Wall clock time and date at job start Tue Mar 31 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00078 * 2 1 4 4 C 1.52998 * 109.47343 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47219 * 66.26342 * 4 3 2 6 6 C 1.36936 * 120.00101 * 272.59352 * 5 4 3 7 7 H 1.07998 * 120.00160 * 142.22733 * 6 5 4 8 8 C 1.38815 * 120.00201 * 322.22218 * 6 5 4 9 9 N 1.31609 * 120.00199 * 155.84799 * 8 6 5 10 10 Si 1.86808 * 119.99842 * 335.85392 * 8 6 5 11 11 H 1.48495 * 109.47062 * 95.11581 * 10 8 6 12 12 H 1.48505 * 109.46966 * 215.11859 * 10 8 6 13 13 H 1.48498 * 109.47051 * 335.11190 * 10 8 6 14 14 S 1.65604 * 119.99955 * 92.59294 * 5 4 3 15 15 O 1.42095 * 106.40108 * 156.46091 * 14 5 4 16 16 O 1.42096 * 106.39827 * 23.53813 * 14 5 4 17 17 C 1.76199 * 107.21411 * 270.00221 * 14 5 4 18 18 C 1.38257 * 119.99599 * 269.97148 * 17 14 5 19 19 C 1.38218 * 120.00047 * 180.02562 * 18 17 14 20 20 C 1.38260 * 119.99716 * 359.95905 * 19 18 17 21 21 C 1.38217 * 120.00084 * 0.13740 * 20 19 18 22 22 N 1.48012 * 120.00112 * 179.97438 * 21 20 19 23 23 O 1.21799 * 120.00110 * 179.88510 * 22 21 20 24 24 O 1.21800 * 119.99988 * 359.87952 * 22 21 20 25 25 C 1.38208 * 120.00242 * 90.00246 * 17 14 5 26 26 H 1.09000 * 109.46893 * 59.99565 * 1 2 3 27 27 H 1.08996 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46856 * 300.00195 * 1 2 3 29 29 H 1.09001 * 109.47335 * 59.99944 * 3 2 1 30 30 H 1.09002 * 109.47445 * 300.00106 * 3 2 1 31 31 H 1.09006 * 109.46896 * 306.26949 * 4 3 2 32 32 H 1.08997 * 109.47491 * 186.27070 * 4 3 2 33 33 H 0.97000 * 120.00301 * 180.02562 * 9 8 6 34 34 H 1.07999 * 120.00573 * 359.97438 * 18 17 14 35 35 H 1.07999 * 120.00379 * 179.97438 * 19 18 17 36 36 H 1.07999 * 120.00131 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.99940 * 359.69475 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9779 0.5921 -1.2653 6 6 4.0482 -0.7692 -1.3960 7 1 3.7697 -1.2372 -2.3286 8 6 4.4777 -1.5476 -0.3299 9 7 4.1172 -2.8108 -0.2502 10 14 5.5671 -0.8019 0.9918 11 1 4.7259 -0.3452 2.1271 12 1 6.5334 -1.8228 1.4709 13 1 6.3081 0.3548 0.4280 14 16 4.3929 1.5686 -2.5368 15 8 5.2636 0.8058 -3.3609 16 8 4.7536 2.8240 -1.9774 17 6 2.9308 1.8459 -3.4802 18 6 2.6018 0.9882 -4.5134 19 6 1.4552 1.2059 -5.2539 20 6 0.6368 2.2810 -4.9607 21 6 0.9668 3.1396 -3.9291 22 7 0.0910 4.2909 -3.6156 23 8 0.3806 5.0463 -2.7051 24 8 -0.9194 4.4830 -4.2681 25 6 2.1132 2.9211 -3.1878 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8500 0.5498 0.8277 32 1 3.9784 2.1743 0.1116 33 1 4.4170 -3.3547 0.4950 34 1 3.2412 0.1484 -4.7426 35 1 1.1984 0.5362 -6.0613 36 1 -0.2593 2.4510 -5.5390 37 1 2.3679 3.5886 -2.3778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316525842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:10 Heat of formation + Delta-G solvation = -65.721018 kcal Electronic energy + Delta-G solvation = -27596.899779 eV Core-core repulsion = 23471.422798 eV Total energy + Delta-G solvation = -4125.476981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.24812 -39.42658 -37.68241 -36.64332 -36.46669 -35.56894 -35.03520 -32.20286 -32.08282 -31.71284 -29.17009 -26.66637 -25.94900 -24.28287 -23.64738 -22.67541 -22.32606 -19.94039 -18.75024 -18.42430 -17.61717 -17.38102 -16.98302 -16.86920 -16.26527 -15.86229 -15.63115 -15.55689 -14.89096 -14.48704 -14.43617 -14.15998 -13.50652 -13.05385 -12.98986 -12.60515 -12.35641 -12.22491 -12.20113 -11.78915 -11.63951 -11.40004 -11.32008 -11.26424 -11.21031 -11.01453 -10.95984 -10.78069 -10.62725 -10.20642 -10.03748 -9.96826 -9.70824 -9.18478 -8.97884 -8.22631 -6.50775 -4.02544 -0.25840 0.44537 1.01644 1.24254 1.31661 2.94561 3.06840 3.23278 3.28166 3.79811 4.14479 4.17093 4.27369 4.30672 4.42486 4.61498 4.70304 4.80148 4.84821 5.20671 5.26948 5.42147 5.46416 5.50168 5.65440 5.70425 5.71736 5.75069 5.77842 5.87562 6.02050 6.02939 6.31979 6.35943 6.79277 7.56713 7.57141 7.72240 8.12994 8.95408 9.03131 10.58003 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.005445 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.644696 B = 5141.370285 C = 5627.505190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.345 6.345 3 C 0.049 3.951 4 C 0.112 3.888 5 N -0.857 5.857 6 C -0.259 4.259 7 H 0.106 0.894 8 C 0.080 3.920 9 N -0.838 5.838 10 Si 0.866 3.134 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.262 1.262 14 S 2.601 3.399 15 O -0.956 6.956 16 O -0.994 6.994 17 C -0.645 4.645 18 C 0.036 3.964 19 C -0.136 4.136 20 C -0.019 4.019 21 C -0.070 4.070 22 N 0.033 4.967 23 O -0.158 6.158 24 O -0.165 6.165 25 C 0.036 3.964 26 H 0.027 0.973 27 H 0.082 0.918 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.276 0.724 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.177 5.870 -4.519 10.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.262 6.262 3 C -0.030 4.030 4 C -0.014 4.014 5 N -0.688 5.688 6 C -0.400 4.400 7 H 0.123 0.877 8 C -0.133 4.133 9 N -0.475 5.475 10 Si 0.693 3.307 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.186 1.186 14 S 2.701 3.299 15 O -0.946 6.946 16 O -0.983 6.983 17 C -0.727 4.727 18 C 0.017 3.983 19 C -0.155 4.155 20 C -0.039 4.039 21 C -0.154 4.154 22 N 0.552 4.448 23 O -0.375 6.375 24 O -0.380 6.380 25 C 0.016 3.984 26 H 0.045 0.955 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.179 0.821 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.835 5.531 -4.945 9.439 hybrid contribution -0.719 0.775 0.575 1.203 sum -6.555 6.306 -4.369 10.090 Atomic orbital electron populations 1.22672 0.83283 1.02203 0.98516 1.88292 1.17276 1.25777 1.94878 1.23042 0.95358 0.85768 0.98864 1.21637 0.91808 0.99119 0.88882 1.52967 1.77258 1.15001 1.23528 1.18611 1.40985 0.77231 1.03169 0.87677 1.25359 0.95237 0.94715 0.97977 1.69812 1.39485 1.07208 1.31013 0.87114 0.81491 0.79984 0.82062 1.19687 1.21171 1.18593 1.07257 0.73418 0.73699 0.75499 1.93462 1.60501 1.70603 1.69994 1.93424 1.81152 1.46514 1.77257 1.31805 1.24636 1.02582 1.13639 1.21526 0.93799 0.94774 0.88233 1.21389 0.94765 0.97713 1.01664 1.21243 0.99142 0.91131 0.92349 1.21178 0.96302 0.93045 1.04871 1.43565 1.00608 1.01311 0.99350 1.94562 1.77808 1.42548 1.22553 1.94510 1.15205 1.78491 1.49824 1.20765 0.88446 0.93895 0.95291 0.95455 0.89900 0.95085 0.93271 0.94772 0.89932 0.88889 0.91357 0.82056 0.82770 0.82668 0.81841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.34 -6.68 10.11 -35.23 -0.36 -7.04 16 3 C 0.05 0.85 6.28 37.16 0.23 1.08 16 4 C 0.11 2.19 5.00 -4.04 -0.02 2.17 16 5 N -0.86 -18.49 2.45 -59.91 -0.15 -18.63 16 6 C -0.26 -6.29 8.73 -15.06 -0.13 -6.42 16 7 H 0.11 2.64 8.06 -52.49 -0.42 2.22 16 8 C 0.08 2.00 5.28 -17.43 -0.09 1.91 16 9 N -0.84 -21.98 13.97 55.49 0.78 -21.21 16 10 Si 0.87 19.58 25.20 -169.99 -4.28 15.29 16 11 H -0.27 -5.77 6.64 56.52 0.38 -5.39 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 14 S 2.60 52.78 5.65 -107.50 -0.61 52.17 16 15 O -0.96 -21.65 16.50 -57.17 -0.94 -22.60 16 16 O -0.99 -21.05 15.86 -57.17 -0.91 -21.96 16 17 C -0.65 -10.64 5.94 -39.59 -0.24 -10.88 16 18 C 0.04 0.50 9.52 -39.58 -0.38 0.12 16 19 C -0.14 -1.49 10.05 -39.58 -0.40 -1.89 16 20 C -0.02 -0.23 9.56 -39.58 -0.38 -0.60 16 21 C -0.07 -1.01 6.85 -79.95 -0.55 -1.56 16 22 N 0.03 0.50 4.45 33.96 0.15 0.65 16 23 O -0.16 -2.56 18.45 -29.46 -0.54 -3.11 16 24 O -0.17 -2.48 18.45 -29.46 -0.54 -3.02 16 25 C 0.04 0.56 7.62 -39.58 -0.30 0.26 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.55 6.64 -51.93 -0.34 0.21 16 31 H 0.08 1.71 3.32 -51.93 -0.17 1.54 16 32 H 0.09 1.63 6.96 -51.93 -0.36 1.27 16 33 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.16 2.16 7.62 -52.49 -0.40 1.76 16 35 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.16 1.39 7.61 -52.49 -0.40 0.99 16 37 H 0.16 2.49 7.17 -52.48 -0.38 2.11 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -30.09 334.09 -7.26 -37.34 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.75 Total: 1.29 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -1.14 Total: -14.22 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.78 Total: -39.19 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -3.29 Total: -57.72 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.28 Total: 15.29 kcal Atomic # 16 Polarization: 52.78 SS G_CDS: -0.61 Total: 52.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.09 -7.26 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316525842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.376 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds