Wall clock time and date at job start Tue Mar 31 2020 05:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00175 * 2 1 4 4 H 1.48503 * 109.47438 * 270.00002 * 3 2 1 5 5 H 1.48501 * 109.47069 * 30.00616 * 3 2 1 6 6 H 1.48505 * 109.46700 * 150.00091 * 3 2 1 7 7 C 1.37883 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99876 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00003 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47031 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99891 * 170.00397 * 10 9 7 12 12 C 1.53237 * 109.34036 * 187.25915 * 11 10 9 13 13 N 1.47083 * 108.51838 * 306.16508 * 12 11 10 14 14 C 1.34775 * 120.88411 * 231.18845 * 13 12 11 15 15 O 1.21279 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00049 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.63358 * 319.60582 * 16 14 13 18 18 C 1.52904 * 109.63355 * 79.99869 * 16 14 13 19 19 C 1.50716 * 109.95437 * 170.30246 * 18 16 14 20 20 C 1.38684 * 118.47918 * 163.25352 * 19 18 16 21 21 C 1.38035 * 120.34608 * 180.08517 * 20 19 18 22 22 C 1.38261 * 119.82493 * 359.34782 * 21 20 19 23 23 C 1.38014 * 119.86926 * 0.67525 * 22 21 20 24 24 C 1.37823 * 121.66425 * 343.09788 * 19 18 16 25 25 C 1.50623 * 121.85207 * 0.43584 * 24 19 18 26 26 N 1.46632 * 110.49509 * 342.48442 * 25 24 19 27 27 C 1.47082 * 118.23370 * 51.45893 * 13 12 11 28 28 C 1.46894 * 111.00049 * 294.30671 * 10 9 7 29 29 H 0.97006 * 119.99626 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46690 * 60.00385 * 9 7 2 31 31 H 1.08992 * 109.47244 * 300.00554 * 9 7 2 32 32 H 1.08996 * 109.49459 * 67.29180 * 11 10 9 33 33 H 1.09002 * 109.51555 * 307.22804 * 11 10 9 34 34 H 1.08994 * 109.63047 * 186.46443 * 12 11 10 35 35 H 1.08998 * 109.63159 * 65.87602 * 12 11 10 36 36 H 1.08995 * 109.38508 * 50.15770 * 18 16 14 37 37 H 1.08997 * 109.38701 * 290.45326 * 18 16 14 38 38 H 1.08002 * 119.82446 * 359.80175 * 20 19 18 39 39 H 1.07993 * 120.08799 * 179.66301 * 21 20 19 40 40 H 1.08002 * 120.06698 * 180.35449 * 22 21 20 41 41 H 1.08004 * 119.81416 * 179.72828 * 23 22 21 42 42 H 1.09002 * 109.26910 * 222.22139 * 25 24 19 43 43 H 1.08998 * 109.24517 * 102.72957 * 25 24 19 44 44 H 1.00898 * 111.00057 * 175.93742 * 26 25 24 45 45 H 1.09005 * 109.62934 * 68.25182 * 27 13 12 46 46 H 1.09005 * 109.62874 * 188.82934 * 27 13 12 47 47 H 1.09004 * 109.49442 * 292.70180 * 28 10 9 48 48 H 1.08999 * 109.49444 * 52.78448 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5209 -4.8935 0.2375 12 6 2.5634 -6.0033 0.4105 13 7 3.4613 -5.9864 -0.7544 14 6 3.7116 -7.1125 -1.4513 15 8 3.1942 -8.1582 -1.1202 16 6 4.6354 -7.0725 -2.6413 17 1 4.4515 -6.1656 -3.2173 18 6 6.0881 -7.0927 -2.1648 19 6 7.0118 -7.2921 -3.3390 20 6 8.3565 -6.9919 -3.1809 21 6 9.2364 -7.1585 -4.2314 22 6 8.7770 -7.6398 -5.4434 23 6 7.4389 -7.9383 -5.6018 24 6 6.5517 -7.7638 -4.5495 25 6 5.1001 -8.0979 -4.7725 26 7 4.4059 -8.2525 -3.4902 27 6 4.0835 -4.7091 -1.1348 28 6 2.9766 -3.6492 -1.2503 29 1 -0.4850 0.8401 -0.0004 30 1 0.6239 -2.5566 -0.8904 31 1 0.6245 -2.5571 0.8896 32 1 0.8794 -5.1263 -0.6123 33 1 0.9154 -4.8194 1.1408 34 1 2.0628 -6.9694 0.4727 35 1 3.1390 -5.8266 1.3191 36 1 6.2246 -7.9080 -1.4545 37 1 6.3220 -6.1465 -1.6769 38 1 8.7163 -6.6216 -2.2324 39 1 10.2817 -6.9183 -4.1054 40 1 9.4630 -7.7770 -6.2662 41 1 7.0802 -8.3100 -6.5503 42 1 5.0275 -9.0286 -5.3354 43 1 4.6301 -7.2959 -5.3416 44 1 3.4193 -8.4111 -3.6299 45 1 4.8025 -4.4104 -0.3718 46 1 4.5885 -4.8193 -2.0946 47 1 2.3148 -3.8994 -2.0796 48 1 3.4271 -2.6723 -1.4260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316753349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:44 Heat of formation + Delta-G solvation = 8.198793 kcal Electronic energy + Delta-G solvation = -28247.582266 eV Core-core repulsion = 24495.084682 eV Total energy + Delta-G solvation = -3752.497583 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.77048 -39.60582 -37.69752 -36.33682 -34.50127 -33.07411 -32.42871 -31.33564 -30.85466 -29.56168 -28.19520 -25.77970 -24.88799 -24.24095 -23.26435 -22.43136 -21.99987 -20.80848 -19.74678 -18.74016 -17.40370 -17.03268 -16.46668 -16.42828 -15.78886 -15.27023 -14.95184 -14.80578 -14.72998 -14.49596 -14.46006 -14.17572 -13.85116 -13.66664 -13.42266 -13.28480 -13.10635 -12.96366 -12.61007 -12.29633 -12.08782 -11.94650 -11.78396 -11.34358 -11.27453 -11.13285 -11.07873 -10.99338 -10.80043 -10.66928 -10.57835 -9.93935 -9.59364 -9.32519 -9.13310 -8.85675 -8.61350 -8.56164 -8.47751 -7.38986 -6.10570 -4.12879 1.11377 1.13850 2.60293 2.94163 3.26047 3.33108 3.36525 3.49903 3.89032 4.25648 4.34815 4.40304 4.64456 4.65718 4.71475 4.80691 4.86622 4.90975 5.10229 5.14232 5.21428 5.25585 5.25887 5.32935 5.39915 5.45832 5.46950 5.58609 5.67033 5.70609 5.76100 5.79557 5.88312 5.97945 6.19099 6.22818 6.26702 6.34124 6.38045 6.39449 6.52311 6.66716 6.74648 7.05388 7.16552 7.22313 7.48272 7.69397 7.96076 8.06586 8.20495 8.42091 8.94259 9.51893 11.00221 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.002829 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.119883 B = 9894.976471 C =11141.673279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.605 5.605 14 C 0.516 3.484 15 O -0.533 6.533 16 C 0.069 3.931 17 H 0.068 0.932 18 C -0.066 4.066 19 C -0.064 4.064 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.079 4.079 25 C 0.096 3.904 26 N -0.662 5.662 27 C 0.105 3.895 28 C 0.050 3.950 29 H 0.262 0.738 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.026 0.974 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.355 0.645 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.024 0.976 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.678 -15.010 -9.667 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.088 4.088 12 C -0.004 4.004 13 N -0.339 5.339 14 C 0.302 3.698 15 O -0.409 6.409 16 C -0.044 4.044 17 H 0.086 0.914 18 C -0.104 4.104 19 C -0.064 4.064 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.134 4.134 24 C -0.079 4.079 25 C -0.033 4.033 26 N -0.295 5.295 27 C -0.018 4.018 28 C -0.079 4.079 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.111 0.889 43 H 0.065 0.935 44 H 0.175 0.825 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.042 0.958 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.037 -15.746 -8.798 23.482 hybrid contribution -0.739 1.647 -1.158 2.145 sum 14.298 -14.098 -9.956 22.412 Atomic orbital electron populations 1.69957 1.06117 1.26909 1.50669 1.24999 0.94863 0.99386 0.95319 0.86497 0.79834 0.83045 0.78048 1.20727 1.21224 1.19697 1.21129 0.93454 0.89847 1.50493 0.91789 1.19728 0.89982 0.87147 0.96245 1.62079 1.28112 1.02751 1.33079 1.22407 0.94942 0.90514 1.00966 1.21770 0.91687 0.99520 0.87415 1.48240 1.46719 1.08465 1.30457 1.20294 0.81868 0.83474 0.84143 1.90688 1.51614 1.29884 1.68750 1.21489 0.95441 0.93692 0.93745 0.91419 1.20477 0.90394 1.03367 0.96134 1.19464 0.94112 0.98561 0.94284 1.21110 0.92653 1.00558 0.99244 1.21090 0.99622 0.99735 0.93370 1.21049 0.95535 0.99901 0.97663 1.21012 0.93348 1.00744 0.98327 1.19581 0.95257 0.99518 0.93577 1.20835 0.90535 1.01146 0.90740 1.60409 1.17370 1.37688 1.14005 1.22210 0.96348 0.82707 1.00517 1.22409 0.95028 0.99013 0.91434 0.92831 0.99138 0.94978 0.95592 0.89975 0.89355 0.90807 0.89186 0.89614 0.85882 0.86033 0.86085 0.86057 0.88912 0.93523 0.82504 0.90278 0.90248 0.95775 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.51 -13.66 8.41 -34.44 -0.29 -13.95 16 8 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 9 C 0.19 4.83 4.72 -4.97 -0.02 4.81 16 10 N -0.54 -10.79 4.62 -235.48 -1.09 -11.88 16 11 C 0.04 0.72 5.62 -3.70 -0.02 0.69 16 12 C 0.12 1.79 6.60 -3.60 -0.02 1.77 16 13 N -0.61 -8.74 3.00 -172.18 -0.52 -9.25 16 14 C 0.52 7.47 6.83 -10.99 -0.08 7.39 16 15 O -0.53 -9.34 15.83 5.56 0.09 -9.25 16 16 C 0.07 0.81 2.00 -68.77 -0.14 0.68 16 17 H 0.07 0.76 6.46 -51.93 -0.34 0.42 16 18 C -0.07 -0.71 5.08 -27.92 -0.14 -0.85 16 19 C -0.06 -0.67 5.77 -104.60 -0.60 -1.28 16 20 C -0.12 -1.10 9.66 -39.49 -0.38 -1.48 16 21 C -0.12 -1.01 10.05 -39.65 -0.40 -1.41 16 22 C -0.12 -1.01 10.05 -39.65 -0.40 -1.41 16 23 C -0.12 -1.01 9.65 -39.48 -0.38 -1.39 16 24 C -0.08 -0.80 5.79 -104.62 -0.61 -1.40 16 25 C 0.10 0.89 6.34 -5.16 -0.03 0.86 16 26 N -0.66 -7.55 6.27 -109.33 -0.69 -8.24 16 27 C 0.11 1.43 5.89 -3.36 -0.02 1.41 16 28 C 0.05 0.88 5.47 -3.47 -0.02 0.86 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H -0.01 -0.25 8.13 -51.93 -0.42 -0.67 16 31 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.39 7.99 -51.93 -0.41 0.98 16 34 H 0.09 1.33 7.06 -51.93 -0.37 0.97 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 37 H 0.09 0.81 7.18 -51.93 -0.37 0.44 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.36 3.99 8.46 -39.29 -0.33 3.65 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.08 0.89 5.18 -51.93 -0.27 0.62 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.10 1.82 6.67 -51.93 -0.35 1.47 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -31.53 376.97 -11.89 -43.42 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.43 Total: 2.21 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -3.65 Total: -3.27 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -1.55 Total: -54.64 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.53 -11.89 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316753349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.616 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds