Wall clock time and date at job start Tue Mar 31 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 120.00121 * 2 1 4 4 H 1.48499 * 109.47072 * 270.00034 * 3 2 1 5 5 H 1.48500 * 109.47276 * 29.99800 * 3 2 1 6 6 H 1.48496 * 109.47218 * 150.00066 * 3 2 1 7 7 C 1.38955 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99530 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00366 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99767 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00444 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47312 * 180.02562 * 12 10 9 14 14 C 1.34778 * 120.00156 * 180.02562 * 13 12 10 15 15 O 1.21285 * 119.99909 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00079 * 179.97438 * 14 13 12 17 17 O 1.42901 * 109.47145 * 179.97438 * 16 14 13 18 18 C 1.35937 * 117.00075 * 179.97438 * 17 16 14 19 19 C 1.38729 * 120.02341 * 0.25610 * 18 17 16 20 20 C 1.38150 * 119.99246 * 180.23583 * 19 18 17 21 21 C 1.38445 * 120.04234 * 359.48625 * 20 19 18 22 22 F 1.35091 * 119.97710 * 180.25999 * 21 20 19 23 23 C 1.38553 * 120.04706 * 0.28136 * 21 20 19 24 24 Cl 1.73599 * 119.99437 * 179.97438 * 23 21 20 25 25 C 1.38274 * 120.00637 * 359.97438 * 23 21 20 26 26 H 0.97003 * 119.99647 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00089 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.47517 * 60.00196 * 12 10 9 29 29 H 1.09001 * 109.47247 * 300.00253 * 12 10 9 30 30 H 0.97005 * 120.00020 * 0.02562 * 13 12 10 31 31 H 1.09003 * 109.46816 * 59.99726 * 16 14 13 32 32 H 1.09001 * 109.46955 * 300.00021 * 16 14 13 33 33 H 1.08002 * 120.00804 * 359.97438 * 19 18 17 34 34 H 1.08002 * 119.98274 * 179.77148 * 20 19 18 35 35 H 1.08000 * 120.01560 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1956 -5.9765 0.0027 14 6 1.7464 -7.2472 0.0027 15 8 0.5539 -7.4687 0.0028 16 6 2.7257 -8.3927 0.0027 17 8 2.0111 -9.6302 0.0033 18 6 2.7515 -10.7703 0.0028 19 6 4.1369 -10.6983 0.0071 20 6 4.8887 -11.8573 0.0016 21 6 4.2604 -13.0910 0.0027 22 9 4.9968 -14.2236 0.0026 23 6 2.8768 -13.1649 0.0033 24 17 2.0904 -14.7126 0.0039 25 6 2.1224 -12.0061 0.0034 26 1 -0.4850 0.8401 -0.0004 27 1 0.3534 -2.3906 0.0016 28 1 0.6167 -4.9209 -0.8875 29 1 0.6173 -4.9205 0.8924 30 1 3.1494 -5.7992 0.0030 31 1 3.3524 -8.3348 0.8926 32 1 3.3522 -8.3349 -0.8874 33 1 4.6278 -9.7363 0.0104 34 1 5.9672 -11.8011 0.0012 35 1 1.0439 -12.0636 0.0035 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343526096.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:16 Heat of formation + Delta-G solvation = -132.630689 kcal Electronic energy + Delta-G solvation = -23709.101870 eV Core-core repulsion = 19455.219457 eV Total energy + Delta-G solvation = -4253.882413 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.27977 -40.81219 -39.58365 -38.32360 -37.71370 -36.73428 -34.60226 -33.82124 -31.75533 -31.47478 -30.42970 -29.16869 -27.00487 -24.56351 -23.74770 -22.76556 -20.56468 -19.72959 -19.00675 -18.30184 -17.85763 -17.72518 -16.86326 -16.77889 -16.07583 -15.83745 -15.65072 -15.26079 -15.13216 -14.75670 -14.40823 -14.37160 -13.97605 -13.96263 -13.75141 -13.38040 -13.25411 -12.83318 -12.33878 -12.31417 -11.94854 -11.75651 -11.69538 -11.41144 -11.21016 -11.17657 -10.51676 -10.38812 -9.94400 -9.71276 -9.52673 -9.02660 -8.74211 -8.64218 -8.18373 -6.58738 -4.01169 0.41788 0.61607 1.43690 2.30202 2.50657 2.90756 3.06337 3.17762 3.22392 3.45508 3.64364 3.66488 4.03723 4.07049 4.30926 4.46360 4.67885 4.70612 4.71147 4.72453 4.76052 5.09617 5.15761 5.41383 5.46481 5.61313 5.76876 5.82992 5.93726 5.95226 6.43352 6.75791 7.39071 7.53522 7.83385 8.17128 8.36233 8.96731 9.30451 9.77573 10.57858 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.041756 B = 0.001680 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.394621 B =16662.675738 C =17312.624023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.599 6.599 12 C 0.111 3.889 13 N -0.701 5.701 14 C 0.514 3.486 15 O -0.524 6.524 16 C 0.040 3.960 17 O -0.280 6.280 18 C 0.140 3.860 19 C -0.179 4.179 20 C -0.097 4.097 21 C 0.068 3.932 22 F -0.129 7.129 23 C -0.034 4.034 24 Cl -0.041 7.041 25 C -0.115 4.115 26 H 0.275 0.725 27 H 0.396 0.604 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.413 0.587 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.489 -23.397 0.016 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.486 6.486 12 C -0.017 4.017 13 N -0.357 5.357 14 C 0.297 3.703 15 O -0.400 6.400 16 C -0.039 4.039 17 O -0.192 6.192 18 C 0.093 3.907 19 C -0.198 4.198 20 C -0.116 4.116 21 C 0.047 3.953 22 F -0.107 7.107 23 C -0.062 4.062 24 Cl -0.012 7.012 25 C -0.135 4.135 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.251 0.749 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.013 -23.505 0.023 24.262 hybrid contribution 0.496 0.733 -0.012 0.885 sum 6.509 -22.772 0.011 23.684 Atomic orbital electron populations 1.69615 1.06036 1.28661 1.48924 1.25350 0.95685 1.00020 0.96627 0.85795 0.79221 0.80385 0.78533 1.20220 1.20750 1.19292 1.19731 0.93483 0.81935 1.48480 0.87604 1.41793 1.09541 1.04480 1.62233 1.19670 0.88274 0.84923 0.85997 1.90496 1.13652 1.86779 1.57664 1.20993 0.91663 0.85403 1.03595 1.45495 1.11950 1.04061 1.74234 1.19798 0.89229 0.83440 0.77804 1.90762 1.16235 1.84472 1.48513 1.22578 0.94645 0.82192 1.04468 1.86195 1.33715 1.11353 1.87887 1.18805 0.89725 0.86516 0.95661 1.21312 0.92416 0.99958 1.06066 1.20926 1.01365 0.89660 0.99685 1.17259 0.87210 0.83145 1.07660 1.91534 1.76423 1.48651 1.94120 1.20619 0.90905 0.88501 1.06148 1.98405 1.80095 1.25965 1.96716 1.20125 1.01532 0.87460 1.04354 0.91489 0.76975 0.89528 0.89537 0.74924 0.88333 0.88324 0.83432 0.83237 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.17 13.05 55.50 0.72 -22.45 16 2 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 3 Si 0.93 19.92 29.55 -169.99 -5.02 14.90 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.31 -8.05 9.68 -14.93 -0.14 -8.19 16 8 H 0.11 2.89 7.16 -52.49 -0.38 2.51 16 9 N -0.55 -12.94 5.29 -10.97 -0.06 -13.00 16 10 C 0.43 9.16 7.85 -10.99 -0.09 9.07 16 11 O -0.60 -14.37 15.24 5.55 0.08 -14.28 16 12 C 0.11 1.87 6.15 -5.20 -0.03 1.83 16 13 N -0.70 -10.10 5.53 -61.47 -0.34 -10.44 16 14 C 0.51 7.09 7.91 -10.98 -0.09 7.00 16 15 O -0.52 -9.36 16.50 -14.35 -0.24 -9.59 16 16 C 0.04 0.37 5.22 36.01 0.19 0.56 16 17 O -0.28 -3.14 9.67 -39.45 -0.38 -3.53 16 18 C 0.14 1.29 6.68 -39.24 -0.26 1.03 16 19 C -0.18 -1.26 9.04 -39.43 -0.36 -1.61 16 20 C -0.10 -0.68 10.02 -39.54 -0.40 -1.07 16 21 C 0.07 0.59 7.27 -39.39 -0.29 0.31 16 22 F -0.13 -1.23 16.83 2.25 0.04 -1.19 16 23 C -0.03 -0.31 6.32 -39.45 -0.25 -0.56 16 24 Cl -0.04 -0.36 28.61 -51.86 -1.48 -1.85 16 25 C -0.12 -1.05 9.77 -39.41 -0.38 -1.44 16 26 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.40 9.04 7.90 -40.82 -0.32 8.72 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.41 5.55 7.44 -40.82 -0.30 5.25 16 31 H 0.10 0.65 7.65 -51.93 -0.40 0.25 16 32 H 0.10 0.65 7.67 -51.93 -0.40 0.25 16 33 H 0.15 0.68 6.30 -52.49 -0.33 0.35 16 34 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 337.83 15.07 5.09 5.09 Total: -1.00 -31.52 337.83 -6.73 -38.25 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -2.95 Total: 10.59 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -2.19 Total: 7.50 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.33 Total: -45.89 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.53 Total: -27.40 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.48 Total: -1.85 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.52 -6.73 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343526096.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.377 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds