Wall clock time and date at job start Tue Mar 31 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99752 * 2 1 4 4 H 1.48496 * 109.47184 * 269.99883 * 3 2 1 5 5 H 1.48499 * 109.47225 * 30.00102 * 3 2 1 6 6 H 1.48498 * 109.46979 * 149.99922 * 3 2 1 7 7 C 1.37874 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99539 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00097 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46932 * 174.79287 * 9 7 2 11 11 C 1.46894 * 110.99976 * 64.83964 * 10 9 7 12 12 C 1.53239 * 109.34144 * 172.74199 * 11 10 9 13 13 N 1.47079 * 108.67997 * 53.73465 * 12 11 10 14 14 C 1.34779 * 120.88093 * 128.90976 * 13 12 11 15 15 O 1.21280 * 120.00324 * 5.14315 * 14 13 12 16 16 C 1.50700 * 119.99893 * 185.13219 * 14 13 12 17 17 H 1.09003 * 109.26667 * 31.08582 * 16 14 13 18 18 N 1.46630 * 109.26856 * 150.58768 * 16 14 13 19 19 C 1.47149 * 110.27574 * 172.78280 * 18 16 14 20 20 C 1.52893 * 108.47087 * 288.70321 * 19 18 16 21 21 C 1.50722 * 109.94733 * 50.45304 * 20 19 18 22 22 C 1.38670 * 118.48517 * 163.22903 * 21 20 19 23 23 C 1.38035 * 120.35025 * 179.57756 * 22 21 20 24 24 C 1.38266 * 119.82368 * 0.02562 * 23 22 21 25 25 C 1.38014 * 119.86972 * 0.09653 * 24 23 22 26 26 C 1.37837 * 121.65857 * 342.99757 * 21 20 19 27 27 C 1.47149 * 118.19388 * 309.15122 * 13 12 11 28 28 C 1.46902 * 111.00229 * 300.53471 * 10 9 7 29 29 H 0.96999 * 120.00192 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46962 * 54.79823 * 9 7 2 31 31 H 1.08999 * 109.47563 * 294.79399 * 9 7 2 32 32 H 1.09003 * 109.49185 * 52.78828 * 11 10 9 33 33 H 1.09001 * 109.49649 * 292.70706 * 11 10 9 34 34 H 1.09001 * 109.62893 * 173.53959 * 12 11 10 35 35 H 1.08998 * 109.63158 * 293.92616 * 12 11 10 36 36 H 1.00901 * 111.00278 * 296.18669 * 18 16 14 37 37 H 1.08999 * 109.64454 * 169.00876 * 19 18 16 38 38 H 1.09009 * 109.81433 * 48.49315 * 19 18 16 39 39 H 1.09002 * 109.39175 * 290.30957 * 20 19 18 40 40 H 1.08996 * 109.31661 * 170.54901 * 20 19 18 41 41 H 1.08008 * 119.82508 * 359.60069 * 22 21 20 42 42 H 1.08000 * 120.09078 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.06547 * 180.09120 * 24 23 22 44 44 H 1.08000 * 119.80832 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.45998 * 291.13862 * 27 13 12 46 46 H 1.09000 * 109.80159 * 170.74922 * 27 13 12 47 47 H 1.08994 * 109.49230 * 307.21829 * 28 10 9 48 48 H 1.08998 * 109.48607 * 67.29707 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2007 -3.6127 -0.1268 11 6 3.0815 -3.6891 1.0463 12 6 3.9296 -4.9627 0.9621 13 7 4.6202 -4.9838 -0.3362 14 6 5.9505 -5.1880 -0.4089 15 8 6.5796 -5.4499 0.5944 16 6 6.6562 -5.0910 -1.7369 17 1 6.1426 -4.3630 -2.3649 18 7 8.0385 -4.6527 -1.5194 19 6 8.7974 -4.7154 -2.7786 20 6 9.0338 -6.1848 -3.1290 21 6 7.7335 -6.9442 -3.0654 22 6 7.6619 -8.1856 -3.6792 23 6 6.4926 -8.9181 -3.6372 24 6 5.3868 -8.4110 -2.9800 25 6 5.4563 -7.1745 -2.3709 26 6 6.6304 -6.4366 -2.4131 27 6 3.8203 -4.7707 -1.5528 28 6 2.9766 -3.5047 -1.3696 29 1 -0.4850 0.8400 0.0004 30 1 0.5560 -2.5173 -0.8401 31 1 0.6965 -2.5985 0.9326 32 1 2.4777 -3.7135 1.9534 33 1 3.7355 -2.8174 1.0675 34 1 4.6639 -4.9675 1.7676 35 1 3.2856 -5.8378 1.0486 36 1 8.0657 -3.7234 -1.1273 37 1 9.7550 -4.2098 -2.6548 38 1 8.2302 -4.2354 -3.5762 39 1 9.7402 -6.6168 -2.4201 40 1 9.4442 -6.2537 -4.1364 41 1 8.5257 -8.5816 -4.1926 42 1 6.4417 -9.8846 -4.1163 43 1 4.4705 -8.9814 -2.9435 44 1 4.5919 -6.7793 -1.8582 45 1 3.1655 -5.6275 -1.7115 46 1 4.4800 -4.6499 -2.4120 47 1 2.2967 -3.3953 -2.2144 48 1 3.6320 -2.6356 -1.3147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317085328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:56 Heat of formation + Delta-G solvation = 16.333281 kcal Electronic energy + Delta-G solvation = -29069.913174 eV Core-core repulsion = 25317.768328 eV Total energy + Delta-G solvation = -3752.144845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.94634 -39.24702 -37.60088 -36.46836 -34.56597 -33.09117 -32.29372 -31.23887 -30.61344 -29.48308 -28.19176 -25.85389 -24.95772 -23.53285 -23.42723 -22.58251 -22.12922 -20.58546 -19.67610 -18.61502 -17.52146 -17.05024 -16.47923 -16.26072 -15.74648 -15.43062 -15.01295 -14.88317 -14.69437 -14.49710 -14.28882 -13.93787 -13.83683 -13.48130 -13.35436 -13.25018 -12.89298 -12.58540 -12.43062 -12.28166 -12.13370 -11.86919 -11.78918 -11.28684 -11.15931 -11.07792 -10.94589 -10.79934 -10.71118 -10.65979 -10.32192 -9.96250 -9.76131 -9.63549 -9.05487 -8.76826 -8.52560 -8.51257 -8.44865 -7.32434 -6.11560 -4.21255 1.15375 1.23203 2.70726 3.02243 3.20750 3.28660 3.31252 3.60523 3.93923 4.33113 4.40558 4.44645 4.59326 4.74660 4.77042 4.88552 4.94696 5.00984 5.09443 5.18669 5.22947 5.29918 5.32824 5.41484 5.45683 5.56666 5.57581 5.67503 5.72249 5.82079 5.84846 5.91350 5.95898 6.06483 6.27945 6.34090 6.37750 6.39784 6.53237 6.58598 6.64543 6.74993 6.81472 7.08312 7.14277 7.42244 7.55015 7.80153 7.90268 8.12592 8.18254 8.32779 8.88410 9.46316 10.93572 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.003255 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.241008 B = 8600.926589 C = 9201.969243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.539 5.539 11 C 0.050 3.950 12 C 0.117 3.883 13 N -0.608 5.608 14 C 0.523 3.477 15 O -0.522 6.522 16 C 0.111 3.889 17 H 0.073 0.927 18 N -0.662 5.662 19 C 0.056 3.944 20 C -0.078 4.078 21 C -0.061 4.061 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.069 4.069 27 C 0.103 3.897 28 C 0.051 3.949 29 H 0.263 0.737 30 H 0.036 0.964 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.353 0.647 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.030 -14.262 -9.095 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.080 4.080 12 C -0.005 4.005 13 N -0.343 5.343 14 C 0.309 3.691 15 O -0.396 6.396 16 C -0.002 4.002 17 H 0.090 0.910 18 N -0.294 5.294 19 C -0.073 4.073 20 C -0.115 4.115 21 C -0.061 4.061 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.070 4.070 27 C -0.020 4.020 28 C -0.079 4.079 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.172 0.828 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.151 0.849 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.154 -15.324 -8.320 22.459 hybrid contribution 0.322 2.616 -0.497 2.682 sum 14.476 -12.708 -8.817 21.184 Atomic orbital electron populations 1.69936 1.05995 1.26957 1.49838 1.24953 0.94762 0.99155 0.94784 0.86655 0.79954 0.83634 0.78154 1.20617 1.21036 1.19979 1.21715 0.93216 0.92110 1.52100 0.92662 1.19769 0.90692 0.85288 0.98012 1.62489 1.16887 1.46633 1.00365 1.22262 0.95187 0.95286 0.95240 1.21823 0.95242 0.98945 0.84535 1.48259 1.06564 1.70869 1.08570 1.20111 0.81682 0.77170 0.90161 1.90676 1.65253 1.46884 1.36828 1.20272 0.90676 0.95346 0.93952 0.90962 1.60241 1.10279 1.32142 1.26778 1.22007 0.98441 0.96591 0.90286 1.20584 0.94694 0.94421 1.01836 1.19513 0.94720 0.94986 0.96905 1.21055 0.98202 0.94349 1.00572 1.21116 0.93281 0.99710 0.99362 1.21063 0.98806 0.95745 0.98208 1.21518 0.97847 0.95084 0.99427 1.19114 0.94130 0.94997 0.98782 1.22173 0.94068 0.99560 0.86234 1.22225 0.96268 0.94539 0.94866 0.92709 0.94541 0.95247 0.90277 0.94039 0.89527 0.91301 0.82838 0.89674 0.94294 0.89625 0.90345 0.86037 0.86024 0.85803 0.84923 0.90659 0.90313 0.90188 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.55 -14.57 7.75 -34.44 -0.27 -14.83 16 8 H 0.06 1.46 5.88 -52.48 -0.31 1.15 16 9 C 0.19 4.58 5.11 -4.98 -0.03 4.55 16 10 N -0.54 -10.72 4.83 -235.77 -1.14 -11.86 16 11 C 0.05 0.92 5.24 -3.70 -0.02 0.90 16 12 C 0.12 1.87 6.57 -3.60 -0.02 1.85 16 13 N -0.61 -9.32 2.64 -172.41 -0.46 -9.78 16 14 C 0.52 8.39 6.08 -10.98 -0.07 8.32 16 15 O -0.52 -10.13 16.15 5.56 0.09 -10.04 16 16 C 0.11 1.47 2.21 -70.20 -0.15 1.31 16 17 H 0.07 0.89 6.21 -51.93 -0.32 0.57 16 18 N -0.66 -8.18 6.13 -109.29 -0.67 -8.85 16 19 C 0.06 0.52 6.58 -3.74 -0.02 0.49 16 20 C -0.08 -0.71 5.94 -27.93 -0.17 -0.88 16 21 C -0.06 -0.69 5.77 -104.60 -0.60 -1.29 16 22 C -0.12 -1.22 9.66 -39.50 -0.38 -1.60 16 23 C -0.12 -1.12 10.05 -39.65 -0.40 -1.52 16 24 C -0.12 -1.27 10.05 -39.65 -0.40 -1.67 16 25 C -0.12 -1.48 8.53 -39.48 -0.34 -1.82 16 26 C -0.07 -0.89 5.45 -104.63 -0.57 -1.46 16 27 C 0.10 1.42 4.59 -3.57 -0.02 1.41 16 28 C 0.05 0.89 5.16 -3.70 -0.02 0.87 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 33 H 0.04 0.86 6.91 -51.93 -0.36 0.50 16 34 H 0.09 1.42 7.10 -51.93 -0.37 1.05 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.35 4.12 8.88 -39.29 -0.35 3.77 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.35 8.05 -51.92 -0.42 -0.07 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.13 1.65 3.97 -52.49 -0.21 1.44 16 45 H 0.08 0.97 7.22 -51.93 -0.37 0.60 16 46 H 0.08 0.95 5.15 -51.93 -0.27 0.68 16 47 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 48 H 0.04 0.86 6.80 -51.93 -0.35 0.50 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -31.49 367.70 -11.59 -43.08 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.11 Total: 4.31 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.57 Total: -3.65 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -1.53 Total: -55.15 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.49 -11.59 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317085328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.413 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds