Wall clock time and date at job start Tue Mar 31 2020 05:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46981 * 348.76065 * 3 2 1 5 5 C 1.38013 * 119.99510 * 180.02562 * 4 3 2 6 6 N 1.32948 * 120.00468 * 359.97438 * 5 4 3 7 7 C 1.32923 * 120.00000 * 180.02562 * 6 5 4 8 8 N 1.38010 * 119.99875 * 179.97438 * 7 6 5 9 9 C 1.46502 * 120.00065 * 180.02562 * 8 7 6 10 10 C 1.46508 * 119.99891 * 359.97438 * 8 7 6 11 11 C 1.50697 * 109.46624 * 90.00465 * 10 8 7 12 12 H 1.07997 * 120.00792 * 359.97438 * 11 10 8 13 13 C 1.37880 * 119.99610 * 180.02562 * 11 10 8 14 14 N 1.31516 * 120.00246 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99810 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47308 * 59.99840 * 15 13 11 17 17 H 1.48504 * 109.46657 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46856 * 299.99212 * 15 13 11 19 19 N 1.32943 * 119.99991 * 359.76643 * 7 6 5 20 20 C 1.32931 * 120.00164 * 0.50931 * 19 7 6 21 21 N 1.38013 * 119.99946 * 179.74143 * 20 19 7 22 22 C 1.46504 * 120.00021 * 359.73065 * 21 20 19 23 23 C 1.46499 * 119.99598 * 179.72562 * 21 20 19 24 24 C 1.53000 * 109.46840 * 90.00479 * 23 21 20 25 25 C 1.47205 * 109.46792 * 180.02562 * 24 23 21 26 26 N 8.43864 * 107.57948 * 359.08562 * 2 1 3 27 27 N 1.32923 * 119.99697 * 180.02562 * 5 4 3 28 28 H 4.40636 * 5.51396 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.47059 * 228.76448 * 3 2 1 30 30 H 1.08994 * 109.47204 * 108.76383 * 3 2 1 31 31 H 0.96997 * 119.99994 * 0.02562 * 4 3 2 32 32 H 1.08997 * 109.47219 * 89.99801 * 9 8 7 33 33 H 1.09001 * 109.46977 * 209.99400 * 9 8 7 34 34 H 1.08994 * 109.46835 * 329.99703 * 9 8 7 35 35 H 1.09002 * 109.46729 * 210.00041 * 10 8 7 36 36 H 1.09001 * 109.47222 * 330.00328 * 10 8 7 37 37 H 0.96996 * 120.00320 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.46899 * 269.99453 * 22 21 20 39 39 H 1.08992 * 109.47334 * 29.99416 * 22 21 20 40 40 H 1.08994 * 109.46680 * 150.00040 * 22 21 20 41 41 H 1.09002 * 109.47391 * 330.00149 * 23 21 20 42 42 H 1.09001 * 109.46813 * 210.00205 * 23 21 20 43 43 H 1.09001 * 109.47194 * 299.99493 * 24 23 21 44 44 H 1.08992 * 109.47399 * 59.99666 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3539 0.2692 5 6 4.4919 -1.6005 0.3189 6 7 5.3554 -0.6090 0.1219 7 6 6.6624 -0.8466 0.1693 8 7 7.5587 0.1825 -0.0357 9 6 8.9992 -0.0795 0.0159 10 6 7.0697 1.5369 -0.3060 11 6 6.9017 2.2791 0.9947 12 1 7.1353 1.7909 1.9292 13 6 6.4487 3.5814 0.9917 14 7 6.1637 4.1759 -0.1463 15 14 6.2411 4.5017 2.6039 16 1 7.5495 4.5786 3.3021 17 1 5.7454 5.8745 2.3299 18 1 5.2639 3.7840 3.4613 19 7 7.1060 -2.0749 0.4182 20 6 6.2427 -3.0674 0.6097 21 7 6.7034 -4.3435 0.8628 22 6 8.1438 -4.6054 0.9145 23 6 5.7518 -5.4360 1.0798 24 6 5.4204 -6.0972 -0.2596 25 6 4.4638 -7.1946 -0.0416 26 7 3.7226 -8.0435 0.1284 27 7 4.9355 -2.8295 0.5626 28 1 -1.0498 -0.0004 -0.0001 29 1 3.0090 0.6782 0.7728 30 1 3.0091 0.3314 -0.9730 31 1 2.5049 -2.0774 0.4125 32 1 9.3561 -0.3449 -0.9792 33 1 9.5188 0.8141 0.3618 34 1 9.1943 -0.9024 0.7034 35 1 7.7876 2.0635 -0.9348 36 1 6.1097 1.4809 -0.8191 37 1 5.8454 5.0921 -0.1484 38 1 8.5009 -4.8705 -0.0806 39 1 8.6634 -3.7121 1.2610 40 1 8.3389 -5.4287 1.6017 41 1 4.8392 -5.0400 1.5252 42 1 6.1927 -6.1740 1.7500 43 1 4.9795 -5.3592 -0.9298 44 1 6.3329 -6.4932 -0.7050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287142032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:45 Heat of formation + Delta-G solvation = 187.180445 kcal Electronic energy + Delta-G solvation = -27532.509406 eV Core-core repulsion = 23716.525458 eV Total energy + Delta-G solvation = -3815.983949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.166 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.75455 -37.94099 -36.92515 -36.58730 -35.41196 -33.29812 -32.68181 -31.98046 -31.59186 -30.74828 -27.90874 -27.14440 -26.19331 -25.83742 -24.55181 -22.98034 -21.59706 -20.46431 -18.84501 -17.93482 -17.64583 -17.49939 -16.49772 -16.13604 -15.56246 -15.42789 -14.96091 -14.91547 -14.57087 -14.51741 -14.25083 -14.04599 -13.44008 -13.34861 -13.24223 -13.07420 -13.00294 -12.78742 -12.59668 -12.11105 -12.07258 -11.99088 -11.56534 -11.28846 -11.24138 -11.16025 -10.95566 -10.73323 -10.64891 -10.59044 -10.16369 -10.11264 -9.55643 -8.81736 -8.58418 -8.41431 -8.28143 -8.02081 -7.29224 -6.04833 -4.09624 2.08111 2.17948 2.32140 2.49539 2.58264 2.81241 2.84135 3.30364 3.34845 3.37823 3.53367 3.70986 3.90381 4.35213 4.42276 4.67153 4.72092 4.88012 4.94518 5.01274 5.15537 5.28282 5.32326 5.52646 5.56010 5.64460 5.77972 5.84414 5.88485 5.95688 6.01835 6.10591 6.19085 6.38472 6.67713 6.83087 6.94082 7.32140 7.34203 7.36728 7.46194 7.56257 7.62561 7.86680 8.03615 8.18328 8.25335 8.36336 8.92689 9.38467 9.55082 11.01785 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.003797 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.352694 B = 7371.991835 C = 9423.303169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C 0.246 3.754 4 N -0.692 5.692 5 C 0.646 3.354 6 N -0.646 5.646 7 C 0.652 3.348 8 N -0.555 5.555 9 C 0.107 3.893 10 C 0.257 3.743 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.064 3.936 14 N -0.894 5.894 15 Si 0.894 3.106 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 N -0.681 5.681 20 C 0.645 3.355 21 N -0.587 5.587 22 C 0.106 3.894 23 C 0.144 3.856 24 C -0.044 4.044 25 C 0.215 3.785 26 N -0.442 5.442 27 N -0.693 5.693 28 H 0.219 0.781 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.411 0.589 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.052 0.948 37 H 0.263 0.737 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.113 0.887 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 -15.115 -0.596 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.124 3.876 4 N -0.331 5.331 5 C 0.280 3.720 6 N -0.388 5.388 7 C 0.289 3.711 8 N -0.267 5.267 9 C -0.037 4.037 10 C 0.138 3.862 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.138 4.138 14 N -0.533 5.533 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.203 1.203 19 N -0.426 5.426 20 C 0.279 3.721 21 N -0.306 5.306 22 C -0.037 4.037 23 C 0.018 3.982 24 C -0.086 4.086 25 C -0.103 4.103 26 N -0.120 5.120 27 N -0.438 5.438 28 H 0.236 0.764 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.248 0.752 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.131 0.869 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.357 -15.868 -0.479 15.933 hybrid contribution -0.349 0.740 0.828 1.164 sum -1.707 -15.128 0.349 15.228 Atomic orbital electron populations 1.24894 0.95838 0.98160 1.01952 1.23157 0.94425 1.01814 0.99859 1.18058 0.81963 0.83689 1.03939 1.43697 1.01452 1.10559 1.77430 1.18506 0.86230 0.83552 0.83720 1.68186 1.02003 1.33767 1.34855 1.18649 0.84875 0.84571 0.83015 1.46745 1.03576 1.07474 1.68903 1.21488 0.79943 1.01723 1.00552 1.19397 0.96220 0.73930 0.96702 1.21359 1.44462 0.97277 0.92894 0.92726 1.24863 0.95298 0.97297 0.96300 1.69911 1.45142 1.13231 1.25032 0.86629 0.78508 0.78763 0.83909 1.20345 1.21230 1.20319 1.67932 1.38550 1.00180 1.35924 1.18392 0.83882 0.85628 0.84148 1.45581 1.06155 1.03168 1.75717 1.21603 0.78766 1.02325 1.01031 1.21179 0.94819 0.88094 0.94060 1.19773 0.95520 0.91639 1.01657 1.29197 0.93876 0.93944 0.93307 1.81390 1.10506 1.11549 1.08528 1.67719 1.15260 1.22946 1.37893 0.76442 0.88219 0.88660 0.75234 0.94028 0.91135 0.91313 0.94896 0.93006 0.92704 0.93189 0.89805 0.91714 0.88508 0.89980 0.86891 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 19.25 29.55 0.57 -1.58 16 2 C -0.19 -2.60 13.46 -37.12 -0.50 -3.10 16 3 C 0.25 3.79 6.16 -6.83 -0.04 3.75 16 4 N -0.69 -10.54 5.67 -65.07 -0.37 -10.91 16 5 C 0.65 11.70 8.47 -322.23 -2.73 8.97 16 6 N -0.65 -13.59 8.46 -14.79 -0.13 -13.72 16 7 C 0.65 13.58 8.19 -322.24 -2.64 10.94 16 8 N -0.55 -11.77 2.94 -185.19 -0.55 -12.31 16 9 C 0.11 1.82 10.45 59.85 0.63 2.44 16 10 C 0.26 6.32 5.18 -5.19 -0.03 6.29 16 11 C -0.52 -13.98 9.39 -34.44 -0.32 -14.30 16 12 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 N -0.68 -12.30 8.00 -14.79 -0.12 -12.42 16 20 C 0.64 10.23 8.19 -322.23 -2.64 7.59 16 21 N -0.59 -6.58 2.96 -183.81 -0.54 -7.12 16 22 C 0.11 0.92 10.50 59.85 0.63 1.55 16 23 C 0.14 1.21 5.42 -4.04 -0.02 1.19 16 24 C -0.04 -0.32 6.03 -29.52 -0.18 -0.49 16 25 C 0.21 2.04 15.45 -20.64 -0.32 1.72 16 26 N -0.44 -5.54 18.56 42.30 0.79 -4.76 16 27 N -0.69 -11.35 9.28 -14.79 -0.14 -11.48 16 28 H 0.22 1.60 7.80 -54.10 -0.42 1.18 16 29 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.41 5.39 8.57 -40.82 -0.35 5.04 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.07 1.09 7.36 -51.93 -0.38 0.71 16 35 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.05 1.39 7.36 -51.93 -0.38 1.00 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.90 7.36 -51.93 -0.38 0.51 16 40 H 0.06 0.38 7.89 -51.93 -0.41 -0.03 16 41 H 0.10 0.98 7.36 -51.93 -0.38 0.60 16 42 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 43 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -32.51 394.33 -13.13 -45.64 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.04 Total: 2.80 kcal Atomic # 6 Polarization: 34.30 SS G_CDS: -7.69 Total: 26.61 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -0.32 Total: -97.11 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.51 -13.13 -45.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287142032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.818 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds