Wall clock time and date at job start Tue Mar 31 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47317 * 2 1 4 4 C 1.50699 * 109.47507 * 239.98918 * 2 1 3 5 5 H 1.07999 * 120.00359 * 240.00222 * 4 2 1 6 6 C 1.37880 * 119.99627 * 60.00796 * 4 2 1 7 7 N 1.31519 * 119.99912 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99937 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47391 * 89.99280 * 8 6 4 10 10 H 1.48504 * 109.47015 * 209.99788 * 8 6 4 11 11 H 1.48500 * 109.46779 * 329.99273 * 8 6 4 12 12 N 1.46507 * 109.46858 * 119.99302 * 2 1 3 13 13 C 1.46497 * 119.99897 * 59.99698 * 12 2 1 14 14 C 1.34778 * 119.99983 * 240.00213 * 12 2 1 15 15 O 1.21568 * 119.99907 * 5.00280 * 14 12 2 16 16 C 1.47692 * 119.99725 * 185.00041 * 14 12 2 17 17 C 1.39656 * 120.16883 * 315.09447 * 16 14 12 18 18 C 1.37855 * 119.88065 * 179.74318 * 17 16 14 19 19 S 1.76197 * 119.89616 * 180.27511 * 18 17 16 20 20 N 1.65606 * 107.21887 * 270.26214 * 19 18 17 21 21 O 1.42102 * 106.39984 * 23.79601 * 19 18 17 22 22 O 1.42094 * 106.40360 * 156.71572 * 19 18 17 23 23 C 1.38458 * 120.21405 * 0.53409 * 18 17 16 24 24 C 1.38205 * 120.34111 * 359.72363 * 23 18 17 25 25 C 1.38314 * 120.11705 * 0.02562 * 24 23 18 26 26 F 1.35095 * 120.11254 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47318 * 300.00881 * 1 2 3 29 29 H 1.09001 * 109.46619 * 60.00681 * 1 2 3 30 30 H 0.96997 * 119.99693 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47580 * 275.30599 * 13 12 2 32 32 H 1.09006 * 109.46884 * 155.30234 * 13 12 2 33 33 H 1.09002 * 109.47272 * 35.31027 * 13 12 2 34 34 H 1.08000 * 120.06014 * 359.97438 * 17 16 14 35 35 H 0.96998 * 119.99824 * 359.97438 * 20 19 18 36 36 H 0.96993 * 120.00139 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.83278 * 179.69471 * 23 18 17 38 38 H 1.08004 * 119.94002 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6995 -0.2396 -2.4826 7 7 0.9430 0.8294 -2.6035 8 14 2.3216 -1.1208 -4.0077 9 1 1.3431 -2.1622 -4.4116 10 1 2.4870 -0.1420 -5.1122 11 1 3.6296 -1.7588 -3.7118 12 7 2.0183 -0.6905 1.1963 13 6 1.6643 -2.0930 1.4283 14 6 2.7931 -0.0354 2.0835 15 8 3.0120 1.1517 1.9391 16 6 3.3761 -0.7597 3.2310 17 6 2.5910 -1.6421 3.9762 18 6 3.1426 -2.3191 5.0429 19 16 2.1544 -3.4379 5.9789 20 7 1.4533 -2.5681 7.2013 21 8 1.0976 -3.8517 5.1237 22 8 3.0543 -4.3468 6.5980 23 6 4.4694 -2.1187 5.3844 24 6 5.2531 -1.2435 4.6564 25 6 4.7153 -0.5609 3.5804 26 9 5.4814 0.2949 2.8692 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 0.7091 1.1610 -3.4845 31 1 0.6912 -2.1462 1.9165 32 1 2.4167 -2.5569 2.0662 33 1 1.6217 -2.6195 0.4749 34 1 1.5545 -1.7967 3.7150 35 1 1.6313 -1.6182 7.2844 36 1 0.8652 -3.0085 7.8345 37 1 4.8939 -2.6486 6.2243 38 1 6.2874 -1.0924 4.9283 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281570618.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:57 Heat of formation + Delta-G solvation = -115.257728 kcal Electronic energy + Delta-G solvation = -26562.436754 eV Core-core repulsion = 22447.184490 eV Total energy + Delta-G solvation = -4115.252264 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.13772 -40.08706 -38.30177 -37.40401 -36.08869 -35.49006 -33.51627 -33.16182 -31.68519 -31.23972 -29.19535 -26.41582 -25.28054 -24.31933 -23.53072 -21.65294 -19.91217 -19.29966 -18.05703 -17.77924 -17.61591 -17.11363 -16.79406 -16.35442 -16.07058 -15.65932 -15.61859 -15.35066 -14.65912 -14.32807 -14.28602 -13.68719 -13.52847 -13.16381 -12.98729 -12.55876 -12.43560 -12.42342 -12.35013 -12.24260 -11.87194 -11.70125 -11.45865 -11.28485 -11.10246 -10.85903 -10.82537 -10.77237 -10.32253 -10.21059 -9.54132 -9.46149 -9.27928 -9.14162 -8.47767 -7.74080 -6.11995 -4.20470 0.01870 0.30701 0.63042 2.56903 2.90062 3.23553 3.25001 3.32065 3.34946 3.41200 3.67808 3.85259 4.11656 4.35216 4.39626 4.49190 4.79029 4.93991 5.17002 5.19796 5.33418 5.50263 5.58346 5.62824 5.64784 5.68266 5.95012 6.29780 6.33049 6.66638 6.70457 6.76820 6.98916 7.27846 7.42928 7.65189 7.94160 8.10755 8.35874 8.68062 8.87248 9.45954 10.93430 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.003707 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.202866 B = 7551.400777 C = 8269.391933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.578 5.578 13 C 0.068 3.932 14 C 0.543 3.457 15 O -0.534 6.534 16 C -0.171 4.171 17 C 0.037 3.963 18 C -0.702 4.702 19 S 2.707 3.293 20 N -1.251 6.251 21 O -0.956 6.956 22 O -0.962 6.962 23 C 0.021 3.979 24 C -0.182 4.182 25 C 0.208 3.792 26 F -0.108 7.108 27 H 0.032 0.968 28 H 0.012 0.988 29 H 0.095 0.905 30 H 0.264 0.736 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.418 0.582 36 H 0.420 0.580 37 H 0.155 0.845 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -7.112 20.323 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.308 5.308 13 C -0.075 4.075 14 C 0.328 3.672 15 O -0.412 6.412 16 C -0.176 4.176 17 C 0.018 3.982 18 C -0.789 4.789 19 S 2.795 3.205 20 N -0.926 5.926 21 O -0.945 6.945 22 O -0.952 6.952 23 C 0.002 3.998 24 C -0.202 4.202 25 C 0.187 3.813 26 F -0.086 7.086 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.178 0.822 35 H 0.245 0.755 36 H 0.251 0.749 37 H 0.173 0.827 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.068 -7.344 19.689 21.237 hybrid contribution 0.639 0.533 -0.946 1.260 sum 3.708 -6.811 18.743 20.284 Atomic orbital electron populations 1.22088 0.97754 0.99687 1.01008 1.19056 0.91217 0.94500 0.79381 0.91678 1.21287 1.32162 1.13181 0.90172 0.92130 1.24883 0.94846 0.94935 0.98982 1.69877 1.36152 1.22483 1.23890 0.86462 0.79215 0.79300 0.82239 1.20505 1.21051 1.19922 1.48244 1.47723 1.11761 1.23093 1.21994 0.99202 0.83157 1.03159 1.17857 0.80337 0.86893 0.82073 1.90792 1.60914 1.14464 1.75059 1.20508 0.93898 1.02253 1.00937 1.21234 1.00509 0.87496 0.89008 1.30535 1.09655 1.23685 1.15062 1.01455 0.73566 0.72428 0.73037 1.53054 1.66630 1.23228 1.49649 1.93637 1.54969 1.79443 1.66434 1.93604 1.65565 1.60022 1.75986 1.20881 0.90740 0.91666 0.96538 1.21232 1.02259 1.00112 0.96576 1.18002 0.87730 0.86587 0.88995 1.91632 1.74083 1.66569 1.76334 0.94886 0.96841 0.88634 0.92583 0.92581 0.92347 0.89584 0.82172 0.75515 0.74927 0.82737 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.97 37.16 0.33 -3.14 16 2 C 0.26 6.56 2.63 -69.08 -0.18 6.38 16 3 H 0.07 1.91 6.91 -51.93 -0.36 1.55 16 4 C -0.53 -14.23 8.03 -34.44 -0.28 -14.51 16 5 H 0.06 1.60 7.25 -52.49 -0.38 1.22 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.58 -12.42 2.75 -176.43 -0.49 -12.90 16 13 C 0.07 1.18 8.04 59.85 0.48 1.66 16 14 C 0.54 11.46 7.10 -12.40 -0.09 11.38 16 15 O -0.53 -13.29 15.80 5.31 0.08 -13.21 16 16 C -0.17 -2.74 5.08 -104.91 -0.53 -3.27 16 17 C 0.04 0.47 6.92 -39.19 -0.27 0.20 16 18 C -0.70 -6.95 5.94 -39.64 -0.24 -7.18 16 19 S 2.71 23.82 6.28 -107.50 -0.67 23.15 16 20 N -1.25 -6.14 9.55 60.35 0.58 -5.56 16 21 O -0.96 -11.70 17.28 -57.17 -0.99 -12.69 16 22 O -0.96 -10.71 17.27 -57.17 -0.99 -11.70 16 23 C 0.02 0.19 9.51 -39.51 -0.38 -0.19 16 24 C -0.18 -1.85 10.01 -39.57 -0.40 -2.25 16 25 C 0.21 3.03 7.25 -38.96 -0.28 2.74 16 26 F -0.11 -1.84 16.38 2.25 0.04 -1.80 16 27 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.06 0.86 7.58 -51.93 -0.39 0.46 16 32 H 0.06 0.87 5.29 -51.93 -0.27 0.59 16 33 H 0.09 1.56 6.96 -51.93 -0.36 1.20 16 34 H 0.16 1.93 5.74 -52.49 -0.30 1.63 16 35 H 0.42 1.24 8.92 -34.47 -0.31 0.93 16 36 H 0.42 1.36 8.96 -34.47 -0.31 1.05 16 37 H 0.16 0.92 7.60 -52.48 -0.40 0.52 16 38 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -36.22 335.74 -7.47 -43.70 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -3.78 Total: 0.70 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.92 Total: -6.48 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.72 Total: -42.69 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.89 Total: -37.60 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 23.82 SS G_CDS: -0.67 Total: 23.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.22 -7.47 -43.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281570618.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.561 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds