Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46752 * 255.13916 * 3 2 1 5 5 C 1.36933 * 120.00574 * 262.66777 * 4 3 2 6 6 H 1.07998 * 120.00883 * 211.27372 * 5 4 3 7 7 C 1.38817 * 119.99562 * 31.27544 * 5 4 3 8 8 N 1.31619 * 120.00129 * 6.26762 * 7 5 4 9 9 Si 1.86800 * 120.00153 * 186.27571 * 7 5 4 10 10 H 1.48507 * 109.47230 * 89.99296 * 9 7 5 11 11 H 1.48498 * 109.47154 * 209.99852 * 9 7 5 12 12 H 1.48504 * 109.46623 * 329.99746 * 9 7 5 13 13 C 1.46509 * 119.99694 * 82.67461 * 4 3 2 14 14 C 1.50693 * 109.47003 * 269.99400 * 13 4 3 15 15 O 1.21278 * 120.00330 * 0.02562 * 14 13 4 16 16 N 1.34774 * 120.00153 * 180.02562 * 14 13 4 17 17 C 1.46504 * 120.00181 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46927 * 183.63660 * 17 16 14 19 19 H 1.09001 * 109.47365 * 54.16708 * 18 17 16 20 20 C 1.50704 * 109.47060 * 174.16456 * 18 17 16 21 21 C 1.38237 * 119.99612 * 75.04025 * 20 18 17 22 22 C 1.38239 * 119.99409 * 179.81117 * 21 20 18 23 23 C 1.38235 * 120.00383 * 0.39981 * 22 21 20 24 24 C 1.38235 * 119.99757 * 359.85733 * 23 22 21 25 25 C 1.38235 * 119.99975 * 255.31694 * 20 18 17 26 26 N 1.46897 * 109.47139 * 294.16346 * 18 17 16 27 27 C 1.46900 * 111.00124 * 333.21332 * 26 18 17 28 28 C 1.46904 * 110.99845 * 97.16691 * 26 18 17 29 29 H 4.40632 * 5.51397 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47046 * 135.14052 * 3 2 1 31 31 H 1.08998 * 109.47175 * 15.13859 * 3 2 1 32 32 H 0.96997 * 120.00424 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.46817 * 149.99654 * 13 4 3 34 34 H 1.08993 * 109.47102 * 29.99587 * 13 4 3 35 35 H 0.97002 * 120.00362 * 0.02562 * 16 14 13 36 36 H 1.08998 * 109.47319 * 63.63740 * 17 16 14 37 37 H 1.09003 * 109.46784 * 303.63354 * 17 16 14 38 38 H 1.07999 * 120.00293 * 359.97438 * 21 20 18 39 39 H 1.08002 * 119.99606 * 180.23284 * 22 21 20 40 40 H 1.07995 * 120.00011 * 179.83356 * 23 22 21 41 41 H 1.08004 * 120.00164 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.00100 * 359.97438 * 25 20 18 43 43 H 1.08996 * 109.46904 * 182.28894 * 27 26 18 44 44 H 1.08998 * 109.46767 * 62.29063 * 27 26 18 45 45 H 1.08995 * 109.47041 * 302.28982 * 27 26 18 46 46 H 1.08996 * 109.47157 * 300.42957 * 28 26 18 47 47 H 1.08998 * 109.47176 * 60.43022 * 28 26 18 48 48 H 1.08996 * 109.46934 * 180.42893 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.3551 1.3350 5 6 3.5045 1.6447 1.6087 6 1 4.2873 1.8412 2.3263 7 6 2.8736 2.6997 0.9636 8 7 1.8388 2.4698 0.1835 9 14 3.4935 4.4455 1.2026 10 1 4.5172 4.7529 0.1716 11 1 2.3595 5.3955 1.0729 12 1 4.0966 4.5760 2.5534 13 6 3.2262 -0.6703 2.3774 14 6 1.9291 -0.7268 3.1423 15 8 1.0173 0.0159 2.8458 16 7 1.7821 -1.6026 4.1561 17 6 0.5209 -1.6580 4.8994 18 6 0.6480 -2.6636 6.0454 19 1 1.5149 -2.4110 6.6560 20 6 -0.5957 -2.6167 6.8952 21 6 -1.7667 -3.1922 6.4388 22 6 -2.9065 -3.1525 7.2200 23 6 -2.8774 -2.5302 8.4540 24 6 -1.7078 -1.9501 8.9081 25 6 -0.5669 -1.9932 8.1287 26 7 0.8140 -4.0153 5.4947 27 6 0.2011 -4.1204 4.1638 28 6 2.2322 -4.3961 5.4528 29 1 -1.0500 0.0002 -0.0001 30 1 3.0091 0.7293 -0.7249 31 1 3.0099 -0.9912 -0.2684 32 1 1.3982 3.2069 -0.2676 33 1 4.0398 -0.4230 3.0594 34 1 3.4194 -1.6394 1.9176 35 1 2.5114 -2.1965 4.3936 36 1 -0.2817 -1.9689 4.2306 37 1 0.2945 -0.6718 5.3048 38 1 -1.7905 -3.6750 5.4730 39 1 -3.8205 -3.6054 6.8650 40 1 -3.7686 -2.4969 9.0631 41 1 -1.6851 -1.4635 9.8721 42 1 0.3470 -1.5400 8.4835 43 1 0.3028 -5.1416 3.7967 44 1 0.7014 -3.4364 3.4784 45 1 -0.8556 -3.8613 4.2290 46 1 2.7802 -3.6887 4.8304 47 1 2.6416 -4.3844 6.4629 48 1 2.3271 -5.3979 5.0339 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281542054.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = 109.047903 kcal Electronic energy + Delta-G solvation = -28554.059142 eV Core-core repulsion = 24805.934704 eV Total energy + Delta-G solvation = -3748.124438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.23045 -38.73991 -37.50829 -35.49575 -33.39025 -32.11110 -31.39899 -31.09275 -30.99458 -28.59844 -27.86298 -26.88147 -25.80283 -24.32872 -22.66623 -22.42614 -21.74414 -20.33892 -19.59136 -17.33931 -17.03235 -16.49114 -16.40353 -16.30343 -15.77069 -15.13774 -14.95046 -14.74378 -14.41546 -14.33410 -14.13898 -13.52990 -13.46317 -13.33659 -13.01982 -12.93699 -12.66049 -12.63978 -12.16377 -12.06627 -11.87313 -11.71378 -11.50539 -11.31743 -11.17533 -11.01189 -10.83419 -10.79045 -10.72653 -10.26633 -10.06783 -9.00672 -8.97329 -8.82930 -8.81891 -8.59100 -8.49296 -8.29977 -8.20627 -6.79619 -5.70635 -3.30501 1.27372 1.36076 3.37569 3.44958 3.46786 3.55532 3.66208 3.75284 3.92528 4.38231 4.56958 4.67595 4.71068 4.76402 4.82036 4.91918 4.99616 5.05569 5.10090 5.25089 5.34937 5.44783 5.46605 5.51821 5.63286 5.67925 5.68873 5.75767 5.82366 5.89254 5.90610 6.03192 6.04078 6.11413 6.16211 6.28277 6.39029 6.45621 6.52395 6.79098 6.82302 6.89086 6.93818 6.99723 7.24682 7.61833 7.77454 8.10182 8.40719 9.12242 9.23798 9.51047 9.76698 10.26482 11.29785 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.003134 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.268452 B = 8930.903715 C = 9420.759628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.089 4.089 3 C 0.275 3.725 4 N -0.557 5.557 5 C -0.278 4.278 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.872 5.872 9 Si 0.903 3.097 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.129 3.871 14 C 0.464 3.536 15 O -0.486 6.486 16 N -0.755 5.755 17 C 0.099 3.901 18 C 0.110 3.890 19 H 0.088 0.912 20 C -0.061 4.061 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.113 4.113 26 N -0.534 5.534 27 C 0.006 3.994 28 C 0.021 3.979 29 H 0.182 0.818 30 H 0.091 0.909 31 H 0.031 0.969 32 H 0.254 0.746 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.386 0.614 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.030 0.970 47 H 0.069 0.931 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 -15.476 13.179 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.092 4.092 3 C 0.150 3.850 4 N -0.275 5.275 5 C -0.407 4.407 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.512 5.512 9 Si 0.733 3.267 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.205 1.205 13 C -0.003 4.003 14 C 0.248 3.752 15 O -0.356 6.356 16 N -0.416 5.416 17 C -0.026 4.026 18 C 0.001 3.999 19 H 0.106 0.894 20 C -0.062 4.062 21 C -0.118 4.118 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.132 4.132 26 N -0.257 5.257 27 C -0.142 4.142 28 C -0.127 4.127 29 H 0.199 0.801 30 H 0.109 0.891 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.222 0.778 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.538 -15.047 13.075 20.246 hybrid contribution 0.316 1.441 0.036 1.475 sum -3.222 -13.607 13.111 19.168 Atomic orbital electron populations 1.23874 0.95044 1.08203 1.03925 1.23794 0.94891 0.93709 0.96811 1.17707 0.83357 0.96237 0.87702 1.43873 1.72968 1.06060 1.04565 1.19053 1.14283 0.81615 1.25768 0.91261 1.25326 0.95171 0.98084 0.99506 1.69984 1.19757 1.30223 1.31215 0.86313 0.77629 0.84841 0.77951 1.21290 1.21708 1.20497 1.21096 0.92861 0.94272 0.92022 1.23380 0.92970 0.79254 0.79642 1.90775 1.41538 1.38688 1.64560 1.46896 1.15795 1.42139 1.36726 1.21805 0.88648 0.99216 0.92956 1.20894 0.96321 0.87847 0.94828 0.89375 1.19556 0.94406 0.97804 0.94448 1.21199 0.92099 0.98474 1.00067 1.21153 0.98266 0.99843 0.94833 1.21122 0.97958 0.98721 0.96461 1.21072 0.93065 1.00078 0.99776 1.21010 0.98613 0.99459 0.94072 1.62184 1.15262 1.24190 1.24108 1.22776 1.00151 1.01822 0.89440 1.22556 0.87757 1.00761 1.01653 0.80112 0.89073 0.95087 0.93481 0.90837 0.91807 0.77840 0.91267 0.91607 0.85574 0.86271 0.86407 0.86238 0.86215 0.91577 0.93139 0.91082 0.95203 0.91243 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.35 18.72 29.55 0.55 -6.79 16 2 C -0.09 -2.30 9.62 -37.12 -0.36 -2.66 16 3 C 0.27 6.63 5.44 -6.83 -0.04 6.59 16 4 N -0.56 -13.68 2.08 -177.95 -0.37 -14.05 16 5 C -0.28 -7.54 9.58 -15.06 -0.14 -7.68 16 6 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 7 C 0.02 0.59 5.14 -17.43 -0.09 0.50 16 8 N -0.87 -25.60 9.28 55.49 0.52 -25.09 16 9 Si 0.90 22.01 29.56 -169.99 -5.02 16.99 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.13 2.55 6.17 -5.19 -0.03 2.52 16 14 C 0.46 9.54 7.78 -10.99 -0.09 9.45 16 15 O -0.49 -12.73 14.36 5.56 0.08 -12.65 16 16 N -0.75 -11.51 4.17 -60.29 -0.25 -11.76 16 17 C 0.10 1.46 4.27 -4.04 -0.02 1.44 16 18 C 0.11 1.25 2.31 -68.86 -0.16 1.09 16 19 H 0.09 0.94 7.46 -51.93 -0.39 0.55 16 20 C -0.06 -0.71 4.95 -104.62 -0.52 -1.23 16 21 C -0.10 -1.15 9.22 -39.58 -0.37 -1.52 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 25 C -0.11 -1.23 9.67 -39.58 -0.38 -1.62 16 26 N -0.53 -5.58 4.56 -244.59 -1.11 -6.70 16 27 C 0.01 0.06 7.89 60.06 0.47 0.54 16 28 C 0.02 0.18 9.23 60.07 0.55 0.74 16 29 H 0.18 4.05 7.80 -54.09 -0.42 3.63 16 30 H 0.09 2.36 6.91 -51.93 -0.36 2.00 16 31 H 0.03 0.64 8.00 -51.93 -0.42 0.23 16 32 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.32 8.04 -51.93 -0.42 0.91 16 34 H 0.06 1.06 7.97 -51.93 -0.41 0.65 16 35 H 0.39 4.74 5.43 -40.82 -0.22 4.52 16 36 H 0.07 1.11 6.01 -51.93 -0.31 0.79 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.13 1.39 4.93 -52.49 -0.26 1.13 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 42 H 0.12 1.13 8.00 -52.49 -0.42 0.71 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.65 5.68 -51.93 -0.29 0.36 16 45 H 0.07 0.78 4.76 -51.93 -0.25 0.54 16 46 H 0.03 0.26 5.28 -51.93 -0.27 -0.02 16 47 H 0.07 0.53 8.08 -51.93 -0.42 0.12 16 48 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -34.33 384.52 -9.11 -43.44 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.95 Total: 7.58 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.80 Total: -3.56 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -1.22 Total: -57.60 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.33 -9.11 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281542054.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.492 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds