Wall clock time and date at job start Tue Mar 31 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21563 * 119.99915 * 359.97438 * 14 13 3 16 16 C 1.47689 * 119.99512 * 179.97438 * 14 13 3 17 17 C 1.39659 * 120.16906 * 359.72768 * 16 14 13 18 18 C 1.37861 * 119.87495 * 179.74600 * 17 16 14 19 19 S 1.76200 * 119.89126 * 180.23132 * 18 17 16 20 20 N 1.65603 * 107.21752 * 270.29765 * 19 18 17 21 21 O 1.42106 * 106.39934 * 23.83268 * 19 18 17 22 22 O 1.42096 * 106.40729 * 156.75399 * 19 18 17 23 23 C 1.38462 * 120.21933 * 0.52276 * 18 17 16 24 24 C 1.38195 * 120.33923 * 359.72775 * 23 18 17 25 25 C 1.38322 * 120.11965 * 0.02562 * 24 23 18 26 26 F 1.35104 * 120.11261 * 179.97438 * 25 24 23 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 34 34 H 1.07991 * 120.06216 * 359.97438 * 17 16 14 35 35 H 0.96993 * 120.00259 * 149.99828 * 20 19 18 36 36 H 0.97000 * 119.99549 * 329.99385 * 20 19 18 37 37 H 1.08005 * 119.83052 * 179.70216 * 23 18 17 38 38 H 1.07999 * 119.94298 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3414 2.6319 -0.4323 16 6 0.0447 3.3250 -2.6289 17 6 0.9362 3.3693 -3.7030 18 6 0.5635 3.9829 -4.8799 19 16 1.6857 4.0337 -6.2374 20 7 2.5843 5.4157 -6.0792 21 8 2.5843 2.9479 -6.0559 22 8 0.8947 4.2010 -7.4060 23 6 -0.6875 4.5648 -4.9967 24 6 -1.5748 4.5308 -3.9378 25 6 -1.2173 3.9144 -2.7522 26 9 -2.0847 3.8816 -1.7169 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8770 0.4827 2.1133 33 1 2.2720 2.1231 -1.9978 34 1 1.9143 2.9204 -3.6131 35 1 3.4941 5.4437 -6.4142 36 1 2.2007 6.1972 -5.6514 37 1 -0.9711 5.0481 -5.9200 38 1 -2.5487 4.9871 -4.0357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281149347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:50 Heat of formation + Delta-G solvation = -123.207372 kcal Electronic energy + Delta-G solvation = -26399.900748 eV Core-core repulsion = 22284.303761 eV Total energy + Delta-G solvation = -4115.596987 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.16217 -40.06640 -38.51161 -37.43495 -36.10695 -35.44076 -33.50873 -32.84046 -32.07177 -31.26566 -30.89992 -27.59068 -24.56104 -23.58394 -22.69295 -21.40291 -19.90676 -19.70776 -18.90064 -17.88857 -17.69703 -17.33223 -16.99793 -16.42306 -16.00014 -15.87220 -15.58926 -15.30663 -14.89175 -14.67530 -14.26871 -13.78069 -13.56671 -13.38596 -13.07895 -12.93610 -12.46003 -12.39198 -12.37131 -12.28552 -11.98241 -11.94539 -11.82895 -11.39169 -11.13986 -10.96241 -10.79798 -10.67565 -9.97619 -9.69799 -9.62506 -9.46327 -9.35855 -9.27925 -8.80598 -8.20457 -6.24841 -4.28139 -0.00352 0.23975 0.51873 2.46458 2.88384 3.21083 3.33071 3.35428 3.37398 3.51999 3.61056 3.77831 4.02539 4.28018 4.31925 4.42207 4.83640 4.95085 5.07989 5.08536 5.26890 5.43847 5.56064 5.64067 5.66398 5.91949 5.98615 6.12565 6.24431 6.60525 6.64834 6.70612 6.76536 6.89576 7.13104 7.21822 7.42397 8.01571 8.39784 8.64295 8.76707 9.34896 10.87003 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.003998 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.756306 B = 7001.844344 C = 8409.848559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.243 3.757 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.082 0.918 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.690 5.690 14 C 0.543 3.457 15 O -0.530 6.530 16 C -0.181 4.181 17 C 0.044 3.956 18 C -0.702 4.702 19 S 2.707 3.293 20 N -1.247 6.247 21 O -0.953 6.953 22 O -0.960 6.960 23 C 0.023 3.977 24 C -0.186 4.186 25 C 0.214 3.786 26 F -0.102 7.102 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.268 0.732 33 H 0.395 0.605 34 H 0.158 0.842 35 H 0.423 0.577 36 H 0.417 0.583 37 H 0.156 0.844 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 10.266 -15.180 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.140 3.860 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.100 0.900 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.338 5.338 14 C 0.327 3.673 15 O -0.408 6.408 16 C -0.186 4.186 17 C 0.024 3.976 18 C -0.789 4.789 19 S 2.794 3.206 20 N -0.922 5.922 21 O -0.943 6.943 22 O -0.950 6.950 23 C 0.003 3.997 24 C -0.205 4.205 25 C 0.192 3.808 26 F -0.080 7.080 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.230 0.770 34 H 0.175 0.825 35 H 0.253 0.747 36 H 0.245 0.755 37 H 0.173 0.827 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.399 9.357 -15.000 20.511 hybrid contribution -0.388 0.077 1.329 1.386 sum -10.787 9.434 -13.671 19.806 Atomic orbital electron populations 1.21884 0.96925 0.99214 1.02187 1.22305 0.94365 0.99776 1.01402 1.19249 0.95927 0.88610 0.82257 0.92970 1.21015 0.88340 1.40195 1.08032 0.90016 1.24812 0.94867 0.95037 0.97622 1.69859 1.08668 1.44265 1.29798 0.86915 0.80946 0.80038 0.80915 1.20153 1.22099 1.18468 1.46154 1.14161 1.55156 1.18376 1.17800 0.83408 0.79814 0.86254 1.90823 1.51189 1.59561 1.39254 1.20559 0.94879 1.05600 0.97550 1.21109 0.98739 0.88868 0.88928 1.30717 1.13540 1.16397 1.18229 1.01508 0.73119 0.72733 0.73272 1.53102 1.29182 1.31508 1.78364 1.93649 1.63298 1.51467 1.85875 1.93615 1.70847 1.85723 1.44769 1.20940 0.90052 0.90709 0.97987 1.21265 1.02579 1.04436 0.92247 1.18034 0.86216 0.92128 0.84372 1.91652 1.67220 1.92982 1.56114 0.94780 0.93135 0.92778 0.92530 0.92045 0.92202 0.77010 0.82469 0.74651 0.75550 0.82692 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.64 1.83 -69.08 -0.13 5.52 16 4 H 0.05 1.33 6.64 -51.93 -0.34 0.99 16 5 C -0.54 -14.21 9.31 -34.44 -0.32 -14.53 16 6 H 0.08 2.26 7.98 -52.48 -0.42 1.84 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 8 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 9 Si 0.88 21.44 24.41 -169.99 -4.15 17.29 16 10 H -0.27 -6.49 6.83 56.52 0.39 -6.10 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.69 -13.42 4.97 -55.93 -0.28 -13.70 16 14 C 0.54 10.14 6.34 -12.40 -0.08 10.06 16 15 O -0.53 -11.49 12.47 5.31 0.07 -11.42 16 16 C -0.18 -2.63 5.88 -104.91 -0.62 -3.24 16 17 C 0.04 0.52 9.01 -39.19 -0.35 0.16 16 18 C -0.70 -6.62 5.97 -39.64 -0.24 -6.86 16 19 S 2.71 23.74 6.28 -107.50 -0.67 23.07 16 20 N -1.25 -6.30 9.52 60.35 0.57 -5.73 16 21 O -0.95 -11.96 17.28 -57.17 -0.99 -12.95 16 22 O -0.96 -10.60 17.27 -57.17 -0.99 -11.59 16 23 C 0.02 0.18 9.51 -39.51 -0.38 -0.19 16 24 C -0.19 -1.70 10.01 -39.57 -0.40 -2.10 16 25 C 0.21 2.80 7.29 -38.96 -0.28 2.52 16 26 F -0.10 -1.56 15.55 2.25 0.04 -1.53 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 1.00 5.64 -51.93 -0.29 0.71 16 29 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 30 H 0.06 1.31 3.21 -51.93 -0.17 1.14 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.40 6.74 6.57 -40.82 -0.27 6.47 16 34 H 0.16 1.76 5.96 -52.49 -0.31 1.45 16 35 H 0.42 1.62 8.96 -34.47 -0.31 1.31 16 36 H 0.42 1.14 8.96 -34.47 -0.31 0.83 16 37 H 0.16 0.81 7.60 -52.48 -0.40 0.41 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -36.30 328.42 -7.06 -43.36 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -3.68 Total: 5.76 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -2.71 Total: -12.36 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 1.07 Total: -44.59 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.91 Total: -35.96 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.15 Total: 17.29 kcal Atomic # 16 Polarization: 23.74 SS G_CDS: -0.67 Total: 23.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.30 -7.06 -43.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281149347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.843 kcal (2) G-P(sol) polarization free energy of solvation -36.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds