Wall clock time and date at job start Tue Mar 31 2020 05:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48508 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47146 * 300.00199 * 3 2 1 6 6 H 1.48500 * 109.47198 * 60.00274 * 3 2 1 7 7 C 1.37882 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99872 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00199 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47081 * 180.83872 * 9 7 2 11 11 C 1.46897 * 110.99815 * 65.12528 * 10 9 7 12 12 C 1.53241 * 109.35849 * 172.75955 * 11 10 9 13 13 N 1.47084 * 108.52288 * 53.81476 * 12 11 10 14 14 C 1.34777 * 120.88294 * 128.79221 * 13 12 11 15 15 O 1.21278 * 119.99691 * 354.71316 * 14 13 12 16 16 C 1.50700 * 120.00082 * 174.71222 * 14 13 12 17 17 H 1.09007 * 109.26515 * 336.94957 * 16 14 13 18 18 N 1.46628 * 109.27050 * 217.44010 * 16 14 13 19 19 C 1.47148 * 110.26198 * 187.17447 * 18 16 14 20 20 C 1.52894 * 108.47588 * 71.30106 * 19 18 16 21 21 C 1.50722 * 109.95655 * 309.58356 * 20 19 18 22 22 C 1.38676 * 118.48935 * 196.69812 * 21 20 19 23 23 C 1.38030 * 120.35250 * 180.41812 * 22 21 20 24 24 C 1.38268 * 119.82141 * 359.97438 * 23 22 21 25 25 C 1.38008 * 119.87291 * 359.92451 * 24 23 22 26 26 C 1.37830 * 121.65859 * 16.95907 * 21 20 19 27 27 C 1.47086 * 118.23520 * 308.81556 * 13 12 11 28 28 C 1.46891 * 111.02088 * 300.80292 * 10 9 7 29 29 H 0.96999 * 119.99759 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47268 * 60.83601 * 9 7 2 31 31 H 1.09004 * 109.47019 * 300.83636 * 9 7 2 32 32 H 1.09001 * 109.49731 * 52.78943 * 11 10 9 33 33 H 1.08996 * 109.49586 * 292.72658 * 11 10 9 34 34 H 1.09000 * 109.62944 * 173.52457 * 12 11 10 35 35 H 1.08998 * 109.62963 * 293.91083 * 12 11 10 36 36 H 1.00892 * 111.00074 * 310.64066 * 18 16 14 37 37 H 1.08994 * 109.65487 * 311.59542 * 19 18 16 38 38 H 1.09003 * 109.63609 * 190.98862 * 19 18 16 39 39 H 1.08999 * 109.39302 * 189.43704 * 20 19 18 40 40 H 1.08998 * 109.39364 * 69.73618 * 20 19 18 41 41 H 1.08006 * 119.82187 * 0.42166 * 22 21 20 42 42 H 1.08001 * 120.08882 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.06112 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.81164 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.62493 * 170.89449 * 27 13 12 46 46 H 1.08993 * 109.62468 * 291.47349 * 27 13 12 47 47 H 1.09000 * 109.47397 * 67.26673 * 28 10 9 48 48 H 1.09002 * 109.51495 * 307.22089 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 0.0191 11 6 2.9708 -3.6320 1.2730 12 6 3.8203 -4.9060 1.3331 13 7 4.6312 -4.9851 0.1085 14 6 5.9625 -5.1853 0.1721 15 8 6.5216 -5.2070 1.2480 16 6 6.7562 -5.3821 -1.0937 17 1 6.0926 -5.7357 -1.8830 18 7 7.8032 -6.3812 -0.8580 19 6 8.6977 -6.4667 -2.0233 20 6 9.5464 -5.1961 -2.0768 21 6 8.6609 -3.9811 -1.9703 22 6 9.1784 -2.7504 -2.3456 23 6 8.4040 -1.6113 -2.2556 24 6 7.1053 -1.6979 -1.7891 25 6 6.5886 -2.9224 -1.4173 26 6 7.3654 -4.0684 -1.5079 27 6 3.9507 -4.8395 -1.1873 28 6 3.0961 -3.5682 -1.1481 29 1 -0.4850 0.8401 0.0004 30 1 0.6354 -2.5633 -0.8977 31 1 0.6136 -2.5506 0.8821 32 1 2.2836 -3.6129 2.1188 33 1 3.6217 -2.7587 1.3133 34 1 4.4748 -4.8689 2.2039 35 1 3.1691 -5.7774 1.4014 36 1 8.3215 -6.1706 -0.0184 37 1 8.1056 -6.5503 -2.9346 38 1 9.3468 -7.3367 -1.9238 39 1 10.0919 -5.1647 -3.0199 40 1 10.2564 -5.2000 -1.2498 41 1 10.1927 -2.6830 -2.7104 42 1 8.8112 -0.6552 -2.5494 43 1 6.4961 -0.8090 -1.7167 44 1 5.5739 -2.9889 -1.0535 45 1 4.6915 -4.7584 -1.9828 46 1 3.3120 -5.7047 -1.3647 47 1 3.7453 -2.6956 -1.0747 48 1 2.5001 -3.5023 -2.0584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317085329.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:02 Heat of formation + Delta-G solvation = 8.765018 kcal Electronic energy + Delta-G solvation = -29528.140155 eV Core-core repulsion = 25775.667125 eV Total energy + Delta-G solvation = -3752.473030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.03342 -39.27199 -37.66300 -36.48065 -34.54336 -33.06020 -32.31089 -31.00882 -30.58434 -29.42878 -28.19084 -25.79756 -24.87714 -23.53275 -23.16308 -22.83286 -22.06179 -20.49865 -20.15953 -18.81224 -17.45417 -16.75406 -16.36607 -16.31620 -15.60028 -15.37871 -14.97892 -14.87312 -14.61174 -14.57306 -14.23869 -13.82361 -13.79380 -13.73601 -13.31847 -13.21432 -12.82775 -12.62581 -12.42501 -12.30023 -11.93492 -11.87368 -11.68271 -11.34935 -11.21020 -11.13084 -11.04685 -10.92726 -10.72829 -10.65203 -10.30650 -9.97949 -9.77064 -9.65393 -8.86720 -8.81963 -8.63333 -8.51461 -8.45746 -7.31340 -6.11255 -4.20665 1.18657 1.28534 2.65562 3.04090 3.20243 3.29232 3.31433 3.64807 4.08976 4.33354 4.42455 4.51610 4.55013 4.67233 4.79878 4.91965 4.95729 5.06712 5.15360 5.19280 5.24994 5.31103 5.39790 5.44135 5.49013 5.56848 5.61086 5.64717 5.69073 5.84807 5.87284 5.95138 5.96572 6.06504 6.32206 6.35617 6.38192 6.45368 6.56950 6.60327 6.67027 6.73006 6.90330 7.10343 7.14862 7.42812 7.52668 7.80630 7.90463 8.12526 8.18546 8.24983 8.88971 9.46927 10.93989 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.004246 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.609404 B = 6592.891297 C = 8063.824796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.188 3.812 10 N -0.539 5.539 11 C 0.050 3.950 12 C 0.115 3.885 13 N -0.603 5.603 14 C 0.530 3.470 15 O -0.541 6.541 16 C 0.109 3.891 17 H 0.112 0.888 18 N -0.663 5.663 19 C 0.057 3.943 20 C -0.119 4.119 21 C -0.075 4.075 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.110 4.110 27 C 0.102 3.898 28 C 0.048 3.952 29 H 0.262 0.738 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.356 0.644 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.133 0.867 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.045 0.955 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.280 -10.402 -6.458 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.714 3.286 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.263 5.263 11 C -0.080 4.080 12 C -0.007 4.007 13 N -0.336 5.336 14 C 0.317 3.683 15 O -0.418 6.418 16 C -0.004 4.004 17 H 0.130 0.870 18 N -0.293 5.293 19 C -0.072 4.072 20 C -0.158 4.158 21 C -0.075 4.075 22 C -0.140 4.140 23 C -0.132 4.132 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.112 4.112 27 C -0.021 4.021 28 C -0.081 4.081 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.176 0.824 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.151 0.849 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.063 0.937 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.733 -11.310 -6.070 20.305 hybrid contribution 1.248 2.965 0.011 3.217 sum 16.981 -8.346 -6.059 19.868 Atomic orbital electron populations 1.69943 1.05987 1.26818 1.49941 1.24938 0.94732 0.99100 0.94806 0.86633 0.80130 0.84066 0.77773 1.19890 1.20876 1.20870 1.21743 0.93234 0.92063 1.51963 0.92598 1.19774 0.90578 0.85238 0.98184 1.62473 1.16607 1.46881 1.00321 1.22254 0.96182 0.95245 0.94288 1.21852 0.93171 0.99006 0.86666 1.48152 1.06294 1.70719 1.08471 1.20106 0.82040 0.76014 0.90185 1.90652 1.69534 1.51265 1.30324 1.20487 0.94478 0.89005 0.96459 0.87025 1.60901 1.15439 1.46657 1.06339 1.22123 0.94579 0.96372 0.94168 1.21234 0.97915 0.93484 1.03170 1.19463 0.93486 0.95214 0.99371 1.21024 0.99710 0.92023 1.01232 1.21148 0.94407 0.98346 0.99328 1.21204 0.95740 0.97929 0.98399 1.21528 1.00620 0.92210 0.98652 1.19951 0.94526 0.95283 1.01467 1.22127 0.95831 1.00062 0.84068 1.22292 0.95294 0.94564 0.95963 0.92778 0.94913 0.94868 0.90255 0.94021 0.89462 0.91081 0.82408 0.90351 0.89431 0.90017 0.90343 0.86129 0.85958 0.85576 0.84938 0.90288 0.90530 0.93705 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.55 -14.44 7.77 -34.44 -0.27 -14.71 16 8 H 0.06 1.47 5.86 -52.49 -0.31 1.16 16 9 C 0.19 4.55 5.12 -4.98 -0.03 4.53 16 10 N -0.54 -10.66 4.83 -235.77 -1.14 -11.80 16 11 C 0.05 0.93 5.25 -3.70 -0.02 0.91 16 12 C 0.12 1.85 6.61 -3.60 -0.02 1.83 16 13 N -0.60 -9.29 2.69 -172.46 -0.46 -9.75 16 14 C 0.53 8.41 5.77 -10.99 -0.06 8.35 16 15 O -0.54 -10.18 15.68 5.56 0.09 -10.09 16 16 C 0.11 1.42 2.24 -70.20 -0.16 1.26 16 17 H 0.11 1.31 6.11 -51.93 -0.32 1.00 16 18 N -0.66 -7.76 6.61 -109.30 -0.72 -8.49 16 19 C 0.06 0.49 6.62 -3.74 -0.02 0.47 16 20 C -0.12 -1.03 5.82 -27.93 -0.16 -1.20 16 21 C -0.08 -0.88 5.77 -104.60 -0.60 -1.48 16 22 C -0.12 -1.35 9.66 -39.50 -0.38 -1.73 16 23 C -0.11 -1.36 10.05 -39.65 -0.40 -1.76 16 24 C -0.11 -1.61 10.05 -39.65 -0.40 -2.00 16 25 C -0.11 -1.66 8.54 -39.48 -0.34 -2.00 16 26 C -0.11 -1.48 5.45 -104.63 -0.57 -2.05 16 27 C 0.10 1.42 5.25 -3.60 -0.02 1.40 16 28 C 0.05 0.84 4.98 -3.71 -0.02 0.82 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 32 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16 33 H 0.04 0.88 7.04 -51.93 -0.37 0.51 16 34 H 0.09 1.44 7.04 -51.93 -0.37 1.07 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.36 4.53 7.90 -39.30 -0.31 4.22 16 37 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.13 2.14 3.64 -52.49 -0.19 1.95 16 45 H 0.08 0.95 5.01 -51.93 -0.26 0.69 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.04 0.87 4.98 -51.93 -0.26 0.61 16 48 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -30.35 365.55 -11.57 -41.93 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.99 Total: 7.03 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -3.57 Total: -5.63 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -1.59 Total: -54.65 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.35 -11.57 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317085329.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.692 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds