Wall clock time and date at job start Tue Mar 31 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34779 * 119.99915 * 2 1 4 4 O 1.21583 * 119.99823 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99962 * 180.02562 * 3 2 1 6 6 C 1.46492 * 120.00063 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.47441 * 180.02562 * 6 5 3 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 6 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31807 * 120.00163 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99537 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47241 * 90.00370 * 20 18 16 22 22 H 1.48510 * 109.47200 * 210.00213 * 20 18 16 23 23 H 1.48497 * 109.47709 * 330.00146 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 1.08998 * 109.47081 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46653 * 299.99822 * 1 2 3 27 27 H 1.09002 * 109.46872 * 59.99834 * 1 2 3 28 28 H 0.96996 * 120.00329 * 180.02562 * 2 1 3 29 29 H 0.97003 * 119.99587 * 0.02562 * 5 3 2 30 30 H 1.08998 * 109.47276 * 59.99919 * 6 5 3 31 31 H 1.09002 * 109.47526 * 300.00230 * 6 5 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 33 33 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 34 34 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 35 35 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 36 36 H 0.96999 * 119.99661 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4359 -0.0011 7 6 5.7008 2.1606 -0.0022 8 8 6.1051 1.0170 -0.0021 9 7 6.5766 3.1850 -0.0024 10 6 7.9421 2.9312 -0.0093 11 7 8.8752 3.8356 -0.0153 12 6 10.1212 3.4125 -0.0208 13 6 11.2921 4.3611 -0.0286 14 6 10.2803 2.0754 -0.0200 15 16 11.8192 1.2172 -0.0271 16 6 11.2413 -0.4473 -0.0214 17 1 10.1806 -0.6506 -0.0157 18 6 12.1468 -1.4944 -0.0241 19 7 11.7145 -2.7396 -0.0193 20 14 13.9813 -1.1426 -0.0347 21 1 14.4750 -1.0467 1.3625 22 1 14.6921 -2.2416 -0.7365 23 1 14.2354 0.1400 -0.7386 24 16 8.6820 1.3327 -0.0035 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.9501 -0.8400 -0.0004 29 1 3.9717 0.3271 -0.0013 30 1 3.9562 3.0077 0.8888 31 1 3.9555 3.0074 -0.8911 32 1 6.2533 4.0995 -0.0021 33 1 11.5800 4.5915 0.9972 34 1 12.1320 3.8976 -0.5462 35 1 11.0114 5.2806 -0.5423 36 1 12.3490 -3.4732 -0.0216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341107994.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:39 Heat of formation + Delta-G solvation = -20.793915 kcal Electronic energy + Delta-G solvation = -22317.511594 eV Core-core repulsion = 18669.028420 eV Total energy + Delta-G solvation = -3648.483173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.061 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70476 -39.80792 -38.69956 -35.18882 -34.91793 -34.57428 -32.80862 -30.87659 -28.90877 -27.21909 -26.22178 -25.94867 -23.50783 -21.37516 -21.12722 -20.05223 -19.10468 -18.21043 -17.65766 -16.76317 -16.54259 -16.41541 -15.81995 -15.50060 -15.33162 -14.92977 -14.57101 -14.37434 -14.21121 -13.61139 -13.57284 -13.26982 -12.82775 -12.79996 -12.54392 -12.19658 -12.05723 -11.62594 -11.40349 -11.35136 -10.96632 -10.73695 -10.59462 -10.18996 -10.08764 -9.66949 -9.53279 -9.24320 -9.20403 -8.92733 -8.84331 -7.96472 -6.79571 -6.60974 -4.34320 1.19999 1.70008 2.15962 2.22784 2.39832 2.73861 2.90219 2.91190 3.06753 3.16185 3.32532 3.45600 3.98000 3.98821 4.29071 4.42904 4.79303 4.87767 4.97546 4.99448 5.05204 5.22726 5.47567 5.81137 5.95566 5.99764 6.08660 6.11254 6.27524 6.32154 6.57310 6.78214 6.96859 7.61903 7.66726 7.73685 8.17845 8.27556 8.35092 8.78782 10.46831 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.002867 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.014314 B = 9764.923654 C =11401.156869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.749 5.749 3 C 0.708 3.292 4 O -0.593 6.593 5 N -0.735 5.735 6 C 0.132 3.868 7 C 0.501 3.499 8 O -0.501 6.501 9 N -0.609 5.609 10 C 0.188 3.812 11 N -0.477 5.477 12 C 0.031 3.969 13 C -0.064 4.064 14 C -0.237 4.237 15 S 0.058 5.942 16 C -0.546 4.546 17 H 0.105 0.895 18 C 0.102 3.898 19 N -0.856 5.856 20 Si 0.852 3.148 21 H -0.261 1.261 22 H -0.265 1.265 23 H -0.236 1.236 24 S 0.233 5.767 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.401 0.599 29 H 0.411 0.589 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.419 0.581 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.446 7.415 -0.048 16.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.404 5.404 3 C 0.408 3.592 4 O -0.471 6.471 5 N -0.395 5.395 6 C 0.004 3.996 7 C 0.286 3.714 8 O -0.375 6.375 9 N -0.258 5.258 10 C -0.182 4.182 11 N -0.198 5.198 12 C -0.111 4.111 13 C -0.123 4.123 14 C -0.474 4.474 15 S 0.306 5.694 16 C -0.694 4.694 17 H 0.122 0.878 18 C -0.110 4.110 19 N -0.490 5.490 20 Si 0.676 3.324 21 H -0.185 1.185 22 H -0.189 1.189 23 H -0.160 1.160 24 S 0.478 5.522 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.235 0.765 29 H 0.249 0.751 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.257 0.743 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.039 7.124 -0.042 15.743 hybrid contribution 0.401 -0.334 0.015 0.522 sum -13.638 6.790 -0.027 15.235 Atomic orbital electron populations 1.21413 0.77867 1.02124 1.02307 1.44878 1.07867 1.07212 1.80491 1.15776 0.81193 0.84469 0.77790 1.90936 1.67905 1.30252 1.58023 1.44713 1.04821 1.09545 1.80409 1.20707 0.86153 0.87253 1.05528 1.20741 0.88779 0.84952 0.76973 1.90726 1.78388 1.20679 1.47739 1.42206 1.01754 1.10845 1.71037 1.23914 0.87553 0.95734 1.11030 1.65848 0.99264 1.35814 1.18874 1.19113 0.90785 0.90579 1.10655 1.20156 0.93265 0.96926 1.01978 1.28189 1.05455 1.00749 1.12969 1.82492 1.00393 1.02103 1.84400 1.22662 0.98313 0.88586 1.59856 0.87757 1.24744 0.99539 0.94112 0.92564 1.70003 1.35909 0.98305 1.44735 0.86814 0.84290 0.80914 0.80420 1.18515 1.18939 1.15988 1.86115 0.92535 1.02412 1.71130 0.90532 0.92307 0.92300 0.76537 0.75105 0.87702 0.87713 0.74338 0.91649 0.91063 0.91645 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 10.70 59.85 0.64 1.33 16 2 N -0.75 -5.96 5.72 -72.07 -0.41 -6.37 16 3 C 0.71 7.88 8.57 -86.92 -0.74 7.13 16 4 O -0.59 -8.58 16.34 5.29 0.09 -8.49 16 5 N -0.74 -7.39 5.53 -66.42 -0.37 -7.76 16 6 C 0.13 1.23 6.15 -5.20 -0.03 1.20 16 7 C 0.50 6.25 7.86 -10.98 -0.09 6.17 16 8 O -0.50 -8.08 13.19 5.55 0.07 -8.00 16 9 N -0.61 -7.88 5.40 -11.78 -0.06 -7.94 16 10 C 0.19 3.35 8.40 -87.19 -0.73 2.62 16 11 N -0.48 -8.92 10.55 -9.78 -0.10 -9.03 16 12 C 0.03 0.61 6.73 -83.96 -0.57 0.04 16 13 C -0.06 -1.02 10.02 36.00 0.36 -0.66 16 14 C -0.24 -5.19 6.67 29.47 0.20 -5.00 16 15 S 0.06 1.36 18.70 -107.50 -2.01 -0.65 16 16 C -0.55 -14.81 9.80 30.81 0.30 -14.51 16 17 H 0.10 3.03 6.21 -52.49 -0.33 2.70 16 18 C 0.10 2.76 5.49 -17.49 -0.10 2.66 16 19 N -0.86 -24.19 13.98 55.47 0.78 -23.41 16 20 Si 0.85 19.27 27.73 -169.99 -4.71 14.56 16 21 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.24 -5.10 6.73 56.52 0.38 -4.72 16 24 S 0.23 4.91 18.35 -107.50 -1.97 2.94 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.40 2.24 8.84 -40.82 -0.36 1.88 16 29 H 0.41 4.01 7.45 -40.82 -0.30 3.71 16 30 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.42 3.90 8.82 -40.82 -0.36 3.54 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.13 7.37 -51.93 -0.38 0.75 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.28 7.19 8.32 -40.82 -0.34 6.85 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -34.26 340.85 -8.18 -42.43 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -3.85 Total: 5.62 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.76 Total: 0.98 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.17 Total: -54.51 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.16 Total: -16.50 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.56 kcal Atomic # 16 Polarization: 6.27 SS G_CDS: -3.98 Total: 2.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.26 -8.18 -42.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341107994.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.640 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds