Wall clock time and date at job start Tue Mar 31 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86793 * 120.00239 * 2 1 4 4 H 1.48506 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47275 * 299.99931 * 3 2 1 6 6 H 1.48496 * 109.47329 * 60.00199 * 3 2 1 7 7 C 1.38950 * 119.99305 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99715 * 197.99180 * 7 2 1 9 9 N 1.37094 * 120.00685 * 17.99411 * 7 2 1 10 10 C 1.34776 * 119.99987 * 44.48299 * 9 7 2 11 11 O 1.21292 * 120.00043 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00139 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47120 * 180.02562 * 12 10 9 14 14 S 1.65605 * 119.99978 * 165.00206 * 13 12 10 15 15 O 1.42096 * 106.40336 * 311.46196 * 14 13 12 16 16 O 1.42097 * 106.40159 * 178.53930 * 14 13 12 17 17 C 1.76206 * 107.21556 * 65.00193 * 14 13 12 18 18 C 1.33381 * 125.20581 * 90.00288 * 17 14 13 19 19 C 1.38417 * 114.92375 * 179.97438 * 18 17 14 20 20 C 1.33393 * 114.92133 * 0.02562 * 19 18 17 21 21 S 1.75882 * 109.59176 * 359.75608 * 20 19 18 22 22 C 1.46499 * 120.00024 * 224.49134 * 9 7 2 23 23 C 1.52999 * 117.50079 * 3.26202 * 22 9 7 24 24 C 1.53002 * 117.49490 * 294.60807 * 22 9 7 25 25 H 0.96998 * 119.99730 * 354.95640 * 1 2 3 26 26 H 1.09006 * 109.47094 * 60.00315 * 12 10 9 27 27 H 1.08998 * 109.47322 * 300.00373 * 12 10 9 28 28 H 0.97002 * 120.00333 * 344.99664 * 13 12 10 29 29 H 1.08004 * 122.53776 * 359.95656 * 18 17 14 30 30 H 1.08005 * 122.53935 * 180.02562 * 19 18 17 31 31 H 1.07997 * 125.20463 * 180.02562 * 20 19 18 32 32 H 1.09004 * 115.55145 * 148.94146 * 22 9 7 33 33 H 1.08998 * 117.49727 * 0.02562 * 23 22 9 34 34 H 1.09002 * 117.49554 * 145.02168 * 23 22 9 35 35 H 1.09002 * 117.49702 * 214.98542 * 24 22 9 36 36 H 1.08998 * 117.50038 * 359.97308 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0492 -1.2265 0.2884 9 7 1.3736 -2.3615 -0.3678 10 6 0.5766 -2.3775 -1.4546 11 8 0.4218 -1.3674 -2.1080 12 6 -0.1220 -3.6503 -1.8580 13 7 -0.9213 -3.4083 -3.0616 14 16 -1.4965 -4.6859 -3.9444 15 8 -0.3967 -5.5632 -4.1440 16 8 -2.2500 -4.1287 -5.0125 17 6 -2.6438 -5.5504 -2.9240 18 6 -3.9526 -5.3022 -2.8575 19 6 -4.6563 -6.1125 -1.9834 20 6 -3.9188 -7.0185 -1.3396 21 16 -2.2394 -6.8770 -1.8423 22 6 1.5609 -3.5816 0.4212 23 6 2.4157 -3.4807 1.6861 24 6 2.9614 -4.1971 0.4484 25 1 -0.4850 0.8368 0.0739 26 1 -0.7739 -3.9792 -1.0486 27 1 0.6194 -4.4223 -2.0638 28 1 -1.1137 -2.4997 -3.3415 29 1 -4.4274 -4.5274 -3.4413 30 1 -5.7218 -6.0183 -1.8340 31 1 -4.2961 -7.7328 -0.6228 32 1 0.7109 -4.2637 0.4412 33 1 2.8384 -2.5064 1.9315 34 1 2.1282 -4.0966 2.5382 35 1 3.0328 -5.2841 0.4866 36 1 3.7432 -3.6945 -0.1211 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299312743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:36 Heat of formation + Delta-G solvation = -25.102321 kcal Electronic energy + Delta-G solvation = -24045.866558 eV Core-core repulsion = 20364.903807 eV Total energy + Delta-G solvation = -3680.962751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -38.76851 -37.99259 -37.04476 -36.34733 -35.76148 -34.23585 -32.73667 -31.02411 -30.04586 -27.14367 -24.59319 -24.34363 -21.76017 -21.28763 -20.52140 -19.58688 -19.19940 -18.56480 -17.60920 -16.33431 -16.19125 -15.99749 -15.70868 -15.02480 -14.74181 -14.59902 -14.20464 -13.87174 -13.69747 -13.38930 -13.11823 -12.79409 -12.67814 -12.29868 -11.99750 -11.96013 -11.87168 -11.68815 -11.49163 -11.11782 -11.00708 -10.96058 -10.91817 -10.67080 -10.21716 -10.03782 -9.81317 -9.54323 -9.29811 -8.79744 -8.73091 -8.19565 -7.13463 -6.19279 -3.95221 0.24738 0.55547 1.28521 1.62403 2.30125 3.17075 3.25994 3.36387 3.38175 3.80328 3.97827 4.19685 4.56804 4.67025 4.69913 4.78328 5.08117 5.16603 5.19662 5.36946 5.51917 5.61778 5.68386 5.70137 5.77890 5.79798 5.98286 6.06412 6.11902 6.20391 6.41234 6.69490 6.88408 7.34177 7.55966 8.18758 8.95491 9.03210 9.55043 10.13635 10.89774 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.004160 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.245374 B = 6728.671278 C = 7360.848127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.286 1.286 7 C -0.347 4.347 8 H 0.080 0.920 9 N -0.422 5.422 10 C 0.482 3.518 11 O -0.525 6.525 12 C 0.101 3.899 13 N -1.092 6.092 14 S 2.722 3.278 15 O -0.954 6.954 16 O -0.956 6.956 17 C -0.790 4.790 18 C 0.006 3.994 19 C -0.163 4.163 20 C -0.178 4.178 21 S 0.215 5.785 22 C 0.067 3.933 23 C -0.171 4.171 24 C -0.205 4.205 25 H 0.265 0.735 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.429 0.571 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.172 0.828 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.954 -14.174 0.547 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.474 4.474 8 H 0.098 0.902 9 N -0.144 5.144 10 C 0.267 3.733 11 O -0.403 6.403 12 C -0.029 4.029 13 N -0.857 5.857 14 S 2.806 3.194 15 O -0.944 6.944 16 O -0.946 6.946 17 C -0.990 4.990 18 C -0.029 4.029 19 C -0.194 4.194 20 C -0.316 4.316 21 S 0.480 5.520 22 C -0.039 4.039 23 C -0.209 4.209 24 C -0.244 4.244 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.269 0.731 29 H 0.173 0.827 30 H 0.166 0.834 31 H 0.190 0.810 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.595 -14.695 -0.251 15.726 hybrid contribution -1.651 1.666 0.503 2.399 sum -7.246 -13.029 0.252 14.910 Atomic orbital electron populations 1.69823 1.06566 1.27464 1.42778 1.25261 0.94879 0.99482 0.94119 0.86121 0.79828 0.82414 0.77509 1.19522 1.20609 1.21188 1.18911 0.94533 0.83592 1.50369 0.90204 1.42683 1.43781 1.07148 1.20743 1.19498 0.83575 0.88320 0.81873 1.90522 1.62662 1.34046 1.53024 1.21154 0.95051 1.00035 0.86701 1.55095 1.66163 1.23321 1.41163 1.01136 0.73061 0.72693 0.72486 1.93591 1.50671 1.65978 1.84137 1.93584 1.72697 1.77925 1.50390 1.36084 1.16123 1.20025 1.26763 1.20072 0.91004 0.97226 0.94596 1.20430 1.02009 0.97626 0.99351 1.26249 0.97858 1.03440 1.04077 1.84235 1.06360 1.27454 1.33957 1.21777 0.92904 0.91546 0.97721 1.23073 1.04203 1.02552 0.91022 1.23346 0.99453 0.98702 1.02943 0.92544 0.90640 0.88927 0.73100 0.82712 0.83361 0.81017 0.87872 0.87405 0.89705 0.89533 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.68 11.74 55.50 0.65 -23.03 16 2 C 0.07 1.99 4.39 -17.47 -0.08 1.91 16 3 Si 0.91 21.35 29.59 -169.99 -5.03 16.32 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.35 -9.09 7.91 -14.93 -0.12 -9.21 16 8 H 0.08 2.03 7.27 -52.49 -0.38 1.65 16 9 N -0.42 -10.06 2.83 -107.73 -0.31 -10.37 16 10 C 0.48 11.62 7.03 -10.99 -0.08 11.54 16 11 O -0.53 -14.63 13.50 5.55 0.07 -14.55 16 12 C 0.10 1.86 5.32 -5.20 -0.03 1.84 16 13 N -1.09 -19.12 5.93 -11.66 -0.07 -19.19 16 14 S 2.72 43.13 5.88 -107.50 -0.63 42.50 16 15 O -0.95 -16.85 17.38 -57.17 -0.99 -17.84 16 16 O -0.96 -16.81 17.80 -57.17 -1.02 -17.83 16 17 C -0.79 -10.54 6.55 29.04 0.19 -10.35 16 18 C 0.01 0.07 9.84 -41.21 -0.41 -0.33 16 19 C -0.16 -1.56 10.18 -41.21 -0.42 -1.98 16 20 C -0.18 -1.61 11.23 29.04 0.33 -1.28 16 21 S 0.21 2.43 23.21 -107.50 -2.50 -0.07 16 22 C 0.07 1.25 5.87 -67.93 -0.40 0.85 16 23 C -0.17 -2.89 9.80 -26.70 -0.26 -3.15 16 24 C -0.21 -3.32 10.36 -26.70 -0.28 -3.59 16 25 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 26 H 0.08 1.23 7.57 -51.93 -0.39 0.83 16 27 H 0.09 1.55 7.71 -51.93 -0.40 1.15 16 28 H 0.43 7.96 7.70 -34.47 -0.27 7.69 16 29 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 31 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.10 1.67 6.96 -51.93 -0.36 1.31 16 33 H 0.11 2.03 6.73 -51.93 -0.35 1.68 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -34.56 338.53 -10.08 -44.64 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.82 Total: 8.06 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.55 Total: -13.75 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.28 Total: -52.59 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -1.94 Total: -50.22 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 16 Polarization: 45.56 SS G_CDS: -3.13 Total: 42.43 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.56 -10.08 -44.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299312743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.543 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds