Wall clock time and date at job start Tue Mar 31 2020 06:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47144 * 2 1 4 4 C 1.50692 * 109.47295 * 120.00257 * 2 1 3 5 5 H 1.08008 * 120.00350 * 120.00078 * 4 2 1 6 6 C 1.37878 * 120.00036 * 300.00146 * 4 2 1 7 7 N 1.31516 * 119.99999 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00172 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46987 * 59.99990 * 8 6 4 10 10 H 1.48502 * 109.47117 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47242 * 300.00097 * 8 6 4 12 12 N 1.46506 * 109.47239 * 240.00309 * 2 1 3 13 13 C 1.34773 * 119.99806 * 84.99884 * 12 2 1 14 14 O 1.21287 * 120.00424 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99758 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.46981 * 179.97438 * 15 13 12 17 17 S 1.65606 * 120.00055 * 165.00101 * 16 15 13 18 18 O 1.42105 * 106.40008 * 311.45637 * 17 16 15 19 19 O 1.42098 * 106.40370 * 178.53822 * 17 16 15 20 20 C 1.76193 * 107.21910 * 64.99793 * 17 16 15 21 21 C 1.38218 * 120.01443 * 115.00173 * 20 17 16 22 22 C 1.38225 * 120.02745 * 179.97438 * 21 20 17 23 23 C 1.38271 * 120.04796 * 0.02562 * 22 21 20 24 24 C 1.38173 * 120.02988 * 359.97438 * 23 22 21 25 25 C 1.38441 * 120.01156 * 294.72332 * 20 17 16 26 26 F 1.35102 * 120.02705 * 0.02562 * 25 20 17 27 27 H 1.08995 * 109.46894 * 299.99377 * 1 2 3 28 28 H 1.08995 * 109.47095 * 59.99979 * 1 2 3 29 29 H 1.09002 * 109.46412 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00324 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00133 * 264.99737 * 12 2 1 32 32 H 1.08996 * 109.47096 * 60.00263 * 15 13 12 33 33 H 1.09002 * 109.47120 * 299.99543 * 15 13 12 34 34 H 0.97002 * 120.00335 * 345.00141 * 16 15 13 35 35 H 1.07995 * 119.98890 * 359.97438 * 21 20 17 36 36 H 1.07995 * 119.97598 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.98191 * 179.97438 * 23 22 21 38 38 H 1.07994 * 120.01616 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1210 4.0080 10 1 1.8270 -0.4201 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8591 1.1588 -2.4115 15 6 2.6489 -0.7286 -3.5878 16 7 2.6977 0.2127 -4.7093 17 16 3.5469 -0.1730 -6.0777 18 8 4.8219 -0.6268 -5.6442 19 8 3.3732 0.9131 -6.9773 20 6 2.7485 -1.5608 -6.8132 21 6 2.1491 -1.4370 -8.0525 22 6 1.5231 -2.5256 -8.6300 23 6 1.4953 -3.7396 -7.9686 24 6 2.0938 -3.8658 -6.7296 25 6 2.7262 -2.7773 -6.1527 26 9 3.3162 -2.9009 -4.9436 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 0.7089 1.1613 3.4844 31 1 2.2492 -1.6317 -1.1527 32 1 1.9760 -1.5504 -3.8327 33 1 3.6481 -1.1211 -3.3987 34 1 2.2326 1.0619 -4.6504 35 1 2.1698 -0.4892 -8.5699 36 1 1.0546 -2.4278 -9.5982 37 1 1.0055 -4.5894 -8.4206 38 1 2.0715 -4.8139 -6.2130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290224385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:33 Heat of formation + Delta-G solvation = -124.474254 kcal Electronic energy + Delta-G solvation = -26017.926600 eV Core-core repulsion = 21902.274677 eV Total energy + Delta-G solvation = -4115.651923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -49.62404 -39.38054 -39.11788 -37.36495 -36.02891 -35.27354 -34.32635 -32.45351 -31.92817 -31.03305 -29.37797 -26.56425 -25.27285 -24.04577 -23.31500 -21.34057 -19.85179 -19.59354 -18.85313 -18.12547 -17.45215 -16.95209 -16.91573 -16.45780 -15.91362 -15.52106 -15.48171 -15.22066 -14.91186 -14.67344 -14.63699 -13.95191 -13.66894 -13.19807 -12.99454 -12.87843 -12.73936 -12.39939 -12.26683 -12.17359 -12.16320 -12.12067 -11.69810 -11.17076 -11.11876 -10.97793 -10.79458 -10.37646 -10.26456 -10.04480 -9.75625 -9.36979 -9.18762 -9.09425 -8.58794 -8.01873 -6.15082 -4.24756 0.03159 0.29216 0.62033 2.66130 2.94819 3.19911 3.24881 3.30156 3.31496 3.45120 3.56272 3.89298 4.03824 4.28394 4.34640 4.43552 4.64053 4.78402 4.99160 5.06331 5.17297 5.28062 5.30360 5.39121 5.44943 5.53357 5.69166 5.73791 6.23029 6.76823 6.88561 6.93923 7.09101 7.36256 7.48956 7.64874 7.86011 8.10327 8.55284 8.71619 8.98847 9.42569 10.90889 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.002957 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.433575 B = 9466.188893 C = 9942.613852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.703 5.703 13 C 0.501 3.499 14 O -0.547 6.547 15 C 0.093 3.907 16 N -1.097 6.097 17 S 2.702 3.298 18 O -0.944 6.944 19 O -0.952 6.952 20 C -0.715 4.715 21 C 0.006 3.994 22 C -0.151 4.151 23 C -0.039 4.039 24 C -0.171 4.171 25 C 0.193 3.807 26 F -0.118 7.118 27 H 0.091 0.909 28 H 0.015 0.985 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.392 0.608 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.430 0.570 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -10.451 -22.049 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.351 5.351 13 C 0.284 3.716 14 O -0.426 6.426 15 C -0.038 4.038 16 N -0.862 5.862 17 S 2.788 3.212 18 O -0.934 6.934 19 O -0.942 6.942 20 C -0.800 4.800 21 C -0.013 4.013 22 C -0.170 4.170 23 C -0.057 4.057 24 C -0.191 4.191 25 C 0.172 3.828 26 F -0.096 7.096 27 H 0.110 0.890 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.224 0.776 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.270 0.730 35 H 0.172 0.828 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.610 -9.244 -22.166 24.024 hybrid contribution -0.307 -1.315 1.085 1.732 sum 0.303 -10.560 -21.081 23.580 Atomic orbital electron populations 1.22084 0.98338 0.99171 1.00987 1.18800 0.91087 0.94090 0.79778 0.93164 1.21179 1.32660 1.13365 0.90261 0.91966 1.24889 0.94757 0.94937 0.99094 1.69887 1.35746 1.22378 1.24077 0.86484 0.79231 0.79539 0.81694 1.20108 1.21140 1.20144 1.46495 1.64584 1.13743 1.10297 1.20161 0.79080 0.87678 0.84729 1.90651 1.51446 1.15819 1.84685 1.21356 1.03845 0.91728 0.86833 1.55147 1.72413 1.29556 1.29100 1.01786 0.73695 0.73248 0.72430 1.93635 1.36476 1.82270 1.81016 1.93593 1.86299 1.51025 1.63284 1.31156 1.22562 1.16985 1.09303 1.20937 0.89389 1.00062 0.90909 1.21402 1.01280 0.92935 1.01356 1.21382 0.93583 0.97922 0.92786 1.21311 1.01307 0.98790 0.97647 1.17111 0.91680 0.93443 0.80560 1.91631 1.80867 1.96370 1.40769 0.89043 0.96640 0.95405 0.92464 0.77568 0.89455 0.87254 0.73014 0.82817 0.84179 0.84077 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.57 2.56 -69.08 -0.18 6.39 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.61 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.70 -14.04 5.07 -54.93 -0.28 -14.32 16 13 C 0.50 9.52 7.86 -10.99 -0.09 9.43 16 14 O -0.55 -12.37 15.39 5.55 0.09 -12.28 16 15 C 0.09 1.30 5.05 -5.19 -0.03 1.28 16 16 N -1.10 -14.86 5.93 -11.66 -0.07 -14.93 16 17 S 2.70 34.64 5.48 -107.50 -0.59 34.05 16 18 O -0.94 -14.71 16.89 -57.17 -0.97 -15.68 16 19 O -0.95 -13.50 16.97 -57.17 -0.97 -14.47 16 20 C -0.71 -7.53 5.89 -39.51 -0.23 -7.76 16 21 C 0.01 0.05 9.55 -39.59 -0.38 -0.33 16 22 C -0.15 -0.94 10.05 -39.57 -0.40 -1.34 16 23 C -0.04 -0.22 10.04 -39.59 -0.40 -0.62 16 24 C -0.17 -1.29 10.03 -39.51 -0.40 -1.69 16 25 C 0.19 1.97 6.80 -39.41 -0.27 1.70 16 26 F -0.12 -1.32 12.96 2.25 0.03 -1.29 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 6.60 8.54 -40.82 -0.35 6.26 16 32 H 0.09 0.99 6.77 -51.93 -0.35 0.64 16 33 H 0.11 1.44 7.25 -51.93 -0.38 1.06 16 34 H 0.43 5.97 7.70 -34.47 -0.27 5.71 16 35 H 0.15 1.11 7.33 -52.49 -0.38 0.72 16 36 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 37 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 38 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -34.29 339.74 -8.53 -42.82 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.09 Total: 8.31 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -2.41 Total: -8.75 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.28 Total: -53.23 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.85 Total: -42.43 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.03 Total: -1.29 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 34.64 SS G_CDS: -0.59 Total: 34.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.29 -8.53 -42.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290224385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.656 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds