432 5.9219 38 1 -2.5496 4.9849 4.0366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281149341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:46 Heat of formation + Delta-G solvation = -130.687931 kcal Electronic energy + Delta-G solvation = -26327.423997 eV Core-core repulsion = 22211.502629 eV Total energy + Delta-G solvation = -4115.921368 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.09789 -39.94847 -38.35990 -37.39725 -36.07998 -35.16822 -33.50162 -32.79050 -31.80891 -31.22711 -30.54347 -27.07948 -24.47316 -23.57073 -22.93866 -21.06941 -19.75201 -19.50667 -18.85546 -17.84704 -17.67582 -17.12601 -16.99436 -16.15411 -15.90469 -15.61236 -15.53138 -15.23468 -14.75583 -14.52567 -14.27339 -13.70340 -13.51182 -13.16311 -12.96506 -12.72832 -12.42622 -12.34488 -12.24675 -12.09657 -11.86922 -11.58347 -11.31883 -11.28580 -11.02338 -10.84852 -10.80955 -10.37493 -10.24503 -9.71305 -9.59145 -9.39703 -9.28732 -9.11079 -8.53903 -7.96180 -6.15472 -4.25369 0.01555 0.27446 0.56432 2.52107 2.88589 3.25841 3.30879 3.32474 3.35656 3.64581 3.74472 3.85546 4.08118 4.33357 4.37773 4.47488 4.90344 5.05467 5.14451 5.16634 5.31844 5.48181 5.61305 5.66394 5.72254 6.29393 6.33113 6.38961 6.59029 6.68377 6.96775 7.12033 7.25123 7.32664 7.54556 7.65795 7.83058 8.11650 8.49338 8.69235 8.93756 9.41699 10.89777 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.004066 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.560482 B = 6884.604334 C = 8540.249873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.697 5.697 14 C 0.539 3.461 15 O -0.528 6.528 16 C -0.179 4.179 17 C 0.040 3.960 18 C -0.701 4.701 19 S 2.707 3.293 20 N -1.250 6.250 21 O -0.955 6.955 22 O -0.963 6.963 23 C 0.024 3.976 24 C -0.186 4.186 25 C 0.214 3.786 26 F -0.101 7.101 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.036 0.964 30 H 0.102 0.898 31 H 0.032 0.968 32 H 0.266 0.734 33 H 0.388 0.612 34 H 0.157 0.843 35 H 0.418 0.582 36 H 0.421 0.579 37 H 0.155 0.845 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 4.431 18.807 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.345 5.345 14 C 0.323 3.677 15 O -0.406 6.406 16 C -0.184 4.184 17 C 0.020 3.980 18 C -0.788 4.788 19 S 2.794 3.206 20 N -0.925 5.925 21 O -0.944 6.944 22 O -0.952 6.952 23 C 0.004 3.996 24 C -0.206 4.206 25 C 0.193 3.807 26 F -0.079 7.079 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.222 0.778 34 H 0.175 0.825 35 H 0.245 0.755 36 H 0.251 0.749 37 H 0.173 0.827 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.803 5.111 17.902 20.186 hybrid contribution 0.442 -0.654 -0.186 0.811 sum -7.361 4.457 17.716 19.695 Atomic orbital electron populations 1.21848 0.98351 0.98160 1.01182 1.21953 0.92573 0.99613 1.02543 1.18888 0.94511 0.89242 0.80453 0.92965 1.21186 0.90445 1.39269 1.06687 0.91913 1.24872 0.98728 0.94643 0.95277 1.69881 1.35307 1.37314 1.09401 0.86492 0.84657 0.78418 0.77464 1.20064 1.21135 1.20109 1.46505 1.13877 1.55154 1.18964 1.17781 0.83708 0.80030 0.86141 1.90829 1.51197 1.59433 1.39173 1.20684 0.94712 1.05282 0.97701 1.21124 0.98156 0.89414 0.89336 1.30549 1.13904 1.16700 1.17661 1.01483 0.73312 0.72772 0.72992 1.53043 1.53250 1.43608 1.42618 1.93649 1.36428 1.85576 1.78723 1.93602 1.83264 1.50517 1.67857 1.20910 0.89725 0.90316 0.98623 1.21273 1.02611 1.04337 0.92338 1.18052 0.86296 0.92055 0.84320 1.91652 1.67221 1.92948 1.56060 0.93028 0.95700 0.94521 0.88004 0.94879 0.92441 0.77785 0.82537 0.75510 0.74877 0.82719 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.66 2.24 -69.09 -0.16 6.50 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.30 11.28 55.43 0.63 -23.68 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 13 N -0.70 -14.15 4.97 -55.93 -0.28 -14.43 16 14 C 0.54 10.63 6.34 -12.40 -0.08 10.55 16 15 O -0.53 -12.18 12.48 5.31 0.07 -12.11 16 16 C -0.18 -2.71 5.88 -104.91 -0.62 -3.33 16 17 C 0.04 0.49 9.01 -39.19 -0.35 0.13 16 18 C -0.70 -6.85 5.94 -39.64 -0.24 -7.09 16 19 S 2.71 24.35 6.28 -107.50 -0.67 23.67 16 20 N -1.25 -6.28 9.55 60.35 0.58 -5.70 16 21 O -0.95 -12.27 17.28 -57.17 -0.99 -13.25 16 22 O -0.96 -10.88 17.27 -57.17 -0.99 -11.87 16 23 C 0.02 0.20 9.51 -39.51 -0.38 -0.17 16 24 C -0.19 -1.80 10.01 -39.56 -0.40 -2.20 16 25 C 0.21 2.95 7.29 -38.96 -0.28 2.67 16 26 F -0.10 -1.63 15.55 2.25 0.04 -1.59 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16 30 H 0.10 2.67 5.94 -51.93 -0.31 2.36 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.39 6.80 6.57 -40.82 -0.27 6.53 16 34 H 0.16 1.79 5.96 -52.49 -0.31 1.47 16 35 H 0.42 1.23 8.92 -34.47 -0.31 0.92 16 36 H 0.42 1.45 8.96 -34.47 -0.31 1.14 16 37 H 0.16 0.90 7.60 -52.49 -0.40 0.50 16 38 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 335.11 15.07 5.05 5.05 Total: -1.00 -35.25 335.11 -8.12 -43.38 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -3.81 Total: 6.44 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.72 Total: -11.36 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.92 Total: -43.81 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -1.91 Total: -37.23 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 24.35 SS G_CDS: -0.67 Total: 23.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.25 -8.12 -43.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281149341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.311 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds