Wall clock time and date at job start Tue Mar 31 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47186 * 51.02214 * 3 2 1 5 5 C 1.36939 * 120.00286 * 266.05853 * 4 3 2 6 6 H 1.08002 * 120.00350 * 200.72913 * 5 4 3 7 7 C 1.38815 * 119.99852 * 20.72771 * 5 4 3 8 8 N 1.31627 * 119.99679 * 10.73214 * 7 5 4 9 9 Si 1.86804 * 120.00193 * 190.72894 * 7 5 4 10 10 H 1.48497 * 109.46859 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46970 * 120.00020 * 9 7 5 12 12 H 1.48500 * 109.46919 * 240.00069 * 9 7 5 13 13 C 1.46501 * 120.00079 * 86.05888 * 4 3 2 14 14 C 1.50697 * 109.46970 * 269.99896 * 13 4 3 15 15 O 1.21277 * 120.00212 * 0.02562 * 14 13 4 16 16 N 1.34779 * 119.99692 * 179.97438 * 14 13 4 17 17 C 1.46504 * 119.99798 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46939 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.46450 * 294.99326 * 18 17 16 20 20 C 1.50698 * 109.47113 * 175.00042 * 18 17 16 21 21 C 1.38231 * 120.00352 * 128.37660 * 20 18 17 22 22 C 1.38235 * 120.00325 * 179.79345 * 21 20 18 23 23 C 1.38240 * 119.99957 * 0.43109 * 22 21 20 24 24 C 1.38236 * 119.99602 * 359.82339 * 23 22 21 25 25 C 1.38232 * 120.00139 * 359.97302 * 24 23 22 26 26 N 1.46891 * 109.47667 * 54.99520 * 18 17 16 27 27 C 1.46905 * 111.00041 * 61.53820 * 26 18 17 28 28 C 1.46897 * 111.00362 * 185.49422 * 26 18 17 29 29 H 4.40639 * 5.51350 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.46977 * 291.02598 * 3 2 1 31 31 H 1.08996 * 109.47324 * 171.02225 * 3 2 1 32 32 H 0.96999 * 119.99377 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47275 * 149.99850 * 13 4 3 34 34 H 1.09000 * 109.46961 * 30.00039 * 13 4 3 35 35 H 0.96995 * 120.00180 * 0.02562 * 16 14 13 36 36 H 1.08994 * 109.47241 * 60.00248 * 17 16 14 37 37 H 1.09000 * 109.47055 * 300.00101 * 17 16 14 38 38 H 1.08002 * 120.00016 * 359.97438 * 21 20 18 39 39 H 1.08002 * 120.00437 * 180.27932 * 22 21 20 40 40 H 1.07997 * 120.00014 * 179.84028 * 23 22 21 41 41 H 1.08000 * 119.99518 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.99997 * 180.02562 * 25 24 23 43 43 H 1.09006 * 109.46659 * 69.20195 * 27 26 18 44 44 H 1.09000 * 109.47325 * 189.20315 * 27 26 18 45 45 H 1.09003 * 109.46912 * 309.20831 * 27 26 18 46 46 H 1.08994 * 109.47332 * 59.99858 * 28 26 18 47 47 H 1.08999 * 109.47618 * 180.02562 * 28 26 18 48 48 H 1.09005 * 109.47154 * 299.99986 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8679 -1.0737 5 6 3.4404 -2.1765 -0.8103 6 1 4.0965 -2.7217 -1.4726 7 6 2.9070 -2.8023 0.3081 8 7 1.9495 -2.2168 0.9958 9 14 3.5480 -4.4752 0.8371 10 1 4.6168 -4.9134 -0.0959 11 1 4.1000 -4.3815 2.2126 12 1 2.4369 -5.4603 0.8157 13 6 3.2965 -0.3366 -2.4294 14 6 2.0157 -0.5282 -3.2001 15 8 1.0616 -1.0560 -2.6691 16 7 1.9303 -0.1119 -4.4791 17 6 0.6850 -0.2976 -5.2282 18 6 0.8539 0.2572 -6.6440 19 1 1.0034 1.3358 -6.5960 20 6 -0.3821 -0.0431 -7.4520 21 6 -1.0236 0.9718 -8.1371 22 6 -2.1550 0.6955 -8.8818 23 6 -2.6501 -0.5941 -8.9342 24 6 -2.0116 -1.6081 -8.2449 25 6 -0.8778 -1.3325 -7.5036 26 7 2.0195 -0.3708 -7.2803 27 6 1.8372 -1.8240 -7.3952 28 6 2.2911 0.2311 -8.5924 29 1 -1.0499 0.0000 -0.0003 30 1 3.0095 -0.3679 0.9593 31 1 3.0089 1.0158 -0.1604 32 1 1.5770 -2.6539 1.7775 33 1 4.1060 -0.8653 -2.9327 34 1 3.5337 0.7260 -2.3772 35 1 2.6932 0.3107 -4.9036 36 1 -0.1243 0.2311 -4.7246 37 1 0.4475 -1.3601 -5.2806 38 1 -0.6392 1.9801 -8.0929 39 1 -2.6536 1.4876 -9.4206 40 1 -3.5355 -0.8095 -9.5139 41 1 -2.3986 -2.6155 -8.2855 42 1 -0.3788 -2.1248 -6.9654 43 1 1.0581 -2.0356 -8.1277 44 1 2.7721 -2.2832 -7.7163 45 1 1.5459 -2.2313 -6.4270 46 1 2.4913 1.2954 -8.4695 47 1 3.1585 -0.2526 -9.0416 48 1 1.4247 0.0968 -9.2402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281542056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:47 Heat of formation + Delta-G solvation = 102.698146 kcal Electronic energy + Delta-G solvation = -28383.469099 eV Core-core repulsion = 24635.069315 eV Total energy + Delta-G solvation = -3748.399784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.41203 -38.57765 -37.30787 -35.51815 -33.64989 -31.77012 -31.29822 -31.25555 -31.02219 -28.68660 -27.81521 -26.76972 -25.77360 -24.25004 -22.75629 -22.63279 -21.66873 -20.16009 -19.47923 -17.33297 -17.05945 -16.35126 -16.32002 -16.26415 -15.85787 -15.18557 -14.87787 -14.81594 -14.54852 -14.37270 -14.16113 -13.63406 -13.52164 -13.14210 -12.99633 -12.88961 -12.75382 -12.28563 -12.28333 -12.09853 -11.98708 -11.58158 -11.43854 -11.27848 -11.23429 -11.16131 -10.94982 -10.78484 -10.61031 -10.13864 -9.94789 -9.13843 -9.04569 -8.93215 -8.69945 -8.53903 -8.48393 -8.23092 -8.10739 -6.84715 -5.63154 -3.13479 1.08794 1.17833 3.42102 3.47747 3.49318 3.51776 3.75160 3.81816 3.98095 4.44199 4.56656 4.60908 4.64914 4.77950 4.81159 4.87639 4.90083 5.05434 5.16371 5.22639 5.26672 5.36360 5.45417 5.51345 5.52339 5.69028 5.74386 5.77288 5.78275 5.81607 5.91853 5.95001 6.12618 6.19109 6.21919 6.26742 6.29001 6.34362 6.39955 6.76080 6.79298 6.85210 6.86253 7.20753 7.42013 7.71008 7.81847 8.30508 8.46673 9.20901 9.35387 9.59636 9.85506 10.30152 11.37534 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.002930 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.109849 B = 9553.622493 C = 9739.044785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.082 4.082 3 C 0.273 3.727 4 N -0.561 5.561 5 C -0.260 4.260 6 H 0.074 0.926 7 C 0.008 3.992 8 N -0.885 5.885 9 Si 0.906 3.094 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.292 1.292 13 C 0.130 3.870 14 C 0.465 3.535 15 O -0.501 6.501 16 N -0.739 5.739 17 C 0.135 3.865 18 C 0.111 3.889 19 H 0.094 0.906 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.108 4.108 26 N -0.524 5.524 27 C 0.008 3.992 28 C 0.023 3.977 29 H 0.181 0.819 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.252 0.748 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.397 0.603 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 7.571 -21.488 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.085 4.085 3 C 0.148 3.852 4 N -0.279 5.279 5 C -0.389 4.389 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.528 5.528 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.219 1.219 13 C -0.002 4.002 14 C 0.249 3.751 15 O -0.372 6.372 16 N -0.397 5.397 17 C 0.009 3.991 18 C 0.002 3.998 19 H 0.112 0.888 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.127 4.127 26 N -0.246 5.246 27 C -0.139 4.139 28 C -0.126 4.126 29 H 0.198 0.802 30 H 0.118 0.882 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.694 7.153 -20.539 21.915 hybrid contribution -0.887 -1.142 -0.706 1.609 sum -3.581 6.011 -21.245 22.368 Atomic orbital electron populations 1.23873 0.95065 1.07838 1.05198 1.23855 0.94907 0.93845 0.95902 1.17870 0.83287 0.90258 0.93772 1.44078 1.73640 1.09380 1.00812 1.19217 1.22635 0.88082 1.08987 0.90841 1.25076 0.96367 0.97848 0.99896 1.70042 1.25519 1.37834 1.19366 0.86169 0.77944 0.84111 0.78146 1.20378 1.21626 1.21880 1.21044 0.93208 0.98622 0.87327 1.23305 0.93132 0.78032 0.80679 1.90749 1.38564 1.39929 1.67951 1.46322 1.14796 1.65005 1.13533 1.21170 0.88840 1.00452 0.88609 1.21038 0.85757 0.99961 0.93034 0.88756 1.20466 0.97724 0.94004 0.99266 1.21064 0.95736 0.98659 0.97079 1.21129 0.96682 0.96789 0.99560 1.21170 0.99830 0.93219 0.99599 1.21183 0.95754 0.99410 0.97620 1.21346 0.95968 0.96641 0.98706 1.62344 1.35862 1.04491 1.21944 1.22776 1.01176 0.87973 1.02017 1.22385 1.00391 1.00167 0.89625 0.80166 0.88212 0.95195 0.93668 0.90630 0.91536 0.76926 0.91898 0.92210 0.86118 0.86151 0.86232 0.86032 0.85370 0.94517 0.91372 0.90517 0.91405 0.91384 0.95350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.81 18.85 29.55 0.56 -7.25 16 2 C -0.08 -2.18 9.82 -37.13 -0.36 -2.55 16 3 C 0.27 6.77 5.46 -6.83 -0.04 6.73 16 4 N -0.56 -14.04 2.08 -177.95 -0.37 -14.41 16 5 C -0.26 -7.14 9.70 -15.06 -0.15 -7.29 16 6 H 0.07 1.97 7.84 -52.49 -0.41 1.56 16 7 C 0.01 0.21 5.11 -17.43 -0.09 0.12 16 8 N -0.88 -26.18 8.90 55.49 0.49 -25.69 16 9 Si 0.91 22.25 29.57 -169.99 -5.03 17.22 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 C 0.13 2.60 6.19 -5.19 -0.03 2.57 16 14 C 0.46 9.67 7.84 -10.99 -0.09 9.58 16 15 O -0.50 -13.19 14.52 5.56 0.08 -13.11 16 16 N -0.74 -11.51 5.39 -60.29 -0.32 -11.83 16 17 C 0.13 1.95 4.54 -4.04 -0.02 1.93 16 18 C 0.11 1.20 2.27 -68.87 -0.16 1.04 16 19 H 0.09 0.95 7.88 -51.93 -0.41 0.54 16 20 C -0.11 -1.19 3.63 -104.63 -0.38 -1.57 16 21 C -0.11 -1.01 9.54 -39.59 -0.38 -1.39 16 22 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 23 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 25 C -0.11 -1.19 6.88 -39.58 -0.27 -1.46 16 26 N -0.52 -5.35 4.44 -244.59 -1.09 -6.44 16 27 C 0.01 0.09 7.85 60.07 0.47 0.56 16 28 C 0.02 0.19 9.36 60.06 0.56 0.75 16 29 H 0.18 4.16 7.80 -54.10 -0.42 3.73 16 30 H 0.10 2.66 6.47 -51.93 -0.34 2.32 16 31 H 0.03 0.64 7.95 -51.93 -0.41 0.23 16 32 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 34 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 35 H 0.40 5.15 8.14 -40.82 -0.33 4.82 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.96 5.28 -51.93 -0.27 0.68 16 38 H 0.12 0.95 7.96 -52.49 -0.42 0.53 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.13 1.44 5.01 -52.49 -0.26 1.18 16 43 H 0.04 0.37 5.59 -51.93 -0.29 0.08 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.95 5.55 -51.93 -0.29 0.66 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.03 0.25 7.16 -51.93 -0.37 -0.12 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -34.64 387.02 -9.11 -43.76 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.15 Total: 7.47 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.56 Total: -2.80 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -1.29 Total: -58.37 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.64 -9.11 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281542056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.457 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds