Wall clock time and date at job start Tue Mar 31 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47228 * 2 1 4 4 C 1.53009 * 109.47024 * 119.99910 * 2 1 3 5 5 N 1.46500 * 109.46773 * 304.99422 * 4 2 1 6 6 C 1.34781 * 119.99963 * 180.02562 * 5 4 2 7 7 O 1.21584 * 119.99522 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00181 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99884 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46719 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.46560 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.46680 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00027 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99501 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00424 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99765 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47064 * 90.00117 * 16 14 12 18 18 H 1.48500 * 109.47504 * 210.00339 * 16 14 12 19 19 H 1.48504 * 109.47226 * 330.00689 * 16 14 12 20 20 C 1.53004 * 109.47155 * 239.99623 * 2 1 3 21 21 N 1.46897 * 109.46924 * 184.12660 * 20 2 1 22 22 C 1.47008 * 111.00042 * 277.44768 * 21 20 2 23 23 C 1.53108 * 109.25865 * 177.61144 * 22 21 20 24 24 O 1.43010 * 109.25625 * 56.84887 * 23 22 21 25 25 C 1.43015 * 113.73774 * 301.32599 * 24 23 22 26 26 C 1.47014 * 110.99838 * 153.81012 * 21 20 2 27 27 H 1.09001 * 109.47168 * 185.39807 * 1 2 3 28 28 H 1.08999 * 109.46914 * 305.39476 * 1 2 3 29 29 H 1.08997 * 109.46738 * 65.39380 * 1 2 3 30 30 H 0.96699 * 113.99965 * 163.33572 * 3 2 1 31 31 H 1.08994 * 109.47355 * 65.00088 * 4 2 1 32 32 H 1.09002 * 109.47052 * 185.00283 * 4 2 1 33 33 H 0.96998 * 120.00221 * 0.02562 * 5 4 2 34 34 H 0.97003 * 119.99529 * 359.97438 * 8 6 5 35 35 H 1.09002 * 109.47112 * 299.99699 * 9 8 6 36 36 H 1.08995 * 109.46915 * 59.99880 * 9 8 6 37 37 H 1.09002 * 109.47402 * 299.99913 * 10 9 8 38 38 H 1.09004 * 109.47026 * 60.00573 * 10 9 8 39 39 H 1.08997 * 109.47360 * 299.99601 * 11 10 9 40 40 H 1.08995 * 109.46959 * 60.00342 * 11 10 9 41 41 H 0.97003 * 120.00356 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.47141 * 304.12725 * 20 2 1 43 43 H 1.08996 * 109.47034 * 64.12674 * 20 2 1 44 44 H 1.09002 * 109.50516 * 297.54363 * 22 21 20 45 45 H 1.08999 * 109.51139 * 57.67741 * 22 21 20 46 46 H 1.09001 * 109.50348 * 296.90973 * 23 22 21 47 47 H 1.09003 * 109.54013 * 176.80678 * 23 22 21 48 48 H 1.08995 * 109.51134 * 298.73848 * 25 24 23 49 49 H 1.09007 * 109.54334 * 178.62946 * 25 24 23 50 50 H 1.08996 * 109.51229 * 302.32562 * 26 21 20 51 51 H 1.09006 * 109.50228 * 62.41534 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.4559 -0.1035 2.4424 6 6 1.7648 -0.5766 3.6661 7 8 2.5285 -1.5158 3.7797 8 7 1.2270 -0.0086 4.7636 9 6 1.5633 -0.5225 6.0937 10 6 0.8251 0.2931 7.1571 11 6 1.1757 -0.2441 8.5462 12 6 0.4481 0.5589 9.5936 13 1 -0.1998 1.3707 9.2981 14 6 0.6090 0.2563 10.9291 15 7 1.3977 -0.7326 11.2889 16 14 -0.2923 1.2520 12.2275 17 1 -1.6124 0.6292 12.5009 18 1 0.5106 1.2789 13.4764 19 1 -0.4917 2.6395 11.7372 20 6 2.0400 -0.7213 -1.2492 21 7 3.5056 -0.8082 -1.2004 22 6 4.1234 0.4376 -1.6772 23 6 5.6454 0.3261 -1.5536 24 8 6.0956 -0.8165 -2.2863 25 6 5.5144 -2.0474 -1.8477 26 6 3.9911 -1.9600 -1.9743 27 1 -0.3633 -1.0231 0.0967 28 1 -0.3633 0.5952 0.8377 29 1 -0.3633 0.4279 -0.9343 30 1 2.9353 1.4360 0.2533 31 1 1.7517 -1.7715 1.2057 32 1 3.1263 -0.6443 1.2953 33 1 0.8469 0.6460 2.3517 34 1 0.6180 0.7409 4.6729 35 1 1.2646 -1.5684 6.1653 36 1 2.6382 -0.4398 6.2541 37 1 1.1240 1.3389 7.0854 38 1 -0.2500 0.2106 6.9968 39 1 0.8764 -1.2897 8.6177 40 1 2.2507 -0.1620 8.7067 41 1 1.5111 -0.9453 12.2286 42 1 1.6175 -1.7255 -1.2869 43 1 1.7383 -0.1667 -2.1377 44 1 3.8540 0.6013 -2.7206 45 1 3.7696 1.2736 -1.0738 46 1 5.9182 0.2161 -0.5040 47 1 6.1109 1.2248 -1.9584 48 1 5.7834 -2.2265 -0.8068 49 1 5.8845 -2.8659 -2.4653 50 1 3.5408 -2.8742 -1.5879 51 1 3.7190 -1.8349 -3.0224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341123207.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:07 Heat of formation + Delta-G solvation = -128.699192 kcal Electronic energy + Delta-G solvation = -28635.716938 eV Core-core repulsion = 24569.974093 eV Total energy + Delta-G solvation = -4065.742845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55509 -39.71322 -38.49448 -35.71581 -35.37992 -34.32208 -33.26934 -32.17581 -31.58830 -30.97450 -28.51560 -27.30433 -25.98239 -24.63686 -24.48069 -22.90189 -20.91717 -20.84487 -20.77740 -20.32340 -18.33672 -17.43188 -17.04608 -16.60778 -16.38243 -15.93113 -15.67139 -15.56170 -15.40282 -15.08476 -14.97645 -14.50967 -14.41464 -14.10667 -13.99439 -13.79811 -13.62340 -13.10745 -12.86194 -12.58589 -12.39122 -12.26519 -12.22045 -11.97092 -11.81502 -11.78026 -11.63024 -11.27751 -10.89204 -10.85488 -10.69889 -10.63150 -10.57482 -10.07937 -9.94499 -9.83566 -9.42054 -9.16431 -9.10751 -8.89477 -8.54334 -8.35806 -6.00373 -4.03375 2.84048 3.15695 3.31588 3.37936 3.40810 3.42550 3.44285 3.74449 4.26560 4.32773 4.41567 4.44538 4.45833 4.50886 4.59651 4.68728 4.70667 4.85752 5.00004 5.06295 5.15094 5.19060 5.31168 5.33626 5.35306 5.36703 5.39521 5.51892 5.60419 5.66157 5.75294 5.83012 5.84940 6.21496 6.36066 6.37741 6.48700 6.57107 6.65357 6.69752 6.84521 7.05207 7.11787 7.18634 7.65708 7.78797 7.98719 8.20427 8.39713 8.81126 9.03372 9.60623 11.10889 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.001796 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.103607 B =15586.767421 C =16116.531310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.129 3.871 3 O -0.557 6.557 4 C 0.125 3.875 5 N -0.750 5.750 6 C 0.699 3.301 7 O -0.594 6.594 8 N -0.742 5.742 9 C 0.136 3.864 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.035 3.965 21 N -0.537 5.537 22 C 0.009 3.991 23 C 0.060 3.940 24 O -0.386 6.386 25 C 0.062 3.938 26 C 0.018 3.982 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.379 0.621 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.395 0.605 34 H 0.393 0.607 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.679 1.348 -32.281 32.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.087 3.913 3 O -0.367 6.367 4 C 0.000 4.000 5 N -0.408 5.408 6 C 0.399 3.601 7 O -0.472 6.472 8 N -0.397 5.397 9 C 0.012 3.988 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.094 4.094 21 N -0.262 5.262 22 C -0.119 4.119 23 C -0.017 4.017 24 O -0.305 6.305 25 C -0.015 4.015 26 C -0.110 4.110 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.230 0.770 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.230 0.770 34 H 0.226 0.774 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.116 0.884 50 H 0.107 0.893 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.153 0.416 -31.842 32.000 hybrid contribution -0.980 1.112 0.239 1.502 sum 2.173 1.528 -31.603 31.714 Atomic orbital electron populations 1.21779 0.92095 1.02932 1.03186 1.21464 0.94624 0.82232 0.92932 1.86569 1.32250 1.26309 1.91541 1.21703 0.99074 0.97029 0.82227 1.45130 1.52609 1.38442 1.04599 1.16020 0.81086 0.82594 0.80421 1.90919 1.39968 1.30449 1.85879 1.45382 1.50900 1.37510 1.05857 1.21493 1.00096 0.98339 0.78839 1.21890 0.98895 0.98695 0.96344 1.19031 0.97219 0.96593 0.88555 1.21207 1.27400 1.16249 0.91147 0.92658 1.25034 0.95415 0.95299 0.98782 1.69964 1.37523 1.29042 1.16730 0.86582 0.79650 0.80498 0.81169 1.20688 1.21218 1.19913 1.22765 0.87505 1.01479 0.97645 1.62205 1.06179 1.03309 1.54483 1.23118 0.95865 0.93079 0.99821 1.22720 0.92608 0.89169 0.97160 1.87990 1.67435 1.15349 1.59708 1.22682 0.91138 0.86843 1.00823 1.22829 0.97064 0.94589 0.96505 0.90732 0.91295 0.91662 0.77004 0.91238 0.90165 0.76996 0.77384 0.92027 0.92026 0.92779 0.92805 0.96258 0.96238 0.92939 0.89671 0.92732 0.93726 0.88539 0.91986 0.88372 0.91868 0.88402 0.89329 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.52 37.16 0.32 -0.56 16 2 C 0.13 0.88 0.89 -90.61 -0.08 0.80 16 3 O -0.56 -4.10 11.88 -35.23 -0.42 -4.52 16 4 C 0.12 1.18 4.38 -4.04 -0.02 1.17 16 5 N -0.75 -8.10 5.21 -65.22 -0.34 -8.44 16 6 C 0.70 10.77 8.57 -86.92 -0.74 10.02 16 7 O -0.59 -11.77 16.34 5.29 0.09 -11.68 16 8 N -0.74 -10.93 5.56 -65.22 -0.36 -11.29 16 9 C 0.14 2.45 5.67 -4.04 -0.02 2.43 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 20 C 0.03 0.21 4.38 -3.82 -0.02 0.20 16 21 N -0.54 -3.53 3.78 -234.30 -0.88 -4.42 16 22 C 0.01 0.06 5.27 -3.71 -0.02 0.04 16 23 C 0.06 0.40 7.01 37.21 0.26 0.66 16 24 O -0.39 -3.34 10.83 -35.23 -0.38 -3.72 16 25 C 0.06 0.42 7.01 37.21 0.26 0.68 16 26 C 0.02 0.11 5.55 -3.71 -0.02 0.09 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.45 6.76 -51.93 -0.35 0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.38 2.34 6.54 45.56 0.30 2.64 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.88 7.63 -51.93 -0.40 0.49 16 33 H 0.40 3.45 7.06 -40.82 -0.29 3.16 16 34 H 0.39 4.65 8.49 -40.82 -0.35 4.31 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.08 0.46 7.75 -51.93 -0.40 0.06 16 43 H 0.05 0.34 7.87 -51.93 -0.41 -0.07 16 44 H 0.04 0.30 8.11 -51.93 -0.42 -0.12 16 45 H 0.10 0.51 4.63 -51.93 -0.24 0.27 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 50 H 0.09 0.48 8.00 -51.93 -0.42 0.06 16 51 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 402.67 15.07 6.07 6.07 Total: -1.00 -34.37 402.67 -9.72 -44.09 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.43 Total: 3.52 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.77 Total: 0.05 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.85 Total: -50.34 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.71 Total: -19.92 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.37 -9.72 -44.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341123207.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.609 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds