Wall clock time and date at job start Tue Mar 31 2020 06:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47449 * 2 1 4 4 C 1.34948 * 126.03634 * 124.99973 * 3 2 1 5 5 C 1.35312 * 107.74525 * 180.02562 * 4 3 2 6 6 S 1.76200 * 126.04091 * 180.02562 * 5 4 3 7 7 O 1.42101 * 106.40103 * 1.29489 * 6 5 4 8 8 O 1.42103 * 106.40284 * 228.37587 * 6 5 4 9 9 N 1.65595 * 107.21787 * 114.83467 * 6 5 4 10 10 C 1.36945 * 119.99803 * 102.34723 * 9 6 5 11 11 H 1.07993 * 119.99645 * 229.13397 * 10 9 6 12 12 C 1.38807 * 119.99842 * 49.13370 * 10 9 6 13 13 N 1.31625 * 119.99682 * 203.21280 * 12 10 9 14 14 Si 1.86800 * 120.00410 * 23.21942 * 12 10 9 15 15 H 1.48507 * 109.46830 * 265.50632 * 14 12 10 16 16 H 1.48504 * 109.46987 * 25.50242 * 14 12 10 17 17 H 1.48500 * 109.47383 * 145.50818 * 14 12 10 18 18 C 1.46496 * 120.00576 * 282.34387 * 9 6 5 19 19 C 1.52997 * 117.50200 * 193.35065 * 18 9 6 20 20 C 1.53000 * 117.50169 * 124.68475 * 18 9 6 21 21 C 1.39868 * 107.92092 * 0.26336 * 5 4 3 22 22 N 1.48020 * 125.90184 * 179.73556 * 21 5 4 23 23 O 1.21799 * 119.99665 * 351.19549 * 22 21 5 24 24 O 1.21798 * 120.00240 * 171.18816 * 22 21 5 25 25 N 1.30840 * 108.20303 * 359.55260 * 21 5 4 26 26 H 1.08998 * 109.46829 * 59.99618 * 1 2 3 27 27 H 1.08996 * 109.47647 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46925 * 300.00676 * 1 2 3 29 29 H 1.09003 * 109.46925 * 239.99324 * 2 1 3 30 30 H 1.08998 * 109.46829 * 120.00382 * 2 1 3 31 31 H 1.08002 * 126.12630 * 0.06053 * 4 3 2 32 32 H 0.97005 * 119.99705 * 179.97438 * 13 12 10 33 33 H 1.09003 * 115.54417 * 339.02175 * 18 9 6 34 34 H 1.08998 * 117.50206 * 359.97438 * 19 18 9 35 35 H 1.09003 * 117.50109 * 145.02186 * 19 18 9 36 36 H 1.08996 * 117.50189 * 214.98619 * 20 18 9 37 37 H 1.09002 * 117.49690 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8732 1.9210 0.8939 5 6 3.0714 3.2136 0.5464 6 16 4.1045 4.3666 1.3877 7 8 4.6981 3.6596 2.4681 8 8 3.3309 5.5457 1.5622 9 7 5.3370 4.7643 0.3558 10 6 5.3101 5.9579 -0.3150 11 1 5.4849 5.9825 -1.3804 12 6 5.0582 7.1360 0.3744 13 7 4.5844 8.1844 -0.2651 14 14 5.3916 7.2338 2.2098 15 1 4.1434 6.9335 2.9563 16 1 6.4375 6.2452 2.5762 17 1 5.8589 8.6001 2.5560 18 6 6.4563 3.8395 0.1605 19 6 7.7023 4.3775 -0.5458 20 6 6.7709 3.4036 -1.2720 21 6 2.3071 3.4743 -0.5956 22 7 2.2250 4.7691 -1.3082 23 8 2.7282 5.7654 -0.8207 24 8 1.6544 4.8382 -2.3820 25 7 1.6802 2.3749 -0.9276 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8900 29 1 1.8933 -0.5140 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.3196 1.4122 1.7355 32 1 4.4080 9.0075 0.2168 33 1 6.6043 3.1066 0.9536 34 1 7.6892 5.4194 -0.8656 35 1 8.6701 3.9982 -0.2177 36 1 7.1262 2.3841 -1.4212 37 1 6.1448 3.8046 -2.0690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339049488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:07 Heat of formation + Delta-G solvation = 72.176451 kcal Electronic energy + Delta-G solvation = -28363.627280 eV Core-core repulsion = 24276.422733 eV Total energy + Delta-G solvation = -4087.204547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85011 -40.81464 -37.40220 -35.96844 -35.57645 -34.87392 -34.48963 -33.33751 -31.24459 -31.03709 -29.92580 -26.65107 -24.88120 -23.57698 -21.88046 -21.69892 -20.93872 -20.54547 -19.15928 -18.80388 -17.70762 -17.24651 -16.90027 -16.56761 -16.03783 -15.79222 -15.57768 -15.03605 -14.47637 -14.21337 -13.89836 -13.75724 -13.35585 -13.00427 -12.90757 -12.54113 -12.05390 -11.80873 -11.56960 -11.52033 -11.39489 -10.99912 -10.81050 -10.79320 -10.65302 -10.47317 -10.39294 -10.29859 -10.20365 -10.00308 -9.91635 -9.66768 -9.36889 -9.16987 -8.67085 -7.78595 -6.58026 -4.15722 0.68031 1.22727 1.47139 1.71349 2.54343 2.54846 3.31314 3.45837 3.57518 4.04454 4.08175 4.34344 4.42452 4.51719 4.53873 4.75069 4.80802 4.91805 5.06528 5.16133 5.20463 5.37899 5.52215 5.58652 5.60015 5.66405 5.74019 5.96925 6.17429 6.21729 6.53021 6.57978 6.86921 6.91660 7.04534 7.10025 7.67024 8.08928 8.46022 8.87198 9.01104 10.41567 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.006418 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.219780 B = 4361.485261 C = 4687.097630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.345 5.345 4 C 0.151 3.849 5 C -0.735 4.735 6 S 2.489 3.511 7 O -1.007 7.007 8 O -0.936 6.936 9 N -0.791 5.791 10 C -0.223 4.223 11 H 0.096 0.904 12 C 0.108 3.892 13 N -0.772 5.772 14 Si 0.835 3.165 15 H -0.233 1.233 16 H -0.254 1.254 17 H -0.279 1.279 18 C 0.091 3.909 19 C -0.161 4.161 20 C -0.209 4.209 21 C 0.202 3.798 22 N 0.024 4.976 23 O 0.008 5.992 24 O -0.198 6.198 25 N -0.225 5.225 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.202 0.798 32 H 0.286 0.714 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.546 -14.092 0.869 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.002 3.998 3 N -0.131 5.131 4 C 0.003 3.997 5 C -0.821 4.821 6 S 2.591 3.409 7 O -0.997 6.997 8 O -0.924 6.924 9 N -0.611 5.611 10 C -0.379 4.379 11 H 0.114 0.886 12 C -0.114 4.114 13 N -0.406 5.406 14 Si 0.658 3.342 15 H -0.157 1.157 16 H -0.177 1.177 17 H -0.205 1.205 18 C -0.018 4.018 19 C -0.201 4.201 20 C -0.249 4.249 21 C -0.044 4.044 22 N 0.551 4.449 23 O -0.233 6.233 24 O -0.393 6.393 25 N -0.055 5.055 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.219 0.781 32 H 0.097 0.903 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.984 -15.390 1.222 15.565 hybrid contribution 0.014 0.131 0.665 0.678 sum -1.970 -15.259 1.887 15.501 Atomic orbital electron populations 1.22108 0.93117 1.03402 1.04109 1.22021 0.96774 0.76120 1.04896 1.49268 1.34157 1.09907 1.19764 1.22626 0.90777 0.91987 0.94273 1.33083 1.23753 1.13482 1.11732 1.14297 0.73902 0.73426 0.79266 1.93303 1.76009 1.75025 1.55347 1.93477 1.69855 1.43996 1.85062 1.52905 1.23116 1.20807 1.64285 1.18882 1.44311 0.79971 0.94730 0.88614 1.25627 0.91806 0.94581 0.99373 1.69813 1.28562 1.03384 1.38793 0.87487 0.80832 0.79675 0.86176 1.15667 1.17737 1.20547 1.21409 0.90114 0.95970 0.94296 1.23192 0.92861 1.00873 1.03133 1.23314 1.05030 0.98868 0.97641 1.22308 1.00073 0.87652 0.94395 1.42491 1.01090 1.00469 1.00888 1.95029 1.40330 1.20268 1.67698 1.94503 1.44863 1.91419 1.08475 1.77172 1.20756 0.95572 1.12006 0.90755 0.90020 0.91742 0.88715 0.87383 0.78111 0.90328 0.86043 0.86735 0.89393 0.89753 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.10 37.16 0.38 -1.02 16 2 C 0.12 1.06 7.23 -4.04 -0.03 1.03 16 3 N -0.34 -5.09 3.68 -61.37 -0.23 -5.31 16 4 C 0.15 2.43 11.07 -17.22 -0.19 2.24 16 5 C -0.73 -15.36 6.14 -40.01 -0.25 -15.61 16 6 S 2.49 59.68 3.65 -107.50 -0.39 59.29 16 7 O -1.01 -24.29 16.85 -57.17 -0.96 -25.25 16 8 O -0.94 -25.30 10.24 -66.37 -0.68 -25.98 16 9 N -0.79 -18.10 2.55 -53.43 -0.14 -18.23 16 10 C -0.22 -5.48 5.54 -15.06 -0.08 -5.57 16 11 H 0.10 2.42 7.95 -52.49 -0.42 2.00 16 12 C 0.11 2.81 3.94 -17.43 -0.07 2.74 16 13 N -0.77 -20.32 13.97 55.49 0.78 -19.55 16 14 Si 0.83 20.80 25.09 -169.99 -4.27 16.54 16 15 H -0.23 -6.16 6.06 56.52 0.34 -5.82 16 16 H -0.25 -6.18 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.09 1.73 6.44 -67.93 -0.44 1.29 16 19 C -0.16 -2.66 9.86 -26.69 -0.26 -2.93 16 20 C -0.21 -3.43 10.18 -26.69 -0.27 -3.70 16 21 C 0.20 4.46 8.14 -146.41 -1.19 3.27 16 22 N 0.02 0.57 4.45 33.02 0.15 0.72 16 23 O 0.01 0.22 12.85 -36.57 -0.47 -0.25 16 24 O -0.20 -4.74 19.24 -29.46 -0.57 -5.30 16 25 N -0.23 -4.33 12.39 33.02 0.41 -3.92 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.11 0.57 8.07 -51.93 -0.42 0.15 16 31 H 0.20 2.43 8.06 -52.49 -0.42 2.00 16 32 H 0.29 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.12 2.13 7.56 -51.93 -0.39 1.74 16 34 H 0.11 2.05 7.15 -51.93 -0.37 1.68 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.69 8.06 -51.93 -0.42 1.27 16 LS Contribution 327.87 15.07 4.94 4.94 Total: -1.00 -32.49 327.87 -8.01 -40.49 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -4.17 Total: 0.07 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.41 Total: -18.25 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.97 Total: -46.29 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -2.68 Total: -56.79 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.27 Total: 16.54 kcal Atomic # 16 Polarization: 59.68 SS G_CDS: -0.39 Total: 59.29 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.49 -8.01 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339049488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.670 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds