Wall clock time and date at job start Tue Mar 31 2020 05:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81394 * 103.00395 * 2 1 4 4 H 1.09004 * 110.76587 * 303.25466 * 3 2 1 5 5 C 1.54321 * 110.70427 * 66.45065 * 3 2 1 6 6 N 1.47448 * 107.23159 * 140.66687 * 5 3 2 7 7 C 1.46900 * 111.00041 * 123.26094 * 6 5 3 8 8 C 1.52995 * 109.47016 * 69.15688 * 7 6 5 9 9 C 1.50705 * 109.47162 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99386 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00097 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00134 * 359.97438 * 11 9 8 13 13 C 1.46510 * 119.99776 * 179.97438 * 11 9 8 14 14 C 1.50699 * 109.46712 * 90.00366 * 13 11 9 15 15 H 1.08003 * 120.00334 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99776 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00086 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99893 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47058 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46926 * 120.00321 * 18 16 14 21 21 H 1.48500 * 109.47288 * 240.00043 * 18 16 14 22 22 C 1.47846 * 108.56553 * 0.99350 * 6 5 3 23 23 C 1.54908 * 104.89238 * 335.84749 * 22 6 5 24 24 H 1.08998 * 110.98705 * 279.03118 * 23 22 6 25 25 N 1.46899 * 110.99021 * 155.21863 * 23 22 6 26 26 C 1.46905 * 110.99971 * 61.45308 * 25 23 22 27 27 C 1.46905 * 111.00143 * 185.40418 * 25 23 22 28 28 H 1.09004 * 109.47722 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46957 * 300.00085 * 1 2 3 30 30 H 1.08995 * 109.47334 * 59.99625 * 1 2 3 31 31 H 1.08999 * 109.88748 * 21.26421 * 5 3 2 32 32 H 1.08997 * 110.02694 * 260.14893 * 5 3 2 33 33 H 1.09001 * 109.47310 * 189.16067 * 7 6 5 34 34 H 1.09001 * 109.46761 * 309.15792 * 7 6 5 35 35 H 1.08999 * 109.47200 * 299.99832 * 8 7 6 36 36 H 1.09001 * 109.47271 * 60.00417 * 8 7 6 37 37 H 1.09000 * 109.46842 * 90.00130 * 12 11 9 38 38 H 1.09003 * 109.47178 * 209.99411 * 12 11 9 39 39 H 1.08990 * 109.47266 * 330.00276 * 12 11 9 40 40 H 1.08992 * 109.46840 * 209.99657 * 13 11 9 41 41 H 1.08998 * 109.47177 * 330.00455 * 13 11 9 42 42 H 0.96996 * 120.00426 * 180.02562 * 17 16 14 43 43 H 1.09002 * 110.37464 * 94.73346 * 22 6 5 44 44 H 1.08999 * 110.37318 * 216.96123 * 22 6 5 45 45 H 1.09000 * 109.47380 * 59.99747 * 26 25 23 46 46 H 1.09004 * 109.47100 * 179.97438 * 26 25 23 47 47 H 1.08999 * 109.47139 * 299.99959 * 26 25 23 48 48 H 1.09002 * 109.46477 * 59.99902 * 27 25 23 49 49 H 1.08998 * 109.46834 * 179.97438 * 27 25 23 50 50 H 1.09000 * 109.47067 * 300.00102 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.7645 2.2697 -0.8523 5 6 1.7830 2.4288 1.3233 6 7 2.8351 3.3900 1.7015 7 6 2.2810 4.7410 1.8620 8 6 1.3843 4.7805 3.1010 9 6 0.8152 6.1663 3.2654 10 8 1.0987 7.0365 2.4694 11 7 -0.0085 6.4385 4.2966 12 6 -0.3513 5.3873 5.2576 13 6 -0.5612 7.7859 4.4567 14 6 -1.8691 7.8837 3.7144 15 1 -2.2503 7.0280 3.1769 16 6 -2.5791 9.0656 3.7216 17 7 -2.1147 10.1077 4.3757 18 14 -4.1999 9.1871 2.8009 19 1 -4.4986 7.8858 2.1507 20 1 -5.2869 9.5243 3.7548 21 1 -4.1030 10.2475 1.7658 22 6 3.8873 3.3689 0.6631 23 6 3.7624 1.9754 -0.0020 24 1 4.2605 1.2118 0.5953 25 7 4.2915 1.9970 -1.3722 26 6 5.7191 2.3433 -1.3799 27 6 4.0575 0.7133 -2.0472 28 1 -0.3635 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6769 1.6708 2.0994 32 1 0.8365 2.9510 1.1835 33 1 3.0952 5.4561 1.9798 34 1 1.6945 5.0002 0.9806 35 1 0.5701 4.0655 2.9832 36 1 1.9708 4.5213 3.9825 37 1 0.3726 5.3899 6.0726 38 1 -1.3487 5.5713 5.6571 39 1 -0.3328 4.4186 4.7584 40 1 -0.7282 7.9867 5.5149 41 1 0.1404 8.5166 4.0544 42 1 -2.6143 10.9391 4.3810 43 1 3.7128 4.1564 -0.0701 44 1 4.8712 3.4858 1.1173 45 1 6.2752 1.6051 -0.8021 46 1 6.0854 2.3516 -2.4066 47 1 5.8561 3.3297 -0.9369 48 1 2.9865 0.5149 -2.0891 49 1 4.4585 0.7569 -3.0598 50 1 4.5534 -0.0840 -1.4936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343683263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:29 Heat of formation + Delta-G solvation = -15.994620 kcal Electronic energy + Delta-G solvation = -26690.670676 eV Core-core repulsion = 23072.567939 eV Total energy + Delta-G solvation = -3618.102737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.89288 -38.85933 -36.70264 -34.81150 -32.86065 -32.40818 -30.16420 -29.17869 -28.69961 -27.62667 -27.47847 -25.76123 -24.17453 -23.61763 -22.31364 -20.75390 -20.41491 -18.28910 -17.33498 -17.00194 -16.53732 -16.03072 -15.58503 -15.32565 -15.22190 -14.98300 -14.61711 -14.31229 -14.10454 -14.02696 -13.84167 -13.54734 -13.45628 -13.36521 -12.72059 -12.64228 -12.52668 -12.33692 -12.19153 -12.00577 -11.90156 -11.70846 -11.70074 -11.53815 -11.39565 -11.14464 -11.09321 -10.91381 -10.78250 -10.56832 -10.17955 -10.16632 -9.61515 -8.89800 -8.73376 -8.51601 -8.44744 -7.91909 -7.63309 -6.05134 -4.09868 1.33505 2.20559 3.28381 3.32897 3.35769 3.39034 3.46593 3.84134 4.01468 4.20405 4.31098 4.45013 4.74692 4.84006 4.86853 4.88349 4.98178 5.03189 5.09469 5.12978 5.18793 5.26696 5.28597 5.35341 5.36643 5.36763 5.44053 5.57677 5.60956 5.61221 5.67089 5.73329 5.76601 5.83621 5.93518 6.05744 6.09237 6.22330 6.61390 6.64285 6.79650 6.90304 7.06558 7.44724 7.54687 7.91431 8.23072 8.43042 8.89836 9.10388 9.55262 11.03013 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.002543 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.116142 B =11008.101099 C =11516.629627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.245 6.245 3 C -0.073 4.073 4 H 0.102 0.898 5 C 0.046 3.954 6 N -0.524 5.524 7 C 0.067 3.933 8 C -0.133 4.133 9 C 0.504 3.496 10 O -0.546 6.546 11 N -0.603 5.603 12 C 0.084 3.916 13 C 0.244 3.756 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.055 3.945 23 C 0.099 3.901 24 H 0.067 0.933 25 N -0.538 5.538 26 C 0.023 3.977 27 C 0.016 3.984 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.263 0.737 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.027 0.973 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.065 0.935 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.552 -22.171 -7.675 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.017 6.017 3 C -0.203 4.203 4 H 0.120 0.880 5 C -0.084 4.084 6 N -0.248 5.248 7 C -0.061 4.061 8 C -0.174 4.174 9 C 0.290 3.710 10 O -0.424 6.424 11 N -0.335 5.335 12 C -0.060 4.060 13 C 0.125 3.875 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.075 4.075 23 C -0.012 4.012 24 H 0.085 0.915 25 N -0.262 5.262 26 C -0.125 4.125 27 C -0.132 4.132 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.045 0.955 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.084 0.916 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 12.255 -22.173 -7.816 26.513 hybrid contribution -1.861 0.715 -0.722 2.120 sum 10.394 -21.458 -8.538 25.326 Atomic orbital electron populations 1.23427 0.94203 1.06472 1.05363 1.86744 1.07547 1.09957 1.97459 1.24590 0.99421 0.94278 1.01992 0.87961 1.23329 0.94845 0.96108 0.94123 1.63621 1.10510 1.07298 1.43400 1.22024 0.98379 0.88623 0.97084 1.21617 0.99770 0.96003 1.00003 1.20298 0.79547 0.89599 0.81548 1.90668 1.60532 1.48611 1.42579 1.48159 1.46036 1.13528 1.25803 1.21630 1.01277 0.90565 0.92532 1.19291 0.93990 0.77189 0.97058 1.21463 1.05136 0.97756 1.32014 0.92522 1.24945 0.98220 0.95474 0.95544 1.69938 1.38883 1.02320 1.42235 0.86448 0.83239 0.78116 0.79638 1.19865 1.20941 1.20851 1.23011 0.96411 0.95438 0.92595 1.22622 0.91627 0.97642 0.89291 0.91493 1.62012 1.16573 1.32093 1.15554 1.22421 0.87049 1.00986 1.02086 1.22642 1.03630 0.88658 0.98298 0.88107 0.90159 0.90399 0.89128 0.91786 0.89715 0.93494 0.89861 0.88781 0.93691 0.90878 0.92460 0.95019 0.93841 0.92759 0.91771 0.89695 0.95465 0.91146 0.90952 0.89603 0.91581 0.95440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 10.63 101.05 1.07 0.17 16 2 S -0.24 -2.21 19.23 -107.50 -2.07 -4.28 16 3 C -0.07 -0.71 2.51 -24.75 -0.06 -0.77 16 4 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 5 C 0.05 0.48 5.69 -2.83 -0.02 0.46 16 6 N -0.52 -6.06 5.16 -231.25 -1.19 -7.25 16 7 C 0.07 0.94 3.82 -3.83 -0.01 0.92 16 8 C -0.13 -1.95 4.27 -27.88 -0.12 -2.07 16 9 C 0.50 10.39 7.67 -10.99 -0.08 10.31 16 10 O -0.55 -13.66 15.56 5.55 0.09 -13.57 16 11 N -0.60 -12.84 2.86 -182.95 -0.52 -13.36 16 12 C 0.08 1.33 10.24 59.85 0.61 1.94 16 13 C 0.24 6.44 5.16 -5.19 -0.03 6.42 16 14 C -0.52 -14.98 9.39 -34.44 -0.32 -15.30 16 15 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 18 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.05 0.57 5.11 -2.30 -0.01 0.56 16 23 C 0.10 0.95 2.27 -65.42 -0.15 0.80 16 24 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 25 N -0.54 -4.96 4.92 -240.40 -1.18 -6.14 16 26 C 0.02 0.17 9.36 60.07 0.56 0.73 16 27 C 0.02 0.14 8.74 60.07 0.53 0.66 16 28 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.92 7.78 -51.93 -0.40 0.52 16 32 H 0.06 0.70 6.87 -51.93 -0.36 0.35 16 33 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 34 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 35 H 0.08 1.10 6.35 -51.93 -0.33 0.77 16 36 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 40 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 41 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.06 0.73 7.81 -51.93 -0.41 0.32 16 44 H 0.08 0.81 8.00 -51.93 -0.42 0.40 16 45 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 47 H 0.07 0.54 7.12 -51.93 -0.37 0.17 16 48 H 0.09 0.76 5.76 -51.93 -0.30 0.46 16 49 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 50 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -32.84 403.38 -10.37 -43.21 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -9.15 Total: -2.04 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 1.87 Total: 6.47 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -2.16 Total: -52.76 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -2.07 Total: -4.28 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.84 -10.37 -43.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343683263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.213 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds