Wall clock time and date at job start Tue Mar 31 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81395 * 102.99974 * 2 1 4 4 H 1.09000 * 110.28046 * 55.62986 * 3 2 1 5 5 C 1.53996 * 110.30766 * 293.54047 * 3 2 1 6 6 N 1.47902 * 107.06057 * 242.31243 * 5 3 2 7 7 C 1.46906 * 110.99946 * 214.15550 * 6 5 3 8 8 H 1.08995 * 109.46956 * 299.87595 * 7 6 5 9 9 C 1.52995 * 109.46979 * 179.87440 * 7 6 5 10 10 C 1.50703 * 109.46808 * 59.87292 * 7 6 5 11 11 O 1.21282 * 119.99973 * 9.78141 * 10 7 6 12 12 N 1.34776 * 119.99900 * 189.77457 * 10 7 6 13 13 C 1.46504 * 119.99722 * 5.30336 * 12 10 7 14 14 C 1.46500 * 120.00296 * 185.30481 * 12 10 7 15 15 C 1.50694 * 109.47381 * 89.99975 * 14 12 10 16 16 H 1.08002 * 119.99673 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00277 * 180.02562 * 15 14 12 18 18 N 1.31518 * 119.99591 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00134 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47206 * 90.00302 * 19 17 15 21 21 H 1.48508 * 109.46827 * 210.00152 * 19 17 15 22 22 H 1.48501 * 109.46995 * 330.00011 * 19 17 15 23 23 C 1.48531 * 105.81814 * 334.66762 * 6 5 3 24 24 C 1.54598 * 110.30838 * 177.83088 * 3 2 1 25 25 H 1.09003 * 110.72345 * 22.51193 * 24 3 2 26 26 N 1.46896 * 110.72155 * 259.40988 * 24 3 2 27 27 C 1.46898 * 111.00462 * 64.89203 * 26 24 3 28 28 C 1.46900 * 110.99883 * 188.84955 * 26 24 3 29 29 H 1.08993 * 109.47293 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47174 * 300.00574 * 1 2 3 31 31 H 1.09006 * 109.46457 * 60.00025 * 1 2 3 32 32 H 1.09003 * 109.91834 * 122.95522 * 5 3 2 33 33 H 1.09005 * 109.91663 * 1.66505 * 5 3 2 34 34 H 1.08998 * 109.47376 * 175.19374 * 9 7 6 35 35 H 1.09009 * 109.46956 * 295.19291 * 9 7 6 36 36 H 1.09000 * 109.47276 * 55.19317 * 9 7 6 37 37 H 1.09001 * 109.47276 * 95.21016 * 13 12 10 38 38 H 1.08999 * 109.47257 * 215.20352 * 13 12 10 39 39 H 1.09004 * 109.47440 * 335.20938 * 13 12 10 40 40 H 1.09000 * 109.47090 * 210.00339 * 14 12 10 41 41 H 1.09004 * 109.46582 * 329.99932 * 14 12 10 42 42 H 0.96997 * 119.99513 * 179.97438 * 18 17 15 43 43 H 1.09003 * 110.66330 * 157.64109 * 23 6 5 44 44 H 1.08988 * 110.67104 * 280.77201 * 23 6 5 45 45 H 1.09003 * 109.46969 * 59.99884 * 27 26 24 46 46 H 1.09003 * 109.47093 * 180.02562 * 27 26 24 47 47 H 1.08993 * 109.47016 * 300.00189 * 27 26 24 48 48 H 1.09003 * 109.47311 * 55.12395 * 28 26 24 49 49 H 1.09002 * 109.47233 * 175.12176 * 28 26 24 50 50 H 1.08999 * 109.46993 * 295.12086 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7447 2.2654 0.8439 5 6 1.7803 2.4180 -1.3240 6 7 3.0016 2.9230 -1.9881 7 6 2.7244 4.1609 -2.7290 8 1 1.9692 3.9670 -3.4907 9 6 4.0092 4.6532 -3.3981 10 6 2.2186 5.2136 -1.7767 11 8 2.2669 5.0224 -0.5800 12 7 1.7128 6.3678 -2.2548 13 6 1.5469 6.5522 -3.6987 14 6 1.3289 7.4378 -1.3307 15 6 2.5085 8.3456 -1.0954 16 1 3.4499 8.1457 -1.5856 17 6 2.3859 9.4313 -0.2545 18 7 1.2396 9.6743 0.3427 19 14 3.8479 10.5570 0.0366 20 1 3.8394 11.6495 -0.9692 21 1 3.7609 11.1388 1.4002 22 1 5.1056 9.7776 -0.0897 23 6 3.9844 3.1623 -0.9005 24 6 3.7545 1.9644 0.0549 25 1 4.2708 1.0761 -0.3091 26 7 4.1878 2.2925 1.4196 27 6 3.9380 1.1713 2.3353 28 6 5.6031 2.6855 1.4423 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 1.0985 3.2442 -1.1225 33 1 1.2927 1.6768 -1.9574 34 1 3.7865 5.5227 -4.0167 35 1 4.7351 4.9280 -2.6328 36 1 4.4212 3.8598 -4.0216 37 1 0.5269 6.2938 -3.9832 38 1 1.7435 7.5928 -3.9570 39 1 2.2467 5.9074 -4.2302 40 1 0.5084 8.0122 -1.7608 41 1 1.0105 7.0027 -0.3833 42 1 1.1535 10.4379 0.9346 43 1 5.0015 3.1523 -1.2922 44 1 3.7755 4.1042 -0.3936 45 1 4.4890 0.2946 1.9949 46 1 4.2676 1.4413 3.3386 47 1 2.8716 0.9465 2.3518 48 1 5.7635 3.5066 0.7436 49 1 5.8751 3.0059 2.4481 50 1 6.2209 1.8356 1.1523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330504861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:57 Heat of formation + Delta-G solvation = 5.803133 kcal Electronic energy + Delta-G solvation = -28388.962066 eV Core-core repulsion = 24771.804551 eV Total energy + Delta-G solvation = -3617.157515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.44651 -38.30932 -36.10831 -34.85979 -33.14310 -32.30458 -29.48340 -28.80940 -28.50430 -27.70440 -26.99570 -26.01977 -24.24386 -23.33923 -22.20623 -20.86225 -20.14590 -18.43171 -17.01681 -16.57797 -16.49055 -16.23864 -15.56540 -15.09942 -14.80181 -14.49852 -14.46374 -14.18062 -13.90736 -13.75120 -13.60727 -13.35914 -13.27074 -12.96012 -12.66673 -12.43720 -12.20955 -12.16044 -12.02493 -11.97185 -11.75961 -11.54929 -11.36058 -11.23513 -11.10269 -10.97489 -10.87040 -10.73030 -10.65755 -10.58989 -10.17283 -9.89507 -9.67791 -9.49508 -8.46971 -8.26699 -7.82491 -7.70309 -7.65340 -6.07784 -4.12933 1.66133 2.51856 3.25172 3.27392 3.34506 3.38761 3.78512 3.93283 4.29317 4.41307 4.51827 4.68739 5.01982 5.05868 5.06589 5.21139 5.22984 5.26771 5.29140 5.33347 5.40966 5.44185 5.51927 5.57336 5.59997 5.62438 5.70643 5.77825 5.87632 5.88952 5.92985 5.98374 5.99895 6.04906 6.08261 6.14793 6.32249 6.49074 6.84346 6.95245 7.04160 7.13841 7.19630 7.41180 7.49937 7.88132 8.19310 8.35291 8.84341 9.00854 9.52426 11.00282 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.003908 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.979923 B = 7163.386360 C = 7863.237085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.263 6.263 3 C -0.044 4.044 4 H 0.105 0.895 5 C 0.045 3.955 6 N -0.487 5.487 7 C 0.050 3.950 8 H 0.099 0.901 9 C -0.141 4.141 10 C 0.478 3.522 11 O -0.531 6.531 12 N -0.597 5.597 13 C 0.072 3.928 14 C 0.244 3.756 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.017 3.983 24 C 0.112 3.888 25 H 0.056 0.944 26 N -0.533 5.533 27 C 0.024 3.976 28 C 0.026 3.974 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.030 0.970 41 H 0.044 0.956 42 H 0.263 0.737 43 H 0.071 0.929 44 H 0.119 0.881 45 H 0.024 0.976 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 -16.985 -4.955 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.036 6.036 3 C -0.174 4.174 4 H 0.123 0.877 5 C -0.085 4.085 6 N -0.210 5.210 7 C -0.063 4.063 8 H 0.117 0.883 9 C -0.199 4.199 10 C 0.263 3.737 11 O -0.410 6.410 12 N -0.328 5.328 13 C -0.072 4.072 14 C 0.125 3.875 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.111 4.111 24 C 0.002 3.998 25 H 0.073 0.927 26 N -0.257 5.257 27 C -0.125 4.125 28 C -0.122 4.122 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.137 0.863 45 H 0.042 0.958 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.812 -17.809 -4.411 18.561 hybrid contribution -0.038 1.728 0.435 1.782 sum 2.774 -16.082 -3.976 16.796 Atomic orbital electron populations 1.23371 0.94491 1.06023 1.05142 1.86664 1.07212 1.11964 1.97722 1.24019 0.99699 0.92197 1.01472 0.87707 1.23206 0.93539 0.99300 0.92499 1.65212 1.08473 1.24275 1.23024 1.21985 0.99347 0.88749 0.96203 0.88280 1.21838 0.95807 1.01385 1.00848 1.21439 0.78799 0.83580 0.89847 1.90579 1.55592 1.78627 1.16164 1.48268 1.61217 1.16159 1.07167 1.21881 1.00239 1.03063 0.82057 1.19282 0.95698 0.83623 0.88938 1.21391 0.97529 1.09884 1.27698 0.92531 1.24927 0.96036 0.97640 0.95389 1.69933 1.24207 1.28984 1.30141 0.86514 0.82833 0.80620 0.77565 1.20642 1.21065 1.19880 1.23865 0.95562 1.00700 0.90973 1.22199 0.91752 0.97130 0.88734 0.92668 1.61961 1.19450 1.37373 1.06898 1.22467 1.02461 0.91271 0.96277 1.22385 0.87089 0.99900 1.02858 0.88403 0.90521 0.90465 0.91817 0.90264 0.90904 0.92005 0.91077 0.93697 0.90891 0.91376 0.95225 0.93805 0.92706 0.91043 0.86325 0.95770 0.91653 0.90685 0.90897 0.91271 0.95947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.58 101.05 1.07 -0.11 16 2 S -0.26 -3.26 20.27 -107.50 -2.18 -5.44 16 3 C -0.04 -0.64 2.35 -25.37 -0.06 -0.70 16 4 H 0.10 1.72 7.92 -51.93 -0.41 1.31 16 5 C 0.04 0.66 5.60 -2.75 -0.02 0.65 16 6 N -0.49 -7.26 5.30 -223.88 -1.19 -8.45 16 7 C 0.05 0.75 2.00 -68.86 -0.14 0.61 16 8 H 0.10 1.30 7.49 -51.93 -0.39 0.91 16 9 C -0.14 -1.85 8.66 37.16 0.32 -1.53 16 10 C 0.48 9.34 5.77 -10.98 -0.06 9.27 16 11 O -0.53 -12.24 11.41 5.56 0.06 -12.17 16 12 N -0.60 -12.14 2.86 -182.95 -0.52 -12.66 16 13 C 0.07 1.09 9.96 59.85 0.60 1.69 16 14 C 0.24 6.26 5.23 -5.20 -0.03 6.23 16 15 C -0.53 -14.60 9.39 -34.44 -0.32 -14.93 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 19 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.02 0.27 3.34 -1.90 -0.01 0.26 16 24 C 0.11 1.64 2.32 -65.85 -0.15 1.49 16 25 H 0.06 0.82 7.82 -51.93 -0.41 0.41 16 26 N -0.53 -7.73 4.86 -240.93 -1.17 -8.90 16 27 C 0.02 0.29 9.12 60.06 0.55 0.84 16 28 C 0.03 0.33 9.40 60.06 0.56 0.89 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.72 7.72 -51.92 -0.40 0.32 16 32 H 0.06 1.09 5.94 -51.93 -0.31 0.78 16 33 H 0.08 1.06 7.15 -51.93 -0.37 0.69 16 34 H 0.07 0.89 5.73 -51.93 -0.30 0.60 16 35 H 0.06 0.90 7.25 -51.92 -0.38 0.53 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 39 H 0.07 0.84 4.14 -51.93 -0.21 0.62 16 40 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 1.04 7.54 -51.93 -0.39 0.65 16 44 H 0.12 2.34 4.81 -52.21 -0.25 2.09 16 45 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.96 6.48 -51.93 -0.34 0.62 16 48 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -31.46 389.55 -9.85 -41.31 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.65 Total: 3.16 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 2.22 Total: 6.32 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -2.14 Total: -55.64 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.06 Total: -12.17 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.18 Total: -5.44 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.46 -9.85 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330504861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.112 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds