Wall clock time and date at job start Tue Mar 31 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81397 * 102.99835 * 2 1 4 4 H 1.09000 * 110.29374 * 52.86924 * 3 2 1 5 5 C 1.54383 * 110.32225 * 290.63537 * 3 2 1 6 6 N 1.48566 * 104.59471 * 217.25253 * 5 3 2 7 7 C 1.46902 * 111.00052 * 159.03875 * 6 5 3 8 8 H 1.09003 * 109.47036 * 295.07398 * 7 6 5 9 9 C 1.53000 * 109.47033 * 55.07080 * 7 6 5 10 10 C 1.50695 * 109.47170 * 175.07311 * 7 6 5 11 11 O 1.21282 * 119.99963 * 359.97438 * 10 7 6 12 12 N 1.34778 * 120.00066 * 180.02562 * 10 7 6 13 13 C 1.46502 * 119.99781 * 0.02562 * 12 10 7 14 14 C 1.46502 * 119.99994 * 179.97438 * 12 10 7 15 15 C 1.50703 * 109.46965 * 89.99791 * 14 12 10 16 16 H 1.07999 * 119.99865 * 0.02562 * 15 14 12 17 17 C 1.37877 * 119.99549 * 179.97438 * 15 14 12 18 18 N 1.31507 * 120.00654 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99289 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46681 * 90.00578 * 19 17 15 21 21 H 1.48504 * 109.46847 * 210.00042 * 19 17 15 22 22 H 1.48493 * 109.47538 * 330.00305 * 19 17 15 23 23 C 1.48566 * 104.21960 * 39.48321 * 6 5 3 24 24 C 1.54265 * 110.32476 * 174.99848 * 3 2 1 25 25 H 1.09000 * 110.32298 * 359.97438 * 24 3 2 26 26 N 1.46896 * 110.32282 * 237.88992 * 24 3 2 27 27 C 1.46904 * 110.99832 * 174.99747 * 26 24 3 28 28 C 1.46897 * 111.00381 * 298.95246 * 26 24 3 29 29 H 1.08993 * 109.47142 * 299.99975 * 1 2 3 30 30 H 1.08997 * 109.46858 * 60.00655 * 1 2 3 31 31 H 1.09001 * 109.46594 * 180.02562 * 1 2 3 32 32 H 1.09000 * 110.40919 * 336.02553 * 5 3 2 33 33 H 1.08997 * 110.41554 * 98.47621 * 5 3 2 34 34 H 1.08997 * 109.47155 * 186.84464 * 9 7 6 35 35 H 1.08999 * 109.47401 * 306.84393 * 9 7 6 36 36 H 1.08994 * 109.47048 * 66.84169 * 9 7 6 37 37 H 1.08997 * 109.47323 * 89.99954 * 13 12 10 38 38 H 1.08999 * 109.46398 * 210.00052 * 13 12 10 39 39 H 1.08996 * 109.46939 * 329.99500 * 13 12 10 40 40 H 1.08997 * 109.47253 * 210.00006 * 14 12 10 41 41 H 1.09006 * 109.46831 * 330.00306 * 14 12 10 42 42 H 0.96999 * 120.00683 * 179.97438 * 18 17 15 43 43 H 1.09004 * 110.40576 * 201.73661 * 23 6 5 44 44 H 1.08994 * 110.40831 * 79.29790 * 23 6 5 45 45 H 1.09002 * 109.46844 * 60.00266 * 27 26 24 46 46 H 1.08999 * 109.46808 * 180.02562 * 27 26 24 47 47 H 1.09002 * 109.47034 * 300.00163 * 27 26 24 48 48 H 1.09003 * 109.47099 * 60.00333 * 28 26 24 49 49 H 1.08991 * 109.47220 * 179.97438 * 28 26 24 50 50 H 1.08998 * 109.47182 * 300.00582 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7058 2.2747 0.8151 5 6 1.8455 2.4047 -1.3548 6 7 2.9257 3.3902 -1.6181 7 6 3.0012 3.7190 -3.0479 8 1 3.2935 2.8319 -3.6098 9 6 1.6330 4.2021 -3.5331 10 6 4.0223 4.8068 -3.2598 11 8 4.6271 5.2636 -2.3130 12 7 4.2626 5.2729 -4.5014 13 6 3.5308 4.7223 -5.6449 14 6 5.2549 6.3309 -4.7074 15 6 6.6068 5.7111 -4.9509 16 1 6.7158 4.6366 -4.9526 17 6 7.7041 6.5159 -5.1727 18 7 7.5713 7.8242 -5.1712 19 14 9.3798 5.7475 -5.4753 20 1 9.5640 5.5193 -6.9311 21 1 10.4402 6.6614 -4.9795 22 1 9.4673 4.4513 -4.7561 23 6 4.1632 2.7055 -1.1632 24 6 3.7467 1.9655 0.1261 25 1 4.2499 1.0005 0.1885 26 7 4.0594 2.7798 1.3080 27 6 5.5112 2.8789 1.5099 28 6 3.4501 4.1125 1.2054 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8231 1.6470 -2.1381 33 1 0.8812 2.9077 -1.2835 34 1 1.6556 4.3300 -4.6153 35 1 0.8734 3.4659 -3.2701 36 1 1.3951 5.1546 -3.0595 37 1 2.6182 5.2969 -5.8030 38 1 4.1548 4.7786 -6.5368 39 1 3.2750 3.6817 -5.4455 40 1 4.9703 6.9329 -5.5703 41 1 5.2998 6.9643 -3.8214 42 1 8.3434 8.3904 -5.3268 43 1 4.9438 3.4351 -0.9475 44 1 4.5033 1.9950 -1.9164 45 1 5.9688 3.3417 0.6356 46 1 5.7147 3.4867 2.3916 47 1 5.9270 1.8815 1.6527 48 1 2.3675 4.0119 1.1268 49 1 3.6969 4.6942 2.0934 50 1 3.8330 4.6199 0.3200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330504863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:05 Heat of formation + Delta-G solvation = 2.081253 kcal Electronic energy + Delta-G solvation = -28140.579275 eV Core-core repulsion = 24523.260367 eV Total energy + Delta-G solvation = -3617.318908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29972 -38.70103 -36.01399 -34.85421 -33.05908 -32.23094 -29.83000 -29.01929 -28.27959 -27.46977 -27.24374 -26.10179 -24.21794 -23.68919 -22.53157 -20.82844 -19.73811 -18.55407 -17.06457 -16.85913 -16.50626 -16.07738 -15.74769 -15.11972 -14.94242 -14.60326 -14.55513 -14.38885 -13.94073 -13.80663 -13.57919 -13.33393 -13.13971 -12.83377 -12.68634 -12.35234 -12.24903 -12.15568 -12.04680 -11.92059 -11.69904 -11.65386 -11.51618 -11.40954 -11.21295 -11.17416 -11.03450 -11.02423 -10.83686 -10.59131 -10.17358 -10.08217 -9.64916 -8.92653 -8.46276 -8.40052 -8.19951 -7.84257 -7.64724 -6.06780 -4.11814 1.44759 2.32021 3.27452 3.34135 3.37020 3.43385 3.67503 3.94168 4.15994 4.34337 4.43010 4.59374 4.87384 4.88826 4.97002 4.99970 5.09251 5.18652 5.20232 5.20894 5.27757 5.38590 5.41069 5.47602 5.56480 5.58979 5.63105 5.67442 5.70798 5.76808 5.80958 5.87991 5.92018 5.99737 6.07662 6.19222 6.26086 6.41773 6.72740 6.83044 7.06339 7.08741 7.11860 7.42561 7.52832 7.89691 8.20912 8.40799 8.88060 9.10433 9.53563 11.01160 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.003508 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.035768 B = 7980.436685 C = 8856.188136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.251 6.251 3 C -0.051 4.051 4 H 0.107 0.893 5 C 0.035 3.965 6 N -0.476 5.476 7 C 0.053 3.947 8 H 0.062 0.938 9 C -0.152 4.152 10 C 0.513 3.487 11 O -0.525 6.525 12 N -0.602 5.602 13 C 0.082 3.918 14 C 0.248 3.752 15 C -0.526 4.526 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.004 3.996 24 C 0.105 3.895 25 H 0.094 0.906 26 N -0.532 5.532 27 C 0.020 3.980 28 C 0.018 3.982 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.263 0.737 43 H 0.107 0.893 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.338 -13.319 7.664 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.024 6.024 3 C -0.180 4.180 4 H 0.125 0.875 5 C -0.095 4.095 6 N -0.201 5.201 7 C -0.060 4.060 8 H 0.080 0.920 9 C -0.209 4.209 10 C 0.298 3.702 11 O -0.400 6.400 12 N -0.335 5.335 13 C -0.062 4.062 14 C 0.129 3.871 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.125 4.125 24 C -0.006 4.006 25 H 0.111 0.889 26 N -0.255 5.255 27 C -0.128 4.128 28 C -0.129 4.129 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.125 0.875 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.521 -13.484 8.848 21.702 hybrid contribution 0.576 0.253 -1.549 1.672 sum -13.946 -13.231 7.299 20.562 Atomic orbital electron populations 1.23368 0.94492 1.06279 1.04960 1.86857 1.07097 1.10640 1.97781 1.24025 1.00029 0.93123 1.00833 0.87461 1.23596 0.96794 0.94237 0.94871 1.65331 1.03020 1.36358 1.15375 1.21831 0.96799 0.97871 0.89459 0.92014 1.22050 0.94213 1.02289 1.02350 1.19961 0.83157 0.83619 0.83435 1.90631 1.50104 1.58789 1.40525 1.48101 1.40554 1.39700 1.05173 1.21778 0.96231 0.97320 0.90891 1.19262 0.85162 0.84937 0.97764 1.21418 0.92990 0.93222 1.48891 0.92627 1.24927 0.99080 0.94768 0.95264 1.69925 1.30817 1.03025 1.49541 0.86519 0.83582 0.79184 0.78269 1.20622 1.21035 1.19946 1.23875 0.94578 0.97773 0.96318 1.22213 0.92254 0.97129 0.89024 0.88852 1.62316 1.11552 1.15389 1.36234 1.22408 0.87347 1.01829 1.01241 1.22464 0.99716 0.88941 1.01820 0.90467 0.90525 0.88273 0.92402 0.89735 0.90497 0.92127 0.91387 0.93461 0.90877 0.92571 0.95088 0.93853 0.92694 0.87480 0.93598 0.94442 0.91238 0.91697 0.91906 0.92435 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.69 101.05 1.08 0.21 16 2 S -0.25 -2.60 21.39 -107.50 -2.30 -4.90 16 3 C -0.05 -0.56 2.72 -25.34 -0.07 -0.63 16 4 H 0.11 1.21 6.51 -51.93 -0.34 0.87 16 5 C 0.04 0.39 4.62 -2.18 -0.01 0.38 16 6 N -0.48 -6.78 3.76 -223.39 -0.84 -7.62 16 7 C 0.05 0.79 1.49 -68.87 -0.10 0.69 16 8 H 0.06 0.89 7.15 -51.93 -0.37 0.52 16 9 C -0.15 -1.80 8.66 37.16 0.32 -1.48 16 10 C 0.51 10.46 6.87 -10.99 -0.08 10.39 16 11 O -0.52 -12.80 14.39 5.56 0.08 -12.72 16 12 N -0.60 -12.57 2.86 -182.95 -0.52 -13.09 16 13 C 0.08 1.27 8.79 59.85 0.53 1.79 16 14 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 15 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 16 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 19 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.00 0.07 4.38 -2.18 -0.01 0.06 16 24 C 0.10 1.33 2.85 -66.33 -0.19 1.15 16 25 H 0.09 1.21 7.62 -51.93 -0.40 0.81 16 26 N -0.53 -6.92 4.98 -241.50 -1.20 -8.13 16 27 C 0.02 0.25 9.39 60.07 0.56 0.81 16 28 C 0.02 0.25 8.44 60.06 0.51 0.76 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 33 H 0.08 0.83 7.52 -51.93 -0.39 0.44 16 34 H 0.08 0.83 4.74 -51.93 -0.25 0.59 16 35 H 0.06 0.58 6.48 -51.93 -0.34 0.24 16 36 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 37 H 0.05 0.62 7.10 -51.93 -0.37 0.25 16 38 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 39 H 0.06 0.72 5.93 -51.93 -0.31 0.41 16 40 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 41 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 43 H 0.11 1.96 4.44 -51.93 -0.23 1.73 16 44 H 0.05 0.70 7.83 -51.93 -0.41 0.29 16 45 H 0.04 0.53 6.52 -51.93 -0.34 0.20 16 46 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.06 0.80 6.41 -51.93 -0.33 0.47 16 49 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 50 H 0.06 1.06 6.19 -51.93 -0.32 0.74 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -32.09 389.17 -9.62 -41.71 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.51 Total: 0.85 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 2.10 Total: 7.02 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -1.83 Total: -54.61 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.30 Total: -4.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.09 -9.62 -41.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330504863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.791 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds