Wall clock time and date at job start Tue Mar 31 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45203 * 109.47194 * 2 1 4 4 C 1.34576 * 117.00030 * 179.97438 * 3 2 1 5 5 O 1.21293 * 120.00123 * 0.02562 * 4 3 2 6 6 C 1.49062 * 119.99707 * 180.02562 * 4 3 2 7 7 O 1.21612 * 120.00224 * 0.02562 * 6 4 3 8 8 C 1.41525 * 119.99684 * 180.02562 * 6 4 3 9 9 C 1.38833 * 126.31460 * 0.13251 * 8 6 4 10 10 C 1.39380 * 106.91855 * 180.24639 * 9 8 6 11 11 S 1.76200 * 126.03748 * 179.81744 * 10 9 8 12 12 O 1.42096 * 106.40418 * 23.49129 * 11 10 9 13 13 O 1.42092 * 106.40321 * 156.41662 * 11 10 9 14 14 N 1.65608 * 107.21501 * 269.95669 * 11 10 9 15 15 C 1.36933 * 120.00234 * 64.99624 * 14 11 10 16 16 H 1.08002 * 119.99667 * 0.02562 * 15 14 11 17 17 C 1.38811 * 120.00228 * 179.97438 * 15 14 11 18 18 N 1.31618 * 119.99560 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00253 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46768 * 60.00289 * 19 17 15 21 21 H 1.48494 * 109.47422 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47308 * 300.00650 * 19 17 15 23 23 C 1.35885 * 107.92236 * 359.77415 * 10 9 8 24 24 N 1.34885 * 109.08766 * 0.02562 * 23 10 9 25 25 C 1.46499 * 125.65067 * 179.97438 * 24 23 10 26 26 H 1.08996 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46989 * 299.99825 * 1 2 3 28 28 H 1.08999 * 109.47080 * 59.99666 * 1 2 3 29 29 H 1.09000 * 109.47182 * 240.00920 * 2 1 3 30 30 H 1.08999 * 109.47080 * 120.00334 * 2 1 3 31 31 H 1.07999 * 126.54148 * 359.97438 * 9 8 6 32 32 H 0.97002 * 119.99663 * 245.00066 * 14 11 10 33 33 H 0.97007 * 119.99372 * 179.97438 * 18 17 15 34 34 H 1.08006 * 125.45704 * 179.97438 * 23 10 9 35 35 H 1.09002 * 109.47391 * 90.01921 * 25 24 23 36 36 H 1.09001 * 109.46813 * 330.01977 * 25 24 23 37 37 H 1.09004 * 109.47041 * 210.02104 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3482 1.5453 0.0005 5 8 4.0871 0.5834 0.0005 6 6 3.9179 2.9228 0.0011 7 8 3.1770 3.8872 0.0016 8 6 5.3209 3.1082 0.0012 9 6 6.2826 2.1069 -0.0019 10 6 7.5253 2.7380 0.0051 11 16 9.0947 1.9369 0.0094 12 8 8.8861 0.6426 -0.5386 13 8 10.0223 2.8688 -0.5294 14 7 9.5252 1.7106 1.5924 15 6 8.7876 0.8771 2.3901 16 1 7.9253 0.3670 1.9867 17 6 9.1487 0.6870 3.7169 18 7 10.1998 1.3083 4.2082 19 14 8.1429 -0.4506 4.8049 20 1 8.1519 -1.8201 4.2309 21 1 8.7318 -0.4807 6.1677 22 1 6.7451 0.0451 4.8810 23 6 7.3127 4.0801 0.0071 24 7 5.9847 4.3163 0.0022 25 6 5.3525 5.6379 0.0030 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 6.1022 1.0420 -0.0044 32 1 10.2998 2.1686 1.9546 33 1 10.4520 1.1757 5.1355 34 1 8.0836 4.8365 0.0127 35 1 5.1997 5.9682 -1.0245 36 1 5.9967 6.3484 0.5211 37 1 4.3909 5.5803 0.5130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288623266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:28 Heat of formation + Delta-G solvation = -131.299614 kcal Electronic energy + Delta-G solvation = -26286.463609 eV Core-core repulsion = 22158.142927 eV Total energy + Delta-G solvation = -4128.320682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73572 -40.52453 -38.65002 -36.94541 -36.00743 -34.66663 -34.52103 -33.05994 -31.96223 -30.85219 -30.25860 -26.76225 -26.24157 -24.42695 -23.45719 -22.02162 -21.25636 -19.80775 -18.22482 -18.00806 -17.91498 -17.49065 -16.98459 -16.69589 -16.32109 -15.68521 -15.11267 -14.86345 -14.65604 -14.49866 -14.29396 -14.16616 -13.69738 -13.63308 -13.40178 -13.09895 -12.60668 -12.46527 -12.37972 -12.19425 -11.93575 -11.89931 -11.46237 -11.23491 -11.03875 -11.00071 -10.82835 -10.78084 -10.52611 -10.42777 -10.08190 -9.95126 -9.92034 -8.98981 -8.40059 -8.19609 -6.37506 -3.82855 0.32922 1.62377 1.86100 1.91856 2.41102 2.88272 3.18317 3.24569 3.26966 3.31496 4.10081 4.16507 4.57352 4.65808 4.67872 4.70025 4.76222 4.87250 4.89548 5.01975 5.03874 5.19880 5.27532 5.34527 5.38901 5.50480 5.60737 5.65094 5.79879 6.05511 6.26017 6.53313 6.79714 6.95786 7.08216 7.13015 7.46231 7.58247 8.75584 8.89642 9.32166 10.79097 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.010255 B = 0.004736 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.644662 B = 5910.919189 C = 7383.758471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.337 6.337 4 C 0.441 3.559 5 O -0.458 6.458 6 C 0.446 3.554 7 O -0.435 6.435 8 C -0.129 4.129 9 C 0.026 3.974 10 C -0.746 4.746 11 S 2.655 3.345 12 O -0.969 6.969 13 O -1.005 7.005 14 N -0.954 5.954 15 C -0.279 4.279 16 H 0.103 0.897 17 C 0.031 3.969 18 N -0.887 5.887 19 Si 0.918 3.082 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.161 3.839 24 N -0.406 5.406 25 C 0.059 3.941 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.178 0.822 32 H 0.410 0.590 33 H 0.272 0.728 34 H 0.189 0.811 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.731 4.600 -5.873 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.253 6.253 4 C 0.279 3.721 5 O -0.343 6.343 6 C 0.326 3.674 7 O -0.312 6.312 8 C -0.235 4.235 9 C 0.000 4.000 10 C -0.832 4.832 11 S 2.743 3.257 12 O -0.959 6.959 13 O -0.995 6.995 14 N -0.707 5.707 15 C -0.417 4.417 16 H 0.121 0.879 17 C -0.175 4.175 18 N -0.529 5.529 19 Si 0.745 3.255 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.200 1.200 23 C 0.016 3.984 24 N -0.078 5.078 25 C -0.082 4.082 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.196 0.804 32 H 0.246 0.754 33 H 0.082 0.918 34 H 0.206 0.794 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.855 4.861 -6.646 16.984 hybrid contribution -0.784 -0.074 1.224 1.456 sum -15.639 4.787 -5.421 17.230 Atomic orbital electron populations 1.21807 0.92305 1.03100 1.03671 1.23219 0.95637 0.79592 1.03333 1.86633 1.22721 1.32938 1.83039 1.23793 0.81655 0.91940 0.74669 1.90828 1.59960 1.42265 1.41294 1.18794 0.87156 0.86510 0.74972 1.90630 1.62187 1.41489 1.36924 1.18904 0.92243 0.86425 1.25918 1.21998 0.89117 0.99608 0.89316 1.32436 1.23754 1.03289 1.23749 1.04523 0.72997 0.73648 0.74569 1.93484 1.86308 1.38185 1.77967 1.93413 1.62182 1.64594 1.79281 1.51556 1.34966 1.53152 1.31006 1.19216 1.11239 1.18300 0.92922 0.87940 1.25150 0.96906 0.98487 0.96949 1.69682 1.24897 1.42486 1.15850 0.86118 0.79582 0.80756 0.79036 1.19544 1.20878 1.19979 1.22031 0.84231 0.96765 0.95385 1.44049 1.06055 1.05966 1.51704 1.22412 1.00666 0.80873 1.04240 0.89961 0.91344 0.91409 0.90597 0.90499 0.80444 0.75421 0.91807 0.79384 0.90101 0.89118 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.34 -4.46 10.08 -45.23 -0.46 -4.91 16 4 C 0.44 6.64 7.99 35.22 0.28 6.92 16 5 O -0.46 -7.65 13.82 -19.10 -0.26 -7.91 16 6 C 0.45 6.91 7.00 -33.84 -0.24 6.68 16 7 O -0.43 -6.73 15.13 -8.10 -0.12 -6.85 16 8 C -0.13 -2.15 6.72 -83.69 -0.56 -2.71 16 9 C 0.03 0.48 9.73 -38.94 -0.38 0.10 16 10 C -0.75 -14.11 6.09 -40.00 -0.24 -14.36 16 11 S 2.65 57.47 5.84 -107.50 -0.63 56.85 16 12 O -0.97 -23.59 17.57 -57.17 -1.00 -24.59 16 13 O -1.01 -22.48 17.85 -57.17 -1.02 -23.50 16 14 N -0.95 -22.64 5.75 31.50 0.18 -22.46 16 15 C -0.28 -7.08 9.63 -15.06 -0.15 -7.23 16 16 H 0.10 2.52 7.82 -52.49 -0.41 2.11 16 17 C 0.03 0.80 5.50 -17.43 -0.10 0.71 16 18 N -0.89 -23.62 13.06 55.49 0.72 -22.90 16 19 Si 0.92 20.12 29.55 -169.99 -5.02 15.09 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 C 0.16 2.52 11.10 -17.05 -0.19 2.33 16 24 N -0.41 -5.95 3.15 -121.67 -0.38 -6.33 16 25 C 0.06 0.60 10.54 59.85 0.63 1.23 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.18 3.39 6.08 -52.49 -0.32 3.07 16 32 H 0.41 9.83 8.02 -34.47 -0.28 9.55 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.19 2.34 8.06 -52.48 -0.42 1.92 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.10 6.25 -51.93 -0.32 0.78 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -33.07 345.42 -6.97 -40.03 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.85 Total: 8.52 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -0.33 Total: -6.23 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.52 Total: -51.69 kcal Atomic # 8 Polarization: -64.90 SS G_CDS: -2.87 Total: -67.77 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 57.47 SS G_CDS: -0.63 Total: 56.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.07 -6.97 -40.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288623266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.267 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds