Wall clock time and date at job start Tue Mar 31 2020 05:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.46925 * 2 1 4 4 C 1.46501 * 119.99779 * 89.99999 * 3 2 1 5 5 C 1.50696 * 109.47141 * 270.00029 * 4 3 2 6 6 H 1.07993 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99796 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99968 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00154 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47399 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46996 * 300.00081 * 9 7 5 12 12 H 1.48503 * 109.46967 * 59.99843 * 9 7 5 13 13 C 1.34774 * 119.99851 * 270.00147 * 3 2 1 14 14 O 1.21282 * 119.99705 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00282 * 0.02562 * 13 3 2 16 16 N 1.46905 * 109.47580 * 186.05873 * 15 13 3 17 17 C 1.48564 * 110.99607 * 60.66188 * 16 15 13 18 18 C 1.54379 * 104.59249 * 159.04127 * 17 16 15 19 19 H 1.09001 * 110.32312 * 95.04585 * 18 17 16 20 20 N 1.46905 * 110.40967 * 217.20776 * 18 17 16 21 21 C 1.46900 * 110.99573 * 192.19401 * 20 18 17 22 22 C 1.46901 * 110.99696 * 316.14692 * 20 18 17 23 23 C 1.54260 * 105.06293 * 336.14975 * 18 17 16 24 24 H 1.08998 * 110.32013 * 118.89087 * 23 18 17 25 25 S 1.81391 * 110.40913 * 241.05814 * 23 18 17 26 26 C 1.81404 * 103.00140 * 182.13989 * 25 23 18 27 27 C 1.48557 * 111.00276 * 176.08027 * 16 15 13 28 28 H 1.08995 * 109.47419 * 59.99774 * 1 2 3 29 29 H 1.08995 * 109.47044 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47244 * 299.99596 * 1 2 3 31 31 H 1.09004 * 109.47244 * 240.00404 * 2 1 3 32 32 H 1.08996 * 109.47544 * 119.99684 * 2 1 3 33 33 H 1.09007 * 109.46694 * 149.99738 * 4 3 2 34 34 H 1.09003 * 109.47216 * 30.00624 * 4 3 2 35 35 H 0.96999 * 120.00443 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47394 * 306.06362 * 15 13 3 37 37 H 1.09003 * 109.47229 * 66.05793 * 15 13 3 38 38 H 1.08996 * 110.41589 * 277.82358 * 17 16 15 39 39 H 1.09001 * 110.41243 * 40.26343 * 17 16 15 40 40 H 1.09002 * 109.46921 * 60.00473 * 21 20 18 41 41 H 1.08999 * 109.46542 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.47352 * 299.99811 * 21 20 18 43 43 H 1.09005 * 109.47111 * 66.70897 * 22 20 18 44 44 H 1.09003 * 109.46841 * 186.70127 * 22 20 18 45 45 H 1.08995 * 109.47351 * 306.70026 * 22 20 18 46 46 H 1.08994 * 109.46990 * 180.02562 * 26 25 23 47 47 H 1.09002 * 109.47084 * 300.00140 * 26 25 23 48 48 H 1.08999 * 109.46933 * 59.99821 * 26 25 23 49 49 H 1.08997 * 110.41579 * 319.74283 * 27 16 15 50 50 H 1.08999 * 110.40858 * 82.18793 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2688 5 6 1.0066 2.7822 1.7038 6 1 0.1159 2.7253 1.0958 7 6 0.9952 3.5056 2.8775 8 7 2.0801 3.5752 3.6176 9 14 -0.5613 4.3867 3.4165 10 1 -0.3134 5.0876 4.7020 11 1 -0.9535 5.3765 2.3812 12 1 -1.6540 3.3970 3.5944 13 6 2.2429 2.0166 -1.1672 14 8 2.6475 3.1599 -1.1672 15 6 1.9912 1.3065 -2.4722 16 7 2.4450 2.1513 -3.5851 17 6 3.9006 2.4300 -3.4826 18 6 4.3228 2.8249 -4.9141 19 1 4.3094 3.9089 -5.0273 20 7 5.6599 2.2976 -5.2177 21 6 6.1953 2.8970 -6.4474 22 6 6.5764 2.5050 -4.0886 23 6 3.2692 2.1769 -5.8359 24 1 2.7387 2.9429 -6.4014 25 16 4.0570 0.9947 -6.9637 26 6 2.6707 0.4135 -7.9792 27 6 2.2992 1.4449 -4.8838 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.0644 2.7986 1.1384 34 1 2.5506 1.3452 2.0284 35 1 2.0722 4.0844 4.4432 36 1 2.5388 0.3642 -2.4847 37 1 0.9246 1.1081 -2.5782 38 1 4.0824 3.2533 -2.7918 39 1 4.4369 1.5373 -3.1607 40 1 6.2655 3.9777 -6.3240 41 1 7.1860 2.4895 -6.6486 42 1 5.5319 2.6688 -7.2816 43 1 6.2548 1.8967 -3.2431 44 1 7.5854 2.2149 -4.3817 45 1 6.5692 3.5568 -3.8032 46 1 3.0323 -0.3145 -8.7052 47 1 1.9220 -0.0532 -7.3391 48 1 2.2247 1.2589 -8.5031 49 1 2.5847 0.3980 -4.7813 50 1 1.2751 1.5267 -5.2480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343587345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:20 Heat of formation + Delta-G solvation = -1.588752 kcal Electronic energy + Delta-G solvation = -27567.572125 eV Core-core repulsion = 23950.094074 eV Total energy + Delta-G solvation = -3617.478052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.94483 -38.62829 -36.25284 -35.19154 -32.78723 -31.65190 -29.96958 -29.33541 -28.79766 -27.85575 -27.22580 -25.85761 -23.60977 -22.75617 -22.56311 -21.17063 -20.21849 -18.33951 -16.99296 -16.68426 -16.51623 -16.09827 -15.52607 -15.34665 -15.19198 -14.69425 -14.41128 -14.31944 -14.00014 -13.69293 -13.61442 -13.33865 -13.15621 -13.05150 -12.64306 -12.44381 -12.37440 -12.22437 -12.11273 -12.11226 -11.67955 -11.53570 -11.47418 -11.40802 -11.17536 -11.08211 -10.90900 -10.85789 -10.68865 -10.48251 -10.03914 -9.84462 -9.56894 -8.89757 -8.48740 -8.41529 -8.36850 -7.64612 -7.53524 -6.02551 -4.06433 1.55666 2.51001 3.32451 3.37170 3.38159 3.45468 3.65536 3.86098 4.23546 4.32636 4.43015 4.50449 4.97469 4.98035 5.01683 5.05149 5.08993 5.21148 5.24430 5.26274 5.32260 5.34253 5.42286 5.49613 5.50068 5.54545 5.58006 5.61273 5.69001 5.76437 5.80105 5.85839 5.91861 5.94165 6.11538 6.17997 6.31432 6.67199 6.74523 6.84265 6.93034 6.97584 7.11904 7.45044 7.58002 7.94255 8.25906 8.43762 8.92833 9.13076 9.58303 11.05620 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.018357 B = 0.002986 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.976196 B = 9374.322300 C =10052.708889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.287 1.287 11 H -0.276 1.276 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.526 6.526 15 C 0.027 3.973 16 N -0.487 5.487 17 C 0.040 3.960 18 C 0.098 3.902 19 H 0.065 0.935 20 N -0.531 5.531 21 C 0.013 3.987 22 C 0.020 3.980 23 C -0.061 4.061 24 H 0.094 0.906 25 S -0.178 6.178 26 C -0.158 4.158 27 C 0.038 3.962 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.054 0.946 40 H 0.021 0.979 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.030 0.970 46 H 0.095 0.905 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.953 -8.500 -20.953 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.293 3.707 14 O -0.402 6.402 15 C -0.104 4.104 16 N -0.211 5.211 17 C -0.088 4.088 18 C -0.012 4.012 19 H 0.083 0.917 20 N -0.256 5.256 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.191 4.191 24 H 0.112 0.888 25 S 0.049 5.951 26 C -0.327 4.327 27 C -0.092 4.092 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.114 0.886 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.940 -8.133 -20.874 22.941 hybrid contribution -1.842 0.886 0.620 2.136 sum 3.098 -7.247 -20.254 21.734 Atomic orbital electron populations 1.22227 0.96312 1.00865 1.03401 1.21399 0.94604 0.83803 1.01575 1.48275 1.64060 1.13162 1.07692 1.19259 0.97471 0.92387 0.77959 1.21409 0.97524 1.31037 1.06108 0.92373 1.24930 0.96417 0.96289 0.96488 1.69918 1.27502 1.41707 1.14417 0.86594 0.83289 0.79938 0.77813 1.21240 1.20198 1.20286 1.20030 0.79091 0.86939 0.84673 1.90643 1.45507 1.17212 1.86823 1.22304 1.02449 0.94747 0.90928 1.65240 1.16492 1.39154 1.00215 1.23402 0.87649 1.02483 0.95306 1.22257 0.87796 0.97085 0.94054 0.91731 1.62016 1.01740 1.57675 1.04131 1.22767 1.01297 0.96383 0.93199 1.22449 0.96243 1.00038 0.94028 1.24124 0.98595 0.98593 0.97744 0.88811 1.87354 1.13535 1.54238 1.39991 1.23621 1.01983 1.04262 1.02856 1.23535 0.99132 0.96548 0.89948 0.93304 0.92844 0.90516 0.92207 0.90691 0.93999 0.95152 0.92729 0.92374 0.88155 0.87555 0.92755 0.96001 0.91431 0.88970 0.90858 0.91416 0.95155 0.88609 0.90955 0.91102 0.92252 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 37.16 0.38 -2.17 16 2 C 0.11 1.74 6.00 -4.04 -0.02 1.72 16 3 N -0.60 -12.42 2.46 -175.05 -0.43 -12.85 16 4 C 0.25 6.41 5.20 -5.19 -0.03 6.38 16 5 C -0.52 -14.61 8.92 -34.44 -0.31 -14.92 16 6 H 0.06 1.63 7.42 -52.49 -0.39 1.24 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.51 10.38 7.32 -10.99 -0.08 10.30 16 14 O -0.53 -12.95 13.98 5.56 0.08 -12.88 16 15 C 0.03 0.42 4.12 -4.98 -0.02 0.40 16 16 N -0.49 -7.26 5.19 -231.41 -1.20 -8.46 16 17 C 0.04 0.59 4.03 -2.18 -0.01 0.58 16 18 C 0.10 1.22 2.85 -66.33 -0.19 1.03 16 19 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 20 N -0.53 -6.08 3.73 -241.50 -0.90 -6.98 16 21 C 0.01 0.12 8.81 60.06 0.53 0.65 16 22 C 0.02 0.22 8.91 60.07 0.53 0.76 16 23 C -0.06 -0.67 3.45 -25.35 -0.09 -0.75 16 24 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 25 S -0.18 -1.80 17.34 -107.50 -1.86 -3.66 16 26 C -0.16 -1.19 10.62 101.05 1.07 -0.12 16 27 C 0.04 0.44 5.91 -2.18 -0.01 0.43 16 28 H 0.05 0.72 7.41 -51.93 -0.38 0.33 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.39 7.26 -51.93 -0.38 1.02 16 31 H 0.06 0.76 6.28 -51.93 -0.33 0.43 16 32 H 0.07 1.16 7.89 -51.93 -0.41 0.75 16 33 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 34 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.06 0.77 6.91 -51.93 -0.36 0.42 16 37 H 0.10 1.40 7.41 -51.93 -0.38 1.02 16 38 H 0.11 1.90 6.51 -51.93 -0.34 1.56 16 39 H 0.05 0.81 6.49 -51.93 -0.34 0.47 16 40 H 0.02 0.21 8.11 -51.93 -0.42 -0.21 16 41 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 42 H 0.09 0.89 5.53 -41.12 -0.23 0.67 16 43 H 0.07 0.87 6.38 -51.93 -0.33 0.54 16 44 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 45 H 0.03 0.34 8.11 -51.93 -0.42 -0.08 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 48 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 49 H 0.06 0.67 7.59 -51.93 -0.39 0.28 16 50 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -32.11 394.53 -9.81 -41.93 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.82 Total: 0.03 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 1.66 Total: 5.90 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -1.80 Total: -54.15 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -1.86 Total: -3.66 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.11 -9.81 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343587345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.338 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds