Wall clock time and date at job start Tue Mar 31 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34223 * 117.00753 * 2 1 4 4 O 1.20832 * 119.99746 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00536 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46965 * 179.97438 * 5 3 2 7 7 C 1.36937 * 120.00014 * 273.69984 * 6 5 3 8 8 H 1.08002 * 119.99910 * 180.61754 * 7 6 5 9 9 C 1.38807 * 119.99717 * 0.62019 * 7 6 5 10 10 N 1.31621 * 120.00217 * 27.42638 * 9 7 6 11 11 Si 1.86806 * 119.99839 * 207.41931 * 9 7 6 12 12 H 1.48509 * 109.46535 * 84.99346 * 11 9 7 13 13 H 1.48502 * 109.47306 * 204.98852 * 11 9 7 14 14 H 1.48494 * 109.47336 * 324.99626 * 11 9 7 15 15 S 1.65602 * 120.00069 * 93.70937 * 6 5 3 16 16 O 1.42097 * 106.40340 * 156.45358 * 15 6 5 17 17 O 1.42107 * 106.40080 * 23.53206 * 15 6 5 18 18 C 1.76198 * 107.21480 * 269.99599 * 15 6 5 19 19 C 1.38261 * 120.38862 * 269.72173 * 18 15 6 20 20 N 1.31846 * 120.88410 * 179.69998 * 19 18 15 21 21 C 1.31845 * 121.78286 * 0.59420 * 20 19 18 22 22 C 1.38703 * 120.68127 * 359.69258 * 21 20 19 23 23 O 1.35913 * 120.47152 * 180.02562 * 22 21 20 24 24 C 1.42903 * 117.00101 * 359.97438 * 23 22 21 25 25 C 1.38536 * 120.39284 * 89.99799 * 18 15 6 26 26 H 1.08993 * 109.47919 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47090 * 300.00522 * 1 2 3 28 28 H 1.09005 * 109.46934 * 60.00071 * 1 2 3 29 29 H 1.08997 * 109.47219 * 59.99187 * 5 3 2 30 30 H 1.09007 * 109.46274 * 299.99512 * 5 3 2 31 31 H 0.97009 * 119.99780 * 180.02562 * 10 9 7 32 32 H 1.07996 * 119.55480 * 359.97438 * 19 18 15 33 33 H 1.08002 * 119.65624 * 179.72384 * 21 20 19 34 34 H 1.08997 * 109.46950 * 59.99764 * 24 23 22 35 35 H 1.08998 * 109.47214 * 179.97438 * 24 23 22 36 36 H 1.08998 * 109.46707 * 299.99659 * 24 23 22 37 37 H 1.08006 * 120.81008 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.1021 3.3575 -1.1847 8 1 4.4180 4.3903 -1.1858 9 6 3.8181 2.7174 -2.3832 10 7 2.9604 1.7193 -2.4090 11 14 4.6529 3.2725 -3.9594 12 1 5.9745 2.6060 -4.0806 13 1 3.8059 2.9076 -5.1233 14 1 4.8422 4.7450 -3.9272 15 16 4.3061 3.4476 1.4298 16 8 5.1737 4.5287 1.1172 17 8 4.6376 2.4304 2.3651 18 6 2.7977 4.1658 1.9896 19 6 2.4574 5.4542 1.6211 20 7 1.3284 5.9991 2.0296 21 6 0.4867 5.3504 2.8099 22 6 0.7615 4.0562 3.2263 23 8 -0.1095 3.3912 4.0302 24 6 -1.2978 4.0858 4.4141 25 6 1.9415 3.4483 2.8089 26 1 -0.3635 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.9558 0.7806 -0.8907 30 1 3.9564 0.7804 0.8893 31 1 2.7622 1.2717 -3.2465 32 1 3.1232 6.0202 0.9866 33 1 -0.4265 5.8315 3.1277 34 1 -1.8666 4.3525 3.5234 35 1 -1.9039 3.4434 5.0529 36 1 -1.0296 4.9912 4.9586 37 1 2.1837 2.4415 3.1158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337315337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:15 Heat of formation + Delta-G solvation = -129.915124 kcal Electronic energy + Delta-G solvation = -27890.483841 eV Core-core repulsion = 23762.223194 eV Total energy + Delta-G solvation = -4128.260646 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.19032 -39.38592 -37.77546 -36.35613 -36.00737 -34.93632 -34.57618 -32.04926 -31.82483 -30.09363 -28.49423 -27.45317 -26.43463 -24.16548 -23.36857 -22.76263 -20.41329 -18.87583 -18.30972 -17.24978 -16.88744 -16.76068 -16.67099 -16.25360 -15.74338 -15.64368 -15.40505 -15.26044 -14.70284 -14.48419 -13.98714 -13.41911 -13.29883 -12.90043 -12.81055 -12.70805 -12.40538 -12.05760 -11.82451 -11.80627 -11.43294 -11.40281 -11.20891 -11.04644 -10.88126 -10.76333 -10.55936 -10.44877 -10.30844 -10.13676 -9.96396 -9.48201 -9.18972 -9.01432 -8.49597 -8.17252 -6.90368 -4.10088 1.14031 1.56788 1.69933 3.02380 3.08681 3.13669 3.31676 3.41244 3.55699 3.85307 4.02215 4.28665 4.51079 4.74618 4.88591 4.95169 5.06641 5.09098 5.34268 5.38633 5.43981 5.56740 5.60019 5.67412 5.80483 5.93436 6.01580 6.11633 6.26215 6.32809 6.45472 6.75084 6.81971 7.07775 7.35096 7.41651 7.93553 8.24445 8.34695 8.73888 8.92469 10.10587 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.006128 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.463813 B = 4567.923834 C = 5440.883419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.371 6.371 3 C 0.471 3.529 4 O -0.500 6.500 5 C 0.136 3.864 6 N -0.773 5.773 7 C -0.221 4.221 8 H 0.130 0.870 9 C 0.028 3.972 10 N -0.830 5.830 11 Si 0.943 3.057 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.262 1.262 15 S 2.523 3.477 16 O -0.974 6.974 17 O -0.993 6.993 18 C -0.658 4.658 19 C 0.153 3.847 20 N -0.470 5.470 21 C 0.042 3.958 22 C 0.050 3.950 23 O -0.314 6.314 24 C 0.026 3.974 25 C -0.010 4.010 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.142 0.858 30 H 0.099 0.901 31 H 0.283 0.717 32 H 0.166 0.834 33 H 0.152 0.848 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 -1.853 4.038 7.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.288 6.288 3 C 0.311 3.689 4 O -0.386 6.386 5 C 0.007 3.993 6 N -0.594 5.594 7 C -0.370 4.370 8 H 0.148 0.852 9 C -0.184 4.184 10 N -0.471 5.471 11 Si 0.768 3.232 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.186 1.186 15 S 2.620 3.380 16 O -0.964 6.964 17 O -0.982 6.982 18 C -0.736 4.736 19 C -0.006 4.006 20 N -0.179 5.179 21 C -0.116 4.116 22 C 0.002 3.998 23 O -0.227 6.227 24 C -0.069 4.069 25 C -0.037 4.037 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.160 0.840 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.183 0.817 33 H 0.169 0.831 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.671 -0.896 4.546 7.323 hybrid contribution -1.321 -0.175 -0.516 1.429 sum -6.992 -1.071 4.030 8.141 Atomic orbital electron populations 1.22949 0.78745 1.01914 1.01598 1.86485 1.21626 1.35357 1.85330 1.24485 0.92707 0.80863 0.70876 1.90576 1.66552 1.36147 1.45275 1.21429 0.86822 0.85262 1.05761 1.56160 1.70523 1.13758 1.18961 1.20396 1.34224 1.00645 0.81737 0.85214 1.25620 0.95512 0.96861 1.00371 1.69955 1.26386 1.21520 1.29242 0.85642 0.79126 0.80003 0.78460 1.19293 1.20655 1.18558 1.12399 0.78306 0.73076 0.74186 1.93369 1.64778 1.54717 1.83526 1.93356 1.84494 1.57350 1.63039 1.33375 1.27878 1.05505 1.06812 1.22264 0.92251 0.91204 0.94836 1.67532 1.03479 1.37150 1.09771 1.22847 0.99808 0.91335 0.97629 1.20025 0.91847 0.93230 0.94670 1.86065 1.30958 1.42041 1.63643 1.23036 0.85587 0.98155 1.00151 1.20399 0.90052 0.99607 0.93646 0.89558 0.93182 0.92627 0.84049 0.88364 0.90640 0.81662 0.83126 0.92693 0.88247 0.92773 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.56 101.05 1.07 1.75 16 2 O -0.37 -7.24 10.56 -39.24 -0.41 -7.66 16 3 C 0.47 10.31 6.07 36.01 0.22 10.53 16 4 O -0.50 -12.12 15.03 -18.76 -0.28 -12.40 16 5 C 0.14 2.88 5.53 -5.19 -0.03 2.86 16 6 N -0.77 -17.62 2.43 -61.09 -0.15 -17.77 16 7 C -0.22 -5.13 9.38 -15.06 -0.14 -5.27 16 8 H 0.13 2.96 7.30 -52.49 -0.38 2.57 16 9 C 0.03 0.63 4.96 -17.43 -0.09 0.54 16 10 N -0.83 -18.75 8.97 55.49 0.50 -18.25 16 11 Si 0.94 17.57 29.63 -169.99 -5.04 12.53 16 12 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 13 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 14 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 15 S 2.52 57.67 5.67 -107.50 -0.61 57.06 16 16 O -0.97 -23.70 16.11 -57.17 -0.92 -24.62 16 17 O -0.99 -23.44 15.92 -57.17 -0.91 -24.35 16 18 C -0.66 -14.42 5.50 -39.46 -0.22 -14.64 16 19 C 0.15 3.27 10.68 -17.54 -0.19 3.09 16 20 N -0.47 -9.52 10.36 -13.13 -0.14 -9.66 16 21 C 0.04 0.75 10.22 -17.37 -0.18 0.57 16 22 C 0.05 0.93 6.71 -39.08 -0.26 0.67 16 23 O -0.31 -5.09 10.51 -19.47 -0.20 -5.29 16 24 C 0.03 0.28 9.82 101.05 0.99 1.27 16 25 C -0.01 -0.20 9.10 -39.14 -0.36 -0.55 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.80 8.13 -51.93 -0.42 0.37 16 28 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.14 2.96 6.08 -51.93 -0.32 2.64 16 30 H 0.10 1.91 6.94 -51.93 -0.36 1.55 16 31 H 0.28 6.01 8.31 -40.82 -0.34 5.67 16 32 H 0.17 3.34 7.62 -52.49 -0.40 2.94 16 33 H 0.15 2.12 6.32 -52.49 -0.33 1.79 16 34 H 0.05 0.55 7.68 -51.93 -0.40 0.16 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 37 H 0.14 2.84 7.71 -52.48 -0.40 2.44 16 LS Contribution 333.25 15.07 5.02 5.02 Total: -1.00 -30.48 333.25 -6.14 -36.62 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -3.82 Total: 7.94 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 0.82 Total: 0.81 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.21 Total: -45.67 kcal Atomic # 8 Polarization: -71.59 SS G_CDS: -2.73 Total: -74.32 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.04 Total: 12.53 kcal Atomic # 16 Polarization: 57.67 SS G_CDS: -0.61 Total: 57.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.48 -6.14 -36.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337315337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.291 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds