Wall clock time and date at job start Tue Mar 31 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31452 * 125.50481 * 2 1 4 4 N 1.39932 * 108.84684 * 180.02562 * 3 2 1 5 5 C 1.36567 * 132.58445 * 180.02562 * 4 3 2 6 6 C 1.35511 * 119.11446 * 179.97438 * 5 4 3 7 7 S 1.76201 * 120.26545 * 180.02562 * 6 5 4 8 8 O 1.42099 * 106.39949 * 203.54367 * 7 6 5 9 9 O 1.42105 * 106.40199 * 336.46091 * 7 6 5 10 10 N 1.65598 * 107.21757 * 90.00448 * 7 6 5 11 11 C 1.46501 * 119.99490 * 269.99662 * 10 7 6 12 12 C 1.36933 * 120.00187 * 90.00203 * 10 7 6 13 13 H 1.08001 * 119.99884 * 20.60577 * 12 10 7 14 14 C 1.38814 * 119.99958 * 200.61732 * 12 10 7 15 15 N 1.31618 * 120.00240 * 14.75484 * 14 12 10 16 16 Si 1.86798 * 119.99935 * 194.75883 * 14 12 10 17 17 H 1.48499 * 109.47249 * 85.00524 * 16 14 12 18 18 H 1.48501 * 109.47234 * 205.00416 * 16 14 12 19 19 H 1.48505 * 109.47076 * 325.00328 * 16 14 12 20 20 C 1.40273 * 119.46458 * 0.02562 * 6 5 4 21 21 N 1.31201 * 120.29478 * 359.97438 * 20 6 5 22 22 C 1.33975 * 120.81476 * 0.02562 * 21 20 6 23 23 C 1.38688 * 125.49933 * 179.97438 * 2 1 3 24 24 Cl 1.73600 * 126.17710 * 0.02562 * 23 2 1 25 25 H 1.08996 * 109.47606 * 90.02103 * 1 2 3 26 26 H 1.09001 * 109.47293 * 210.02667 * 1 2 3 27 27 H 1.09005 * 109.46832 * 330.02381 * 1 2 3 28 28 H 1.08001 * 120.44589 * 0.24165 * 5 4 3 29 29 H 1.09004 * 109.46933 * 95.00723 * 11 10 7 30 30 H 1.09010 * 109.46730 * 214.99965 * 11 10 7 31 31 H 1.08998 * 109.47659 * 335.00044 * 11 10 7 32 32 H 0.96996 * 120.00656 * 179.97438 * 15 14 12 33 33 H 1.07999 * 119.84985 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2704 1.0701 0.0000 4 7 3.6110 0.6690 -0.0006 5 6 4.7846 1.3674 -0.0004 6 6 5.9566 0.6872 -0.0006 7 16 7.4886 1.5577 0.0003 8 8 8.4549 0.6698 -0.5446 9 8 7.2201 2.8430 -0.5433 10 7 7.9144 1.7987 1.5824 11 6 7.4760 3.0084 2.2828 12 6 8.6764 0.8673 2.2358 13 1 9.2716 0.1645 1.6716 14 6 8.6837 0.8263 3.6233 15 7 7.7591 1.4681 4.3056 16 14 10.0059 -0.1397 4.5222 17 1 11.2149 0.7074 4.6829 18 1 9.5019 -0.5419 5.8600 19 1 10.3519 -1.3527 3.7384 20 6 5.9404 -0.7154 -0.0016 21 7 4.7999 -1.3641 -0.0018 22 6 3.6345 -0.7033 -0.0016 23 6 2.3123 -1.1291 0.0005 24 17 1.7665 -2.7771 0.0006 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8903 0.5135 28 1 4.7787 2.4474 0.0043 29 1 6.5591 2.7975 2.8332 30 1 8.2524 3.3269 2.9786 31 1 7.2905 3.8010 1.5578 32 1 7.7639 1.4392 5.2751 33 1 6.8708 -1.2638 -0.0022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330811124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:25 Heat of formation + Delta-G solvation = 47.475051 kcal Electronic energy + Delta-G solvation = -23798.905805 eV Core-core repulsion = 20015.506195 eV Total energy + Delta-G solvation = -3783.399610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.034 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21687 -38.07526 -36.30952 -36.05779 -36.01947 -34.60603 -33.89887 -32.05889 -31.86402 -29.16407 -28.15881 -26.79012 -24.38514 -23.81783 -22.96697 -20.77197 -18.80754 -18.12271 -17.81136 -17.16355 -16.81456 -16.44965 -16.09312 -15.29134 -14.92722 -14.47959 -14.13217 -13.66757 -13.53468 -13.41030 -13.28960 -12.98883 -12.63468 -12.21019 -12.16182 -12.04937 -11.70580 -11.59493 -11.32260 -11.20608 -10.93062 -10.89185 -10.82788 -10.63754 -10.49100 -10.48071 -10.34995 -9.66527 -9.54877 -9.42590 -8.45739 -7.77132 -6.94427 -4.32874 0.63078 0.77235 1.38009 1.83427 2.37598 2.65315 2.95498 3.00182 3.03481 3.42491 3.72350 3.90264 4.15129 4.19193 4.44968 4.68540 4.81489 4.87029 5.02206 5.16468 5.31266 5.40986 5.54845 5.69523 5.87355 6.11693 6.14233 6.23147 6.40256 6.58026 6.79215 6.89522 7.11256 7.36537 7.70650 7.91673 8.24928 8.73090 9.98873 Molecular weight = 330.03amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004238 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.610757 B = 6605.518079 C = 7214.850525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.134 3.866 3 N -0.310 5.310 4 N -0.312 5.312 5 C 0.257 3.743 6 C -0.743 4.743 7 S 2.489 3.511 8 O -0.976 6.976 9 O -0.998 6.998 10 N -0.783 5.783 11 C 0.112 3.888 12 C -0.220 4.220 13 H 0.127 0.873 14 C 0.030 3.970 15 N -0.813 5.813 16 Si 0.936 3.064 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.258 1.258 20 C 0.263 3.737 21 N -0.478 5.478 22 C 0.293 3.707 23 C -0.203 4.203 24 Cl -0.029 7.029 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.191 0.809 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.283 0.717 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 -1.826 -1.325 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.026 4.026 3 N -0.135 5.135 4 N -0.081 5.081 5 C 0.120 3.880 6 C -0.820 4.820 7 S 2.583 3.417 8 O -0.965 6.965 9 O -0.987 6.987 10 N -0.605 5.605 11 C -0.034 4.034 12 C -0.374 4.374 13 H 0.144 0.856 14 C -0.186 4.186 15 N -0.452 5.452 16 Si 0.760 3.240 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.182 1.182 20 C 0.079 3.921 21 N -0.190 5.190 22 C 0.064 3.936 23 C -0.243 4.243 24 Cl -0.001 7.001 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.208 0.792 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.715 -1.238 -2.229 8.126 hybrid contribution -0.195 -0.989 0.836 1.310 sum -7.910 -2.227 -1.393 8.335 Atomic orbital electron populations 1.20324 0.85039 1.04214 1.03842 1.22163 0.97560 0.88397 0.94519 1.77916 0.82637 1.20476 1.32422 1.47014 1.06509 1.07383 1.47201 1.21859 0.79767 0.99297 0.87033 1.33903 1.23730 1.08779 1.15627 1.15010 0.74278 0.73419 0.78970 1.93336 1.57945 1.65752 1.79474 1.93322 1.85453 1.39871 1.80057 1.54850 1.49005 1.22757 1.33874 1.21480 1.01617 0.84383 0.95930 1.20406 1.12205 1.14575 0.90200 0.85572 1.25972 0.98124 0.96986 0.97535 1.70097 1.29831 1.36115 1.09189 0.85750 0.79683 0.80047 0.78550 1.19238 1.20293 1.18222 1.23113 0.96222 0.90020 0.82730 1.68323 0.95998 1.36715 1.17966 1.20212 0.94184 0.80808 0.98429 1.19608 0.88879 0.87656 1.28167 1.98285 1.88750 1.15190 1.97851 0.89516 0.89561 0.89926 0.79228 0.92665 0.90316 0.92947 0.90667 0.79081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.28 36.00 0.37 -0.42 16 2 C 0.13 2.09 7.16 -82.59 -0.59 1.50 16 3 N -0.31 -5.53 12.66 33.53 0.42 -5.10 16 4 N -0.31 -6.02 3.91 -12.16 -0.05 -6.06 16 5 C 0.26 4.80 10.78 -16.42 -0.18 4.62 16 6 C -0.74 -14.41 5.95 -39.79 -0.24 -14.64 16 7 S 2.49 51.95 5.66 -107.50 -0.61 51.34 16 8 O -0.98 -22.14 16.12 -57.17 -0.92 -23.06 16 9 O -1.00 -22.06 15.84 -57.17 -0.91 -22.96 16 10 N -0.78 -16.60 3.31 -66.68 -0.22 -16.83 16 11 C 0.11 2.20 8.94 59.85 0.53 2.74 16 12 C -0.22 -4.77 9.45 -15.06 -0.14 -4.91 16 13 H 0.13 2.66 7.16 -52.49 -0.38 2.29 16 14 C 0.03 0.62 5.07 -17.43 -0.09 0.54 16 15 N -0.81 -17.63 10.67 55.49 0.59 -17.04 16 16 Si 0.94 16.51 29.58 -169.99 -5.03 11.48 16 17 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 18 H -0.28 -4.93 7.11 56.52 0.40 -4.53 16 19 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 20 C 0.26 4.99 10.77 -17.06 -0.18 4.81 16 21 N -0.48 -9.45 10.48 -12.18 -0.13 -9.58 16 22 C 0.29 5.76 7.92 -155.43 -1.23 4.53 16 23 C -0.20 -3.52 6.73 -39.17 -0.26 -3.78 16 24 Cl -0.03 -0.43 28.94 -51.86 -1.50 -1.93 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.09 0.79 7.94 -51.93 -0.41 0.37 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.19 3.13 7.62 -52.49 -0.40 2.73 16 29 H 0.05 1.11 7.40 -51.93 -0.38 0.72 16 30 H 0.08 1.56 7.22 -51.92 -0.37 1.18 16 31 H 0.05 0.95 6.91 -51.93 -0.36 0.59 16 32 H 0.28 5.74 8.31 -40.82 -0.34 5.40 16 33 H 0.19 3.23 7.67 -52.49 -0.40 2.83 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -27.85 318.04 -8.25 -36.10 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -2.69 Total: 3.87 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.01 Total: -5.02 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.62 Total: -54.61 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.83 Total: -46.02 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Atomic # 16 Polarization: 51.95 SS G_CDS: -0.61 Total: 51.34 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.93 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.85 -8.25 -36.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330811124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.574 kcal (2) G-P(sol) polarization free energy of solvation -27.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds