Wall clock time and date at job start Tue Mar 31 2020 06:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21563 * 119.99915 * 359.97438 * 14 13 3 16 16 C 1.47689 * 119.99512 * 179.97438 * 14 13 3 17 17 C 1.39659 * 120.16906 * 359.72768 * 16 14 13 18 18 C 1.37861 * 119.87495 * 179.74600 * 17 16 14 19 19 S 1.76200 * 119.89126 * 180.23132 * 18 17 16 20 20 N 1.65603 * 107.21752 * 270.29765 * 19 18 17 21 21 O 1.42106 * 106.39934 * 23.83268 * 19 18 17 22 22 O 1.42096 * 106.40729 * 156.75399 * 19 18 17 23 23 C 1.38462 * 120.21933 * 0.52276 * 18 17 16 24 24 C 1.38195 * 120.33923 * 359.72775 * 23 18 17 25 25 C 1.38322 * 120.11965 * 0.02562 * 24 23 18 26 26 F 1.35104 * 120.11261 * 179.97438 * 25 24 23 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 34 34 H 1.07991 * 120.06216 * 359.97438 * 17 16 14 35 35 H 0.96993 * 120.00259 * 149.99828 * 20 19 18 36 36 H 0.97000 * 119.99549 * 329.99385 * 20 19 18 37 37 H 1.08005 * 119.83052 * 179.70216 * 23 18 17 38 38 H 1.07999 * 119.94298 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3414 2.6319 -0.4323 16 6 0.0447 3.3250 -2.6289 17 6 0.9362 3.3693 -3.7030 18 6 0.5635 3.9829 -4.8799 19 16 1.6857 4.0337 -6.2374 20 7 2.5843 5.4157 -6.0792 21 8 2.5843 2.9479 -6.0559 22 8 0.8947 4.2010 -7.4060 23 6 -0.6875 4.5648 -4.9967 24 6 -1.5748 4.5308 -3.9378 25 6 -1.2173 3.9144 -2.7522 26 9 -2.0847 3.8816 -1.7169 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8770 0.4827 2.1133 33 1 2.2720 2.1231 -1.9978 34 1 1.9143 2.9204 -3.6131 35 1 3.4941 5.4437 -6.4142 36 1 2.2007 6.1972 -5.6514 37 1 -0.9711 5.0481 -5.9200 38 1 -2.5487 4.9871 -4.0357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281149347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:49 Heat of formation + Delta-G solvation = -154.213002 kcal Electronic energy + Delta-G solvation = -26401.245253 eV Core-core repulsion = 22284.303761 eV Total energy + Delta-G solvation = -4116.941492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.20745 -41.34158 -39.67398 -38.27180 -37.18871 -36.94219 -34.54624 -34.02305 -33.76934 -32.17874 -32.12567 -29.45827 -25.72990 -24.67995 -24.28927 -22.79397 -21.47883 -20.65034 -19.97210 -18.78759 -18.74476 -18.32768 -18.13642 -17.69674 -17.27152 -16.99536 -16.97747 -16.28227 -16.12542 -16.09805 -15.67699 -15.10713 -14.78218 -14.51364 -14.48630 -14.22579 -13.90995 -13.73791 -13.60979 -13.23924 -13.21043 -13.14702 -13.00988 -12.89144 -12.76559 -12.45053 -12.21138 -11.89236 -11.44564 -11.31397 -11.28452 -10.95825 -10.87116 -10.49253 -10.44131 -9.88992 -8.39624 -6.45698 -0.81093 -0.59092 -0.36793 1.26028 1.34119 1.43569 1.49325 2.14627 2.16783 2.24510 2.33451 2.71093 2.84051 2.95926 3.17941 3.45766 3.55970 3.90665 3.98917 4.17993 4.24782 4.26951 4.38938 4.46791 4.59766 4.73524 4.75436 4.81494 4.95019 5.05408 5.16487 5.31847 5.33155 5.40800 5.46186 5.53640 6.08867 6.39270 6.54424 6.69417 7.12087 7.27586 8.75346 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.003998 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.756306 B = 7001.844344 C = 8409.848559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 C 0.249 3.751 4 H 0.027 0.973 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.934 3.066 10 H -0.260 1.260 11 H -0.292 1.292 12 H -0.261 1.261 13 N -0.693 5.693 14 C 0.542 3.458 15 O -0.565 6.565 16 C -0.205 4.205 17 C 0.040 3.960 18 C -0.694 4.694 19 S 2.735 3.265 20 N -1.232 6.232 21 O -0.993 6.993 22 O -0.977 6.977 23 C 0.041 3.959 24 C -0.167 4.167 25 C 0.193 3.807 26 F -0.122 7.122 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.271 0.729 33 H 0.405 0.595 34 H 0.157 0.843 35 H 0.431 0.569 36 H 0.431 0.569 37 H 0.196 0.804 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.692 11.188 -17.248 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.177 4.177 3 C 0.145 3.855 4 H 0.045 0.955 5 C -0.574 4.574 6 H 0.077 0.923 7 C -0.167 4.167 8 N -0.569 5.569 9 Si 0.761 3.239 10 H -0.185 1.185 11 H -0.219 1.219 12 H -0.185 1.185 13 N -0.342 5.342 14 C 0.330 3.670 15 O -0.446 6.446 16 C -0.210 4.210 17 C 0.020 3.980 18 C -0.780 4.780 19 S 2.821 3.179 20 N -0.912 5.912 21 O -0.982 6.982 22 O -0.966 6.966 23 C 0.022 3.978 24 C -0.187 4.187 25 C 0.172 3.828 26 F -0.100 7.100 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.242 0.758 34 H 0.174 0.826 35 H 0.264 0.736 36 H 0.261 0.739 37 H 0.213 0.787 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.121 10.296 -17.097 23.350 hybrid contribution 0.165 -0.067 1.813 1.822 sum -11.956 10.229 -15.284 21.936 Atomic orbital electron populations 1.21767 0.95328 1.00665 1.01426 1.22233 0.95739 0.98439 1.01332 1.18883 0.93630 0.89701 0.83313 0.95483 1.21239 0.89990 1.38970 1.07179 0.92261 1.25499 0.95710 0.95739 0.99717 1.69963 1.10191 1.45906 1.30823 0.86069 0.79329 0.80000 0.78459 1.18541 1.21916 1.18546 1.45966 1.15164 1.55586 1.17494 1.18348 0.82326 0.78919 0.87429 1.90790 1.51986 1.60840 1.41008 1.20203 0.96606 1.07885 0.96331 1.21091 0.98382 0.89309 0.89183 1.30833 1.14516 1.15601 1.17068 1.00549 0.72400 0.72527 0.72454 1.52733 1.29417 1.30731 1.78288 1.93605 1.64383 1.53960 1.86278 1.93600 1.71416 1.86127 1.45443 1.21491 0.88648 0.88728 0.98905 1.21647 1.04073 1.02592 0.90344 1.18402 0.85619 0.93374 0.85374 1.91602 1.67671 1.93345 1.57332 0.92096 0.93222 0.94262 0.93405 0.91193 0.91990 0.75837 0.82594 0.73563 0.73850 0.78682 0.79396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.51 71.98 0.61 -4.72 16 2 C -0.14 -6.08 5.11 30.60 0.16 -5.93 16 3 C 0.25 11.83 1.83 44.25 0.08 11.91 16 4 H 0.03 1.43 6.64 -2.39 -0.02 1.42 16 5 C -0.54 -29.09 9.31 25.60 0.24 -28.85 16 6 H 0.06 3.40 7.98 -2.91 -0.02 3.38 16 7 C 0.03 1.89 5.45 84.66 0.46 2.35 16 8 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 9 Si 0.93 44.66 24.41 68.60 1.67 46.33 16 10 H -0.26 -11.71 6.83 99.48 0.68 -11.03 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.26 -12.41 6.53 99.48 0.65 -11.76 16 13 N -0.69 -27.60 4.97 -449.12 -2.23 -29.83 16 14 C 0.54 20.68 6.34 86.74 0.55 21.23 16 15 O -0.57 -25.19 12.47 -3.91 -0.05 -25.23 16 16 C -0.21 -5.89 5.88 -20.05 -0.12 -6.01 16 17 C 0.04 0.92 9.01 22.52 0.20 1.12 16 18 C -0.69 -11.23 5.97 22.23 0.13 -11.10 16 19 S 2.73 41.43 6.28 -56.49 -0.35 41.07 16 20 N -1.23 -9.07 9.52 37.02 0.35 -8.72 16 21 O -0.99 -23.79 17.28 -128.00 -2.21 -26.00 16 22 O -0.98 -18.48 17.27 -128.00 -2.21 -20.69 16 23 C 0.04 0.49 9.51 22.31 0.21 0.70 16 24 C -0.17 -2.45 10.01 22.28 0.22 -2.23 16 25 C 0.19 4.82 7.29 22.68 0.17 4.98 16 26 F -0.12 -3.69 15.55 44.97 0.70 -2.99 16 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.96 5.64 -2.39 -0.01 1.94 16 29 H 0.04 1.65 7.84 -2.38 -0.02 1.63 16 30 H 0.05 2.17 3.21 -2.39 -0.01 2.16 16 31 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.41 14.24 6.57 -92.71 -0.61 13.63 16 34 H 0.16 3.48 5.96 -2.91 -0.02 3.46 16 35 H 0.43 2.24 8.96 -96.75 -0.87 1.37 16 36 H 0.43 0.92 8.96 -96.75 -0.87 0.05 16 37 H 0.20 0.85 7.60 -2.91 -0.02 0.83 16 38 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -80.65 328.42 -2.37 -83.02 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -1.26 Total: 14.73 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 2.92 Total: -16.53 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -1.58 Total: -93.69 kcal Atomic # 8 Polarization: -67.46 SS G_CDS: -4.47 Total: -71.93 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.70 Total: -2.99 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.67 Total: 46.33 kcal Atomic # 16 Polarization: 41.43 SS G_CDS: -0.35 Total: 41.07 kcal Total: -80.65 -2.37 -83.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281149347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.193 kcal (2) G-P(sol) polarization free energy of solvation -80.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds