Wall clock time and date at job start Tue Mar 31 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21566 * 119.99859 * 359.97438 * 14 13 3 16 16 C 1.47689 * 120.00194 * 179.97438 * 14 13 3 17 17 C 1.39666 * 120.16669 * 359.72080 * 16 14 13 18 18 C 1.37861 * 119.87592 * 179.74630 * 17 16 14 19 19 S 1.76202 * 119.88850 * 180.23031 * 18 17 16 20 20 N 1.65599 * 107.21842 * 270.29795 * 19 18 17 21 21 O 1.42095 * 106.40058 * 23.83760 * 19 18 17 22 22 O 1.42098 * 106.40050 * 156.75620 * 19 18 17 23 23 C 1.38451 * 120.21940 * 0.52976 * 18 17 16 24 24 C 1.38212 * 120.34027 * 359.71968 * 23 18 17 25 25 C 1.38319 * 120.11785 * 0.02562 * 24 23 18 26 26 F 1.35091 * 120.11537 * 179.97438 * 25 24 23 27 27 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 28 28 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 30 30 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 31 31 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 34 34 H 1.08000 * 120.05707 * 359.97438 * 17 16 14 35 35 H 0.96998 * 119.99766 * 0.02562 * 20 19 18 36 36 H 0.96999 * 120.00222 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.83530 * 179.70098 * 23 18 17 38 38 H 1.08002 * 119.94098 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6325 0.4321 16 6 0.0443 3.3241 2.6292 17 6 0.9313 3.3577 3.7076 18 6 0.5622 3.9797 4.8812 19 16 1.6832 4.0275 6.2398 20 7 1.4080 2.6720 7.1503 21 8 2.9858 3.8842 5.6904 22 8 1.2953 5.1349 7.0413 23 6 -0.6886 4.5617 4.9979 24 6 -1.5754 4.5293 3.9383 25 6 -1.2177 3.9134 2.7525 26 9 -2.0846 3.8814 1.7170 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8295 -0.0694 -2.9455 33 1 2.2720 2.1230 1.9978 34 1 1.9058 2.9003 3.6209 35 1 0.7248 2.0379 6.8818 36 1 1.9299 2.5121 7.9522 37 1 -0.9731 5.0432 5.9219 38 1 -2.5496 4.9849 4.0366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281149341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:45 Heat of formation + Delta-G solvation = -159.600540 kcal Electronic energy + Delta-G solvation = -26328.677742 eV Core-core repulsion = 22211.502629 eV Total energy + Delta-G solvation = -4117.175113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.20694 -41.25862 -39.61527 -38.24368 -37.00971 -36.92504 -34.50201 -34.00470 -33.38547 -32.15613 -32.01958 -28.98286 -25.76727 -24.86299 -24.32721 -22.50577 -21.32296 -20.60542 -19.94223 -18.75851 -18.55574 -18.30454 -18.12037 -17.38863 -17.14822 -16.98579 -16.63787 -16.39802 -16.19309 -16.04993 -15.63460 -14.79595 -14.63416 -14.50392 -14.44649 -14.11152 -13.68388 -13.47551 -13.23258 -13.19609 -13.17743 -13.12583 -12.94247 -12.81903 -12.66624 -12.21013 -12.18543 -12.09685 -11.62318 -11.30194 -11.10394 -10.90658 -10.54586 -10.48029 -10.45115 -9.74092 -8.17740 -6.35351 -0.81228 -0.59045 -0.36762 1.45193 1.46764 1.52430 1.54705 2.14476 2.22874 2.35438 2.46936 2.70404 2.85276 3.11861 3.20794 3.47507 3.59654 3.95340 4.01806 4.26085 4.44479 4.47789 4.53370 4.60047 4.70343 4.75443 4.78736 5.02437 5.22022 5.33645 5.39391 5.40978 5.47415 5.56687 5.74669 5.85852 6.13112 6.39450 6.70137 6.80294 7.26300 7.41743 8.87388 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.004066 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.560482 B = 6884.604334 C = 8540.249873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.552 4.552 6 H 0.071 0.929 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.696 5.696 14 C 0.537 3.463 15 O -0.571 6.571 16 C -0.204 4.204 17 C 0.040 3.960 18 C -0.691 4.691 19 S 2.736 3.264 20 N -1.233 6.233 21 O -0.994 6.994 22 O -0.980 6.980 23 C 0.043 3.957 24 C -0.168 4.168 25 C 0.191 3.809 26 F -0.123 7.123 27 H 0.025 0.975 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.266 0.734 33 H 0.402 0.598 34 H 0.160 0.840 35 H 0.430 0.570 36 H 0.431 0.569 37 H 0.196 0.804 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 4.972 22.272 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.590 4.590 6 H 0.089 0.911 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.345 5.345 14 C 0.324 3.676 15 O -0.452 6.452 16 C -0.209 4.209 17 C 0.020 3.980 18 C -0.778 4.778 19 S 2.822 3.178 20 N -0.914 5.914 21 O -0.983 6.983 22 O -0.970 6.970 23 C 0.024 3.976 24 C -0.187 4.187 25 C 0.170 3.830 26 F -0.101 7.101 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.239 0.761 34 H 0.177 0.823 35 H 0.261 0.739 36 H 0.265 0.735 37 H 0.213 0.787 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.767 5.652 21.413 23.469 hybrid contribution 0.369 -0.768 -1.143 1.426 sum -7.398 4.884 20.270 22.124 Atomic orbital electron populations 1.21681 0.97042 0.99282 1.00112 1.21791 0.93649 0.98814 1.01696 1.18466 0.93884 0.89385 0.80790 0.98109 1.21526 0.91201 1.39209 1.07095 0.91068 1.25724 1.03249 0.94219 0.94901 1.70033 1.37127 1.38026 1.09884 0.85448 0.79134 0.78403 0.77667 1.18789 1.21040 1.19902 1.46235 1.14835 1.55424 1.18051 1.18415 0.82674 0.79142 0.87405 1.90797 1.52228 1.60936 1.41258 1.20277 0.96549 1.07697 0.96391 1.21119 0.97774 0.89745 0.89364 1.30688 1.14596 1.15696 1.16789 1.00498 0.72080 0.72906 0.72283 1.52634 1.53717 1.42668 1.42378 1.93612 1.38822 1.86324 1.79530 1.93586 1.83296 1.52101 1.67973 1.21462 0.88426 0.88205 0.99508 1.21644 1.04171 1.02470 0.90375 1.18454 0.85730 0.93451 0.85340 1.91596 1.67753 1.93351 1.57414 0.95604 0.93281 0.94074 0.90639 0.93660 0.92500 0.76148 0.82289 0.73929 0.73514 0.78724 0.79450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.51 71.98 0.61 -4.97 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.74 16 3 C 0.28 14.31 2.24 44.25 0.10 14.41 16 4 H 0.00 0.06 7.58 -2.38 -0.02 0.04 16 5 C -0.55 -29.31 8.73 25.60 0.22 -29.08 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 1.05 5.29 84.66 0.45 1.50 16 8 N -0.91 -51.98 11.28 21.45 0.24 -51.74 16 9 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.70 -29.25 4.97 -449.14 -2.23 -31.48 16 14 C 0.54 22.01 6.34 86.74 0.55 22.56 16 15 O -0.57 -27.93 12.48 -3.92 -0.05 -27.98 16 16 C -0.20 -6.19 5.88 -20.05 -0.12 -6.31 16 17 C 0.04 0.92 9.01 22.53 0.20 1.13 16 18 C -0.69 -11.45 5.94 22.23 0.13 -11.32 16 19 S 2.74 41.23 6.28 -56.49 -0.35 40.88 16 20 N -1.23 -8.15 9.55 37.02 0.35 -7.80 16 21 O -0.99 -23.74 17.28 -128.00 -2.21 -25.95 16 22 O -0.98 -18.71 17.27 -128.00 -2.21 -20.92 16 23 C 0.04 0.55 9.51 22.31 0.21 0.76 16 24 C -0.17 -2.67 10.01 22.28 0.22 -2.45 16 25 C 0.19 5.12 7.29 22.67 0.17 5.28 16 26 F -0.12 -4.05 15.55 44.97 0.70 -3.35 16 27 H 0.02 1.26 7.84 -2.39 -0.02 1.24 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.79 5.65 -2.38 -0.01 1.77 16 30 H 0.08 4.13 5.94 -2.38 -0.01 4.11 16 31 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 33 H 0.40 14.32 6.57 -92.71 -0.61 13.71 16 34 H 0.16 3.50 5.96 -2.91 -0.02 3.49 16 35 H 0.43 0.92 8.92 -96.75 -0.86 0.05 16 36 H 0.43 1.51 8.96 -96.75 -0.87 0.64 16 37 H 0.20 1.05 7.60 -2.91 -0.02 1.03 16 38 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -80.34 335.11 -2.00 -82.34 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -1.18 Total: 15.99 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 2.92 Total: -14.22 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -1.64 Total: -91.02 kcal Atomic # 8 Polarization: -70.38 SS G_CDS: -4.47 Total: -74.85 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.70 Total: -3.35 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 41.23 SS G_CDS: -0.35 Total: 40.88 kcal Total: -80.34 -2.00 -82.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281149341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.261 kcal (2) G-P(sol) polarization free energy of solvation -80.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds