Wall clock time and date at job start Tue Mar 31 2020 05:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47099 * 2 1 4 4 C 1.52993 * 109.47326 * 239.99393 * 2 1 3 5 5 N 1.46504 * 109.47366 * 60.00340 * 4 2 1 6 6 C 1.34776 * 120.00448 * 180.27747 * 5 4 2 7 7 O 1.21585 * 119.99688 * 359.71888 * 6 5 4 8 8 N 1.34779 * 119.99920 * 179.72518 * 6 5 4 9 9 C 1.46500 * 119.99830 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.46969 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46862 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46961 * 179.97438 * 11 10 9 13 13 H 1.07992 * 119.99976 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99673 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99817 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00227 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47195 * 89.99743 * 16 14 12 18 18 H 1.48498 * 109.46956 * 209.99393 * 16 14 12 19 19 H 1.48503 * 109.47080 * 329.99601 * 16 14 12 20 20 C 1.53001 * 109.46748 * 119.99819 * 2 1 3 21 21 N 1.46904 * 109.47154 * 305.75045 * 20 2 1 22 22 C 1.47019 * 111.00244 * 285.72174 * 21 20 2 23 23 C 1.53089 * 109.25854 * 177.60631 * 22 21 20 24 24 O 1.43015 * 109.26007 * 56.85047 * 23 22 21 25 25 C 1.43013 * 113.73813 * 301.32641 * 24 23 22 26 26 C 1.47017 * 111.00114 * 162.08530 * 21 20 2 27 27 H 1.09002 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47466 * 300.00606 * 1 2 3 29 29 H 1.09000 * 109.46915 * 60.00212 * 1 2 3 30 30 H 0.96707 * 113.99633 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47371 * 300.00323 * 4 2 1 32 32 H 1.09004 * 109.47332 * 180.02562 * 4 2 1 33 33 H 0.97003 * 119.99464 * 359.97438 * 5 4 2 34 34 H 0.96993 * 120.00053 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.46601 * 300.00079 * 9 8 6 36 36 H 1.09004 * 109.47174 * 59.99526 * 9 8 6 37 37 H 1.09005 * 109.46971 * 299.99712 * 10 9 8 38 38 H 1.08998 * 109.47423 * 60.00043 * 10 9 8 39 39 H 1.09005 * 109.46864 * 299.99498 * 11 10 9 40 40 H 1.08998 * 109.47295 * 59.99685 * 11 10 9 41 41 H 0.96991 * 120.00343 * 180.02562 * 15 14 12 42 42 H 1.08994 * 109.47573 * 65.74860 * 20 2 1 43 43 H 1.09000 * 109.46925 * 185.75582 * 20 2 1 44 44 H 1.08996 * 109.50232 * 297.54170 * 22 21 20 45 45 H 1.09003 * 109.50335 * 57.66856 * 22 21 20 46 46 H 1.09004 * 109.50685 * 296.91058 * 23 22 21 47 47 H 1.09001 * 109.54116 * 176.80477 * 23 22 21 48 48 H 1.09005 * 109.51052 * 298.73917 * 25 24 23 49 49 H 1.08999 * 109.54586 * 178.63087 * 25 24 23 50 50 H 1.08997 * 109.50471 * 302.32662 * 26 21 20 51 51 H 1.08993 * 109.50586 * 62.46080 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.5518 -0.0308 -2.4454 6 6 1.8728 -0.4946 -3.6695 7 8 2.5718 -1.4832 -3.7809 8 7 1.4190 0.1375 -4.7699 9 6 1.7684 -0.3664 -6.1005 10 6 1.1312 0.5261 -7.1673 11 6 1.4956 -0.0004 -8.5568 12 6 0.8673 0.8783 -9.6077 13 1 0.2678 1.7272 -9.3138 14 6 1.0580 0.5986 -10.9442 15 7 0.5094 1.3651 -11.8613 16 14 2.0944 -0.8701 -11.4525 17 1 1.2262 -2.0680 -11.5809 18 1 2.7456 -0.5886 -12.7571 19 1 3.1354 -1.1212 -10.4236 20 6 2.0399 -0.7212 1.2493 21 7 1.4401 -0.1134 2.4447 22 6 2.0508 1.1921 2.7348 23 6 1.3574 1.8152 3.9491 24 8 1.4492 0.9162 5.0576 25 6 0.8637 -0.3648 4.8100 26 6 1.5521 -1.0102 3.6043 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.9704 1.4236 0.0004 31 1 1.6767 -1.7490 -1.2491 32 1 3.1300 -0.7217 -1.2489 33 1 0.9938 0.7576 -2.3565 34 1 0.8611 0.9259 -4.6810 35 1 2.8519 -0.3572 -6.2194 36 1 1.3994 -1.3860 -6.2114 37 1 0.0476 0.5174 -7.0484 38 1 1.5006 1.5456 -7.0562 39 1 2.5791 0.0080 -8.6759 40 1 1.1258 -1.0198 -8.6676 41 1 0.6432 1.1682 -12.8015 42 1 1.7631 -1.7742 1.1994 43 1 3.1250 -0.6329 1.3024 44 1 3.1109 1.0582 2.9500 45 1 1.9338 1.8483 1.8723 46 1 0.3087 1.9986 3.7151 47 1 1.8436 2.7571 4.2031 48 1 -0.1994 -0.2450 4.6009 49 1 0.9929 -1.0003 5.6861 50 1 1.0711 -1.9614 3.3766 51 1 2.6042 -1.1792 3.8334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341123206.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:03 Heat of formation + Delta-G solvation = -127.171873 kcal Electronic energy + Delta-G solvation = -28294.691955 eV Core-core repulsion = 24229.015339 eV Total energy + Delta-G solvation = -4065.676615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55310 -39.82664 -38.58184 -35.83412 -35.49281 -34.42765 -33.29465 -32.06872 -31.61751 -31.20956 -28.45882 -27.64802 -26.45912 -24.58065 -24.44425 -22.70513 -20.96872 -20.93874 -20.79989 -20.24457 -18.33595 -17.57061 -16.79183 -16.73947 -16.60642 -16.09666 -15.89199 -15.63715 -15.62041 -15.38752 -14.95972 -14.53290 -14.33901 -14.22247 -13.97417 -13.90203 -13.60505 -13.18472 -12.80798 -12.68798 -12.64985 -12.32728 -12.22335 -11.96166 -11.89094 -11.84193 -11.78448 -11.32076 -11.12287 -11.05941 -10.88593 -10.52299 -10.30797 -10.01701 -9.91918 -9.81386 -9.67273 -9.27904 -9.22222 -8.89761 -8.67370 -8.55023 -6.05927 -4.04573 2.65224 3.20489 3.29977 3.31701 3.39220 3.42687 3.43763 3.72108 4.18702 4.29278 4.36228 4.41956 4.44284 4.44914 4.54584 4.66137 4.69516 4.80175 4.95246 5.06237 5.08169 5.21381 5.28264 5.29290 5.31580 5.40000 5.45397 5.47889 5.55807 5.58579 5.64057 5.70038 5.95546 6.04406 6.30939 6.38654 6.41686 6.42135 6.47715 6.67413 6.70128 6.83023 6.99642 7.11551 7.24218 7.37472 7.76262 8.09477 8.50673 8.68733 8.97998 9.56386 11.07316 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.040542 B = 0.001607 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.482792 B =17417.838598 C =17751.815486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.128 3.872 3 O -0.549 6.549 4 C 0.117 3.883 5 N -0.743 5.743 6 C 0.700 3.300 7 O -0.597 6.597 8 N -0.741 5.741 9 C 0.133 3.867 10 C -0.113 4.113 11 C -0.011 4.011 12 C -0.522 4.522 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.032 3.968 21 N -0.525 5.525 22 C 0.002 3.998 23 C 0.063 3.937 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.015 3.985 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.376 0.624 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.396 0.604 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.036 0.964 45 H 0.119 0.881 46 H 0.059 0.941 47 H 0.096 0.904 48 H 0.060 0.940 49 H 0.096 0.904 50 H 0.086 0.914 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 -2.069 35.855 35.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 O -0.355 6.355 4 C -0.009 4.009 5 N -0.400 5.400 6 C 0.400 3.600 7 O -0.476 6.476 8 N -0.395 5.395 9 C 0.010 3.990 10 C -0.151 4.151 11 C -0.049 4.049 12 C -0.560 4.560 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.096 4.096 21 N -0.250 5.250 22 C -0.126 4.126 23 C -0.014 4.014 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.114 4.114 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.224 0.776 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.229 0.771 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.137 0.863 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.078 0.922 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.054 -2.725 35.621 35.740 hybrid contribution 1.403 -0.463 -0.487 1.556 sum 2.457 -3.187 35.133 35.363 Atomic orbital electron populations 1.21599 0.91153 1.02628 1.03119 1.21486 0.96441 0.82055 0.91348 1.86551 1.26806 1.25971 1.96217 1.21715 0.99172 0.96581 0.83448 1.44924 1.57616 1.33533 1.03948 1.15999 0.80512 0.83027 0.80455 1.90912 1.42947 1.27682 1.86042 1.45316 1.55944 1.32746 1.05500 1.21509 1.00092 0.98323 0.79094 1.21708 1.00043 0.98456 0.94908 1.19504 0.96964 0.96672 0.91762 1.21103 1.31927 1.13079 0.89897 0.91009 1.25027 0.95392 0.96411 0.96637 1.69910 1.44783 1.38795 1.00720 0.86776 0.81261 0.83231 0.78037 1.20255 1.21376 1.18880 1.22696 0.97142 0.99431 0.90380 1.62115 1.56490 1.03369 1.03010 1.23253 0.96322 0.92218 1.00802 1.22691 1.00647 0.92549 0.85480 1.87986 1.80419 1.24150 1.38198 1.22637 0.96976 0.84644 0.96985 1.22836 1.00086 0.96906 0.91523 0.91317 0.90308 0.92385 0.77642 0.90822 0.91675 0.76531 0.77106 0.92027 0.92002 0.92138 0.92113 0.96289 0.96719 0.92710 0.89431 0.93824 0.94550 0.86346 0.92256 0.88557 0.92212 0.88559 0.89579 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.45 37.16 0.31 -0.52 16 2 C 0.13 0.77 0.80 -90.62 -0.07 0.70 16 3 O -0.55 -3.26 9.72 -35.23 -0.34 -3.60 16 4 C 0.12 0.97 4.78 -4.04 -0.02 0.96 16 5 N -0.74 -7.48 5.15 -65.22 -0.34 -7.81 16 6 C 0.70 10.18 8.57 -86.92 -0.74 9.44 16 7 O -0.60 -11.21 16.34 5.29 0.09 -11.12 16 8 N -0.74 -10.29 5.56 -65.23 -0.36 -10.65 16 9 C 0.13 2.24 5.67 -4.05 -0.02 2.22 16 10 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 11 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 12 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 13 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 16 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 20 C 0.03 0.17 4.31 -3.82 -0.02 0.16 16 21 N -0.53 -3.10 3.66 -234.31 -0.86 -3.95 16 22 C 0.00 0.01 5.31 -3.71 -0.02 -0.01 16 23 C 0.06 0.40 7.01 37.20 0.26 0.66 16 24 O -0.39 -3.11 10.83 -35.23 -0.38 -3.49 16 25 C 0.06 0.37 7.01 37.21 0.26 0.63 16 26 C 0.01 0.08 5.61 -3.71 -0.02 0.06 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.57 7.45 -51.93 -0.39 0.18 16 29 H 0.06 0.40 6.86 -51.93 -0.36 0.04 16 30 H 0.38 1.41 9.05 45.56 0.41 1.83 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.40 3.32 7.21 -40.82 -0.29 3.02 16 34 H 0.40 4.43 8.49 -40.82 -0.35 4.08 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.09 0.44 7.89 -51.93 -0.41 0.03 16 43 H 0.04 0.23 8.02 -51.93 -0.42 -0.19 16 44 H 0.04 0.23 8.13 -51.93 -0.42 -0.19 16 45 H 0.12 0.70 5.26 -51.93 -0.27 0.43 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 0.37 8.03 -51.93 -0.42 -0.04 16 51 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -34.81 400.55 -9.15 -43.96 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.34 Total: 2.11 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.76 Total: -1.58 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.78 Total: -49.42 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.64 Total: -18.22 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.81 -9.15 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341123206.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.212 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds