Wall clock time and date at job start Tue Mar 31 2020 06:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 N 1.46501 * 109.47411 * 180.02562 * 3 2 1 5 5 C 1.36892 * 119.99841 * 264.89658 * 4 3 2 6 6 H 1.07995 * 119.99424 * 137.30142 * 5 4 3 7 7 C 1.39032 * 120.00258 * 317.29708 * 5 4 3 8 8 N 1.31380 * 119.99767 * 349.93426 * 7 5 4 9 9 Si 1.86796 * 120.00064 * 169.93074 * 7 5 4 10 10 H 1.48500 * 109.46970 * 90.00258 * 9 7 5 11 11 H 1.48501 * 109.47169 * 209.99894 * 9 7 5 12 12 H 1.48491 * 109.47162 * 330.00112 * 9 7 5 13 13 C 1.34775 * 119.99790 * 84.89035 * 4 3 2 14 14 O 1.21608 * 120.00283 * 5.11919 * 13 4 3 15 15 C 1.47585 * 119.99942 * 185.10887 * 13 4 3 16 16 C 1.39723 * 120.17284 * 319.39255 * 15 13 4 17 17 C 1.37834 * 119.86893 * 179.71654 * 16 15 13 18 18 S 1.76206 * 119.88600 * 180.29357 * 17 16 15 19 19 N 1.65594 * 107.22135 * 270.25883 * 18 17 16 20 20 O 1.42100 * 106.40323 * 23.80188 * 18 17 16 21 21 O 1.42104 * 106.40161 * 156.71779 * 18 17 16 22 22 C 1.38471 * 120.22461 * 0.55450 * 17 16 15 23 23 C 1.38215 * 120.35212 * 359.72255 * 22 17 16 24 24 C 1.38296 * 120.12344 * 359.97438 * 23 22 17 25 25 F 1.35106 * 120.11178 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47779 * 60.00176 * 1 2 3 27 27 H 1.09004 * 109.46777 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47015 * 299.99639 * 1 2 3 29 29 H 1.09000 * 109.47015 * 240.00361 * 2 1 3 30 30 H 1.08992 * 109.47407 * 120.00008 * 2 1 3 31 31 H 1.08996 * 109.47453 * 60.00214 * 3 2 1 32 32 H 1.09008 * 109.47336 * 300.00567 * 3 2 1 33 33 H 0.96993 * 119.99789 * 180.02562 * 8 7 5 34 34 H 1.08002 * 120.05981 * 359.96963 * 16 15 13 35 35 H 0.96996 * 119.99932 * 149.99923 * 19 18 17 36 36 H 0.96997 * 119.99766 * 330.00107 * 19 18 17 37 37 H 1.08003 * 119.82065 * 179.69659 * 22 17 16 38 38 H 1.08005 * 119.93975 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1899 1.5480 1.1799 6 1 5.0552 0.9273 1.3593 7 6 3.7715 2.4540 2.1479 8 7 2.8487 3.3437 1.8598 9 14 4.5213 2.4064 3.8581 10 1 5.7133 3.2911 3.9008 11 1 3.5211 2.8754 4.8505 12 1 4.9257 1.0150 4.1827 13 6 4.1783 1.3389 -1.1635 14 8 3.5735 1.3390 -2.2185 15 6 5.6498 1.2255 -1.1566 16 6 6.4093 1.9954 -0.2719 17 6 7.7828 1.8801 -0.2667 18 16 8.7406 2.8452 0.8541 19 7 9.1019 4.2692 0.0900 20 8 7.8798 3.1769 1.9349 21 8 9.9724 2.1574 1.0244 22 6 8.4128 1.0126 -1.1430 23 6 7.6709 0.2508 -2.0259 24 6 6.2916 0.3504 -2.0392 25 9 5.5666 -0.3940 -2.9028 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6765 1.9564 -0.8900 33 1 2.5571 3.9760 2.5350 34 1 5.9208 2.6764 0.4093 35 1 9.2209 5.0807 0.6077 36 1 9.1945 4.2917 -0.8753 37 1 9.4898 0.9311 -1.1367 38 1 8.1692 -0.4234 -2.7068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281296098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:24 Heat of formation + Delta-G solvation = -127.005353 kcal Electronic energy + Delta-G solvation = -27145.793491 eV Core-core repulsion = 23030.031812 eV Total energy + Delta-G solvation = -4115.761680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.68352 -39.45460 -37.83667 -36.97816 -35.66144 -35.21719 -33.16001 -33.02641 -31.66414 -30.73885 -30.60268 -26.04782 -25.05597 -23.21135 -22.91280 -21.01957 -19.80348 -19.24662 -18.41846 -17.44720 -17.28616 -16.76079 -16.63481 -15.97743 -15.75248 -15.31088 -14.99295 -14.62541 -14.54251 -14.02980 -13.74113 -13.64101 -13.26270 -13.04211 -12.87093 -12.58351 -12.17565 -12.03815 -11.92696 -11.83533 -11.59943 -11.48338 -11.37423 -11.15098 -10.92633 -10.82051 -10.75886 -10.42232 -10.38083 -10.32215 -9.80010 -9.20963 -8.98364 -8.87427 -8.59910 -7.58784 -6.47286 -4.28365 0.49993 0.82424 1.27139 3.05060 3.20861 3.28628 3.33778 3.41945 3.79269 3.99463 4.08840 4.31182 4.51049 4.62214 4.87775 4.93237 5.12312 5.48440 5.54231 5.75115 5.80199 5.80836 5.97566 5.98833 6.02567 6.16790 6.25461 6.44345 6.49018 6.51756 6.62727 6.77079 6.92221 7.04113 7.05334 7.24855 7.41309 7.81841 8.22305 8.91117 9.27746 9.72764 10.51567 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.006311 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.724233 B = 4435.609645 C = 6351.427356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.115 3.885 4 N -0.421 5.421 5 C -0.355 4.355 6 H 0.090 0.910 7 C 0.056 3.944 8 N -0.856 5.856 9 Si 0.901 3.099 10 H -0.248 1.248 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.505 3.495 14 O -0.589 6.589 15 C -0.145 4.145 16 C 0.067 3.933 17 C -0.711 4.711 18 S 2.699 3.301 19 N -1.249 6.249 20 O -0.947 6.947 21 O -0.969 6.969 22 C 0.006 3.994 23 C -0.192 4.192 24 C 0.187 3.813 25 F -0.119 7.119 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.055 0.945 33 H 0.274 0.726 34 H 0.180 0.820 35 H 0.419 0.581 36 H 0.416 0.584 37 H 0.146 0.854 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.228 0.179 -2.804 9.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.008 4.008 4 N -0.137 5.137 5 C -0.482 4.482 6 H 0.108 0.892 7 C -0.152 4.152 8 N -0.491 5.491 9 Si 0.725 3.275 10 H -0.172 1.172 11 H -0.208 1.208 12 H -0.192 1.192 13 C 0.293 3.707 14 O -0.475 6.475 15 C -0.150 4.150 16 C 0.047 3.953 17 C -0.799 4.799 18 S 2.788 3.212 19 N -0.922 5.922 20 O -0.937 6.937 21 O -0.958 6.958 22 C -0.013 4.013 23 C -0.212 4.212 24 C 0.166 3.834 25 F -0.097 7.097 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.197 0.803 35 H 0.249 0.751 36 H 0.242 0.758 37 H 0.164 0.836 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.940 -0.086 -2.256 9.221 hybrid contribution -0.127 -0.091 -0.152 0.218 sum 8.813 -0.178 -2.408 9.138 Atomic orbital electron populations 1.21641 0.96344 1.00509 1.01476 1.21858 0.94969 0.99327 1.01315 1.21535 0.80711 0.94550 1.03958 1.43302 1.05088 1.60856 1.04427 1.19476 1.13877 1.21353 0.93497 0.89244 1.25435 0.95956 0.93470 1.00322 1.69801 1.28340 1.15940 1.34999 0.86283 0.80026 0.80140 0.81050 1.17185 1.20778 1.19208 1.17975 0.85385 0.82520 0.84831 1.90674 1.69121 1.56594 1.31096 1.20368 0.96567 0.99738 0.98316 1.21720 0.90152 0.93022 0.90361 1.30591 1.07637 1.19966 1.21749 1.01630 0.73773 0.72768 0.73054 1.53163 1.91110 1.27991 1.19982 1.93683 1.66729 1.82919 1.50324 1.93582 1.44059 1.73698 1.84481 1.20752 1.00033 0.90667 0.89877 1.21039 0.91601 1.04753 1.03766 1.18079 0.89201 0.88930 0.87217 1.91559 1.77925 1.73495 1.66680 0.93086 0.93590 0.92880 0.93027 0.92260 0.87135 0.92636 0.91548 0.80319 0.75078 0.75781 0.83587 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.91 37.16 0.37 -2.00 16 2 C -0.14 -2.78 6.22 -26.73 -0.17 -2.94 16 3 C 0.12 2.71 4.90 -4.04 -0.02 2.69 16 4 N -0.42 -10.44 2.50 -115.98 -0.29 -10.73 16 5 C -0.35 -8.73 6.29 -15.00 -0.09 -8.83 16 6 H 0.09 2.17 6.60 -52.49 -0.35 1.82 16 7 C 0.06 1.38 5.14 -17.45 -0.09 1.29 16 8 N -0.86 -21.65 11.23 55.50 0.62 -21.03 16 9 Si 0.90 19.73 29.57 -169.99 -5.03 14.70 16 10 H -0.25 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.50 12.48 7.13 -12.45 -0.09 12.40 16 14 O -0.59 -15.83 15.92 5.27 0.08 -15.74 16 15 C -0.14 -3.06 5.33 -104.91 -0.56 -3.62 16 16 C 0.07 1.28 7.30 -39.17 -0.29 1.00 16 17 C -0.71 -10.91 5.97 -39.64 -0.24 -11.15 16 18 S 2.70 37.68 6.28 -107.50 -0.67 37.01 16 19 N -1.25 -11.58 9.52 60.35 0.57 -11.00 16 20 O -0.95 -17.18 17.28 -57.17 -0.99 -18.17 16 21 O -0.97 -15.00 17.27 -57.17 -0.99 -15.98 16 22 C 0.01 0.09 9.51 -39.50 -0.38 -0.29 16 23 C -0.19 -2.73 10.01 -39.57 -0.40 -3.13 16 24 C 0.19 3.46 7.25 -38.94 -0.28 3.18 16 25 F -0.12 -2.34 16.26 2.25 0.04 -2.31 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.11 2.71 5.56 -51.93 -0.29 2.42 16 32 H 0.06 1.36 7.51 -51.92 -0.39 0.97 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.18 3.75 5.72 -52.49 -0.30 3.45 16 35 H 0.42 3.15 8.96 -34.46 -0.31 2.85 16 36 H 0.42 2.79 8.96 -34.46 -0.31 2.48 16 37 H 0.15 1.48 7.60 -52.48 -0.40 1.08 16 38 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -33.03 340.10 -7.76 -40.80 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.01 Total: 8.73 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -2.23 Total: -11.40 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.91 Total: -42.76 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -1.89 Total: -49.90 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Atomic # 16 Polarization: 37.68 SS G_CDS: -0.67 Total: 37.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.03 -7.76 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281296098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.210 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds