Wall clock time and date at job start Tue Mar 31 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50710 * 119.99919 * 2 1 4 4 N 1.46499 * 109.46511 * 125.41539 * 3 2 1 5 5 C 1.46504 * 119.99695 * 276.37869 * 4 3 2 6 6 C 1.50697 * 109.47220 * 270.00332 * 5 4 3 7 7 H 1.08002 * 120.00054 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00208 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99965 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00423 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47448 * 89.99510 * 10 8 6 12 12 H 1.48501 * 109.47315 * 209.99870 * 10 8 6 13 13 H 1.48495 * 109.46904 * 329.99488 * 10 8 6 14 14 C 1.34768 * 120.00413 * 96.38543 * 4 3 2 15 15 O 1.21636 * 120.00489 * 184.90432 * 14 4 3 16 16 C 1.47192 * 119.99784 * 4.90541 * 14 4 3 17 17 C 1.36010 * 123.46296 * 322.04317 * 16 14 4 18 18 S 1.70448 * 110.81911 * 179.74812 * 17 16 14 19 19 C 1.75513 * 92.44287 * 0.35389 * 18 17 16 20 20 S 1.76201 * 124.70841 * 179.90757 * 19 18 17 21 21 N 1.65600 * 107.21619 * 269.69618 * 20 19 18 22 22 O 1.42099 * 106.40420 * 23.23451 * 20 19 18 23 23 O 1.42098 * 106.40090 * 156.15890 * 20 19 18 24 24 C 1.32765 * 110.57417 * 359.64446 * 19 18 17 25 25 H 1.08008 * 120.00030 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00455 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00530 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47131 * 5.41529 * 3 2 1 29 29 H 1.08999 * 109.47248 * 245.40857 * 3 2 1 30 30 H 1.08997 * 109.47545 * 30.00648 * 5 4 3 31 31 H 1.09010 * 109.46848 * 150.00652 * 5 4 3 32 32 H 0.96996 * 120.00243 * 180.02562 * 9 8 6 33 33 H 1.08001 * 124.58827 * 0.02562 * 17 16 14 34 34 H 0.96999 * 120.00532 * 270.00405 * 21 20 19 35 35 H 0.97003 * 119.99823 * 90.00621 * 21 20 19 36 36 H 1.08000 * 123.45662 * 180.27164 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0008 1.3278 1.1257 5 6 2.5365 1.7241 2.4575 6 6 2.6954 3.2136 2.6221 7 1 3.1011 3.8059 1.8153 8 6 2.3227 3.8204 3.8028 9 7 1.8282 3.0992 4.7852 10 14 2.5189 5.6668 4.0067 11 1 1.2802 6.3493 3.5540 12 1 2.7643 5.9837 5.4366 13 1 3.6683 6.1354 3.1916 14 6 4.2900 0.9841 0.9362 15 8 5.0474 0.9164 1.8856 16 6 4.7817 0.6906 -0.4198 17 6 4.0498 0.0292 -1.3562 18 16 4.9257 -0.1280 -2.8098 19 6 6.3205 0.7064 -2.1473 20 16 7.8146 1.0183 -3.0277 21 7 8.8190 -0.2710 -2.7607 22 8 7.4807 0.9876 -4.4085 23 8 8.4238 2.1382 -2.4001 24 6 6.0912 1.0749 -0.8926 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3591 2.1314 0.0970 29 1 2.6155 1.4061 -0.9344 30 1 1.4862 1.4560 2.5709 31 1 3.1268 1.2098 3.2160 32 1 1.5656 3.5261 5.6157 33 1 3.0474 -0.3418 -1.2011 34 1 9.4302 -0.2620 -2.0075 35 1 8.7962 -1.0353 -3.3576 36 1 6.8100 1.6076 -0.2877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293674538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:15 Heat of formation + Delta-G solvation = -75.212221 kcal Electronic energy + Delta-G solvation = -23475.796934 eV Core-core repulsion = 19792.661255 eV Total energy + Delta-G solvation = -3683.135679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23568 -38.47477 -37.98956 -37.44745 -37.06736 -35.17650 -34.14398 -33.78763 -31.73780 -29.42841 -27.41017 -26.14411 -24.90211 -22.57955 -21.42099 -20.58749 -19.98003 -19.33589 -18.66141 -18.33902 -18.24414 -18.04268 -17.35606 -16.81379 -16.42436 -16.10133 -15.93899 -15.46285 -15.06039 -14.69824 -14.45026 -14.17714 -14.00955 -13.66899 -13.37421 -13.36156 -13.31509 -13.24763 -13.05551 -12.90736 -12.72502 -12.59376 -12.35493 -12.30536 -12.25848 -11.73400 -11.45576 -10.90674 -10.67444 -10.64406 -10.31698 -9.69751 -9.46137 -8.26454 -6.41326 -0.79986 -0.60810 0.24389 0.55066 0.63851 1.22675 1.34695 1.37583 1.48031 1.90188 2.21311 2.34464 2.44886 2.67878 3.03712 3.37833 3.62589 3.71813 3.97473 4.08171 4.13436 4.27123 4.36474 4.58422 4.76458 4.82649 4.98638 5.00650 5.17774 5.21079 5.43513 5.61406 5.69660 5.85827 6.00661 6.35247 6.57057 6.67631 7.17531 7.33369 8.80972 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.003726 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.327338 B = 7512.733017 C = 8767.549684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.201 4.201 3 C 0.118 3.882 4 N -0.587 5.587 5 C 0.265 3.735 6 C -0.548 4.548 7 H 0.051 0.949 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.275 1.275 14 C 0.558 3.442 15 O -0.590 6.590 16 C -0.193 4.193 17 C -0.186 4.186 18 S 0.368 5.632 19 C -0.825 4.825 20 S 2.755 3.245 21 N -1.218 6.218 22 O -0.969 6.969 23 O -0.983 6.983 24 C 0.039 3.961 25 H 0.101 0.899 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.028 0.972 31 H 0.001 0.999 32 H 0.268 0.732 33 H 0.207 0.793 34 H 0.433 0.567 35 H 0.435 0.565 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -11.659 -20.723 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.220 4.220 3 C -0.004 4.004 4 N -0.316 5.316 5 C 0.144 3.856 6 C -0.587 4.587 7 H 0.070 0.930 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.200 1.200 14 C 0.346 3.654 15 O -0.472 6.472 16 C -0.211 4.211 17 C -0.325 4.325 18 S 0.637 5.363 19 C -1.023 5.023 20 S 2.835 3.165 21 N -0.897 5.897 22 O -0.958 6.958 23 O -0.973 6.973 24 C 0.005 3.995 25 H 0.119 0.881 26 H 0.142 0.858 27 H 0.138 0.862 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.046 0.954 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.224 0.776 34 H 0.264 0.736 35 H 0.267 0.733 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.403 -11.460 -21.994 25.382 hybrid contribution -0.051 0.966 3.083 3.231 sum 5.352 -10.494 -18.911 22.279 Atomic orbital electron populations 1.24137 0.95257 1.03343 0.95960 1.23255 0.97006 0.97771 1.03996 1.21174 0.92580 0.97038 0.89562 1.48082 1.08288 1.63762 1.11436 1.18760 0.93921 0.94103 0.78778 1.21681 1.42856 0.93564 1.00584 0.93033 1.25804 0.94368 1.03473 0.95024 1.70042 1.43185 1.37707 1.05481 0.85441 0.78882 0.79167 0.77500 1.18681 1.20411 1.20013 1.18196 0.82124 0.76948 0.88148 1.90734 1.56748 1.55215 1.44472 1.20337 0.96643 1.08969 0.95194 1.27005 1.06238 1.00348 0.98946 1.82496 0.99133 1.47768 1.06950 1.36000 1.28634 1.25098 1.12580 1.00066 0.71707 0.72709 0.72065 1.52912 1.54215 1.38816 1.43750 1.93594 1.84744 1.86777 1.30732 1.93598 1.75208 1.50155 1.78310 1.20869 0.94195 0.91818 0.92653 0.88103 0.85826 0.86169 0.90263 0.87620 0.95404 0.98073 0.92268 0.77621 0.73564 0.73283 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 14.32 67.79 0.97 -2.26 16 2 C -0.20 -5.05 8.32 25.66 0.21 -4.83 16 3 C 0.12 3.75 5.35 85.64 0.46 4.21 16 4 N -0.59 -25.61 2.44 -834.63 -2.04 -27.65 16 5 C 0.27 14.45 5.21 85.63 0.45 14.90 16 6 C -0.55 -31.99 9.39 25.60 0.24 -31.75 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.74 5.46 84.65 0.46 1.21 16 9 N -0.92 -55.86 13.29 21.45 0.28 -55.57 16 10 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 C 0.56 24.70 7.48 86.60 0.65 25.34 16 15 O -0.59 -31.88 16.58 -4.15 -0.07 -31.94 16 16 C -0.19 -6.25 5.36 -19.87 -0.11 -6.36 16 17 C -0.19 -4.23 8.36 67.30 0.56 -3.67 16 18 S 0.37 6.22 22.86 -56.49 -1.29 4.93 16 19 C -0.82 -18.01 6.51 66.64 0.43 -17.58 16 20 S 2.75 51.88 6.42 -56.49 -0.36 51.52 16 21 N -1.22 -11.28 9.52 37.02 0.35 -10.93 16 22 O -0.97 -21.26 17.88 -128.00 -2.29 -23.55 16 23 O -0.98 -26.50 17.77 -128.00 -2.28 -28.77 16 24 C 0.04 1.13 9.92 22.67 0.22 1.35 16 25 H 0.10 2.21 7.84 -2.91 -0.02 2.19 16 26 H 0.12 2.05 8.06 -2.91 -0.02 2.03 16 27 H 0.12 2.68 7.06 -2.91 -0.02 2.66 16 28 H 0.08 2.64 7.77 -2.39 -0.02 2.62 16 29 H 0.11 2.79 4.89 -2.39 -0.01 2.78 16 30 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 31 H 0.00 0.07 7.36 -2.38 -0.02 0.05 16 32 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.21 3.92 3.93 -2.91 -0.01 3.91 16 34 H 0.43 2.86 8.96 -96.74 -0.87 2.00 16 35 H 0.43 1.68 8.96 -96.74 -0.87 0.81 16 36 H 0.15 4.69 8.05 -2.91 -0.02 4.67 16 Total: -1.00 -84.82 340.37 -1.68 -86.50 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -0.58 Total: 7.58 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.55 Total: -19.44 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -1.40 Total: -94.15 kcal Atomic # 8 Polarization: -79.64 SS G_CDS: -4.63 Total: -84.27 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 58.10 SS G_CDS: -1.65 Total: 56.45 kcal Total: -84.82 -1.68 -86.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293674538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.290 kcal (2) G-P(sol) polarization free energy of solvation -84.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds