Wall clock time and date at job start Tue Mar 31 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00173 * 2 1 4 4 H 1.48503 * 109.46848 * 240.00245 * 3 2 1 5 5 H 1.48506 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47217 * 120.00000 * 3 2 1 7 7 C 1.37879 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00015 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47182 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47496 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00297 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99829 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99947 * 180.02562 * 12 11 10 15 15 N 1.46506 * 109.46793 * 180.02562 * 14 12 11 16 16 S 1.65597 * 119.99791 * 165.00139 * 15 14 12 17 17 O 1.42102 * 106.40060 * 178.54054 * 16 15 14 18 18 O 1.42101 * 106.40207 * 311.45359 * 16 15 14 19 19 C 1.76196 * 107.22133 * 64.99502 * 16 15 14 20 20 C 1.38222 * 120.01329 * 114.99828 * 19 16 15 21 21 C 1.38220 * 120.02965 * 179.97438 * 20 19 16 22 22 C 1.38274 * 120.04687 * 0.02579 * 21 20 19 23 23 C 1.38169 * 120.02531 * 359.97438 * 22 21 20 24 24 C 1.38440 * 120.01335 * 294.72626 * 19 16 15 25 25 F 1.35094 * 120.02485 * 359.97438 * 24 19 16 26 26 H 0.97007 * 119.99312 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46909 * 60.00138 * 9 7 2 28 28 H 1.09002 * 109.47733 * 300.00511 * 9 7 2 29 29 H 1.09002 * 109.47313 * 60.00108 * 10 9 7 30 30 H 1.09008 * 109.46851 * 300.00299 * 10 9 7 31 31 H 0.97006 * 119.99716 * 0.02562 * 11 10 9 32 32 H 1.08998 * 109.47498 * 60.00039 * 14 12 11 33 33 H 1.09002 * 109.46794 * 299.99536 * 14 12 11 34 34 H 0.96995 * 120.00050 * 344.72224 * 15 14 12 35 35 H 1.08004 * 119.98767 * 0.02562 * 20 19 16 36 36 H 1.07993 * 119.97788 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.98250 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.01162 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0007 13 8 3.3993 -6.0981 -0.0003 14 6 1.4329 -7.4031 -0.0020 15 7 2.3849 -8.5167 -0.0006 16 16 1.8695 -10.0462 0.3697 17 8 3.0052 -10.8920 0.2514 18 8 1.1047 -9.9342 1.5621 19 6 0.7476 -10.5394 -0.8964 20 6 1.0672 -11.5938 -1.7310 21 6 0.1872 -11.9813 -2.7239 22 6 -1.0135 -11.3144 -2.8838 23 6 -1.3351 -10.2601 -2.0507 24 6 -0.4567 -9.8746 -1.0519 25 9 -0.7727 -8.8478 -0.2329 26 1 -0.4849 0.8402 0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8718 -3.6044 0.8895 30 1 2.8719 -3.6043 -0.8906 31 1 0.5426 -4.9308 -0.0019 32 1 0.8072 -7.4606 -0.8926 33 1 0.8053 -7.4610 0.8874 34 1 3.3163 -8.3587 -0.2205 35 1 2.0046 -12.1157 -1.6067 36 1 0.4379 -12.8050 -3.3758 37 1 -1.7002 -11.6178 -3.6603 38 1 -2.2728 -9.7391 -2.1761 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290838753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:08 Heat of formation + Delta-G solvation = -130.960033 kcal Electronic energy + Delta-G solvation = -25404.540657 eV Core-core repulsion = 21288.607490 eV Total energy + Delta-G solvation = -4115.933168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.72213 -39.49611 -39.45838 -37.49504 -36.15686 -35.35622 -34.58645 -32.91126 -32.00888 -31.11283 -30.00421 -27.23708 -24.46999 -24.12648 -23.39642 -21.13871 -20.45753 -19.94086 -18.98223 -18.15550 -17.50174 -17.05680 -16.81924 -16.53683 -16.35271 -15.83917 -15.64657 -15.35305 -15.20165 -14.71697 -14.54451 -14.22517 -13.98233 -13.81603 -13.29145 -13.04134 -12.93462 -12.65569 -12.40553 -12.36689 -12.30043 -12.23590 -12.20190 -11.26761 -11.25887 -11.05109 -10.69464 -10.38393 -10.13741 -10.03029 -9.86309 -9.54583 -9.43763 -9.27470 -8.64167 -8.41654 -6.12352 -4.15490 -0.08351 0.18708 0.54473 2.52366 2.77882 2.84829 3.29419 3.33010 3.33421 3.35849 3.46224 3.52469 3.89303 4.20313 4.34292 4.38859 4.56647 4.67395 4.71269 4.98320 5.03992 5.13247 5.21308 5.24783 5.35741 5.40614 5.46252 5.66993 6.15387 6.25502 6.27933 6.65659 6.71638 6.80233 7.46344 7.56760 7.83486 7.86904 8.22376 8.45544 8.90088 9.49540 10.99137 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.002452 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.325791 B =11418.290250 C =12152.247017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.716 5.716 12 C 0.506 3.494 13 O -0.543 6.543 14 C 0.093 3.907 15 N -1.099 6.099 16 S 2.703 3.297 17 O -0.950 6.950 18 O -0.943 6.943 19 C -0.716 4.716 20 C 0.006 3.994 21 C -0.150 4.150 22 C -0.037 4.037 23 C -0.170 4.170 24 C 0.192 3.808 25 F -0.119 7.119 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.401 0.599 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.431 0.569 35 H 0.154 0.846 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 -25.992 -6.564 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.366 5.366 12 C 0.289 3.711 13 O -0.421 6.421 14 C -0.037 4.037 15 N -0.864 5.864 16 S 2.789 3.211 17 O -0.940 6.940 18 O -0.933 6.933 19 C -0.801 4.801 20 C -0.013 4.013 21 C -0.169 4.169 22 C -0.056 4.056 23 C -0.190 4.190 24 C 0.171 3.829 25 F -0.097 7.097 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.235 0.765 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.270 0.730 35 H 0.172 0.828 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.522 -26.310 -5.778 27.167 hybrid contribution -0.317 1.334 -0.707 1.543 sum -3.839 -24.976 -6.484 26.088 Atomic orbital electron populations 1.69947 1.06091 1.27041 1.50178 1.24995 0.94903 0.99427 0.94923 0.86561 0.79511 0.82601 0.78792 1.20122 1.21232 1.20080 1.21002 0.93214 0.90367 1.51639 0.92284 1.19329 0.94186 0.91029 0.97963 1.21794 0.96126 0.81175 1.01024 1.46280 1.10789 1.06388 1.73186 1.20255 0.88315 0.85369 0.77178 1.90670 1.13710 1.87233 1.50448 1.21331 0.91675 0.86059 1.04623 1.55194 1.20068 1.22695 1.88415 1.01787 0.73431 0.72092 0.73782 1.93601 1.48925 1.64753 1.86740 1.93640 1.72320 1.85601 1.41711 1.31114 1.13263 1.10929 1.24813 1.20939 0.99111 0.91137 0.90128 1.21414 0.94630 1.01528 0.99318 1.21405 0.95919 0.92074 0.96162 1.21328 1.00956 1.00269 0.96401 1.17102 0.92585 0.84523 0.88680 1.91622 1.92659 1.55257 1.70174 0.92747 0.95875 0.95796 0.92277 0.92351 0.76513 0.88980 0.86851 0.73031 0.82802 0.84125 0.83994 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.47 5.61 -4.04 -0.02 2.44 16 11 N -0.72 -11.66 5.56 -60.29 -0.33 -12.00 16 12 C 0.51 7.95 7.90 -10.99 -0.09 7.86 16 13 O -0.54 -10.33 15.73 5.56 0.09 -10.24 16 14 C 0.09 1.09 5.05 -5.19 -0.03 1.07 16 15 N -1.10 -12.65 5.93 -11.65 -0.07 -12.72 16 16 S 2.70 30.70 5.48 -107.50 -0.59 30.11 16 17 O -0.95 -12.21 16.97 -57.17 -0.97 -13.18 16 18 O -0.94 -13.36 16.88 -57.17 -0.97 -14.32 16 19 C -0.72 -6.71 5.89 -39.51 -0.23 -6.94 16 20 C 0.01 0.04 9.55 -39.59 -0.38 -0.33 16 21 C -0.15 -0.82 10.05 -39.57 -0.40 -1.21 16 22 C -0.04 -0.19 10.04 -39.59 -0.40 -0.59 16 23 C -0.17 -1.14 10.03 -39.52 -0.40 -1.54 16 24 C 0.19 1.75 6.80 -39.42 -0.27 1.48 16 25 F -0.12 -1.18 12.97 2.25 0.03 -1.15 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 31 H 0.40 5.49 8.47 -40.82 -0.35 5.14 16 32 H 0.09 0.85 6.77 -51.93 -0.35 0.49 16 33 H 0.11 1.22 7.25 -51.93 -0.38 0.85 16 34 H 0.43 5.02 7.71 -34.47 -0.27 4.75 16 35 H 0.15 0.96 7.33 -52.48 -0.38 0.57 16 36 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 37 H 0.14 0.29 8.06 -52.48 -0.42 -0.13 16 38 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -35.35 344.56 -8.89 -44.24 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.23 Total: 3.61 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.76 Total: -10.64 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.33 Total: -49.73 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.85 Total: -37.74 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.03 Total: -1.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 30.70 SS G_CDS: -0.59 Total: 30.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.35 -8.89 -44.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290838753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.723 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds