Wall clock time and date at job start Tue Mar 31 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99878 * 2 1 4 4 H 1.48503 * 109.46950 * 240.00300 * 3 2 1 5 5 H 1.48500 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47151 * 119.99837 * 3 2 1 7 7 C 1.38946 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00498 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99655 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99871 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00255 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00141 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46959 * 180.02562 * 12 10 9 14 14 C 1.34776 * 119.99560 * 180.02562 * 13 12 10 15 15 O 1.21279 * 120.00488 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99842 * 180.02562 * 14 13 12 17 17 O 1.42901 * 109.47012 * 179.97438 * 16 14 13 18 18 C 1.35971 * 116.99902 * 179.97438 * 17 16 14 19 19 C 1.38689 * 120.03590 * 0.25602 * 18 17 16 20 20 C 1.38154 * 119.98291 * 180.25501 * 19 18 17 21 21 C 1.38476 * 120.05078 * 359.48616 * 20 19 18 22 22 F 1.35102 * 119.96302 * 180.27955 * 21 20 19 23 23 C 1.38432 * 120.06454 * 0.25792 * 21 20 19 24 24 C 1.38255 * 120.02356 * 0.02562 * 23 21 20 25 25 Cl 1.73595 * 120.02946 * 180.02562 * 24 23 21 26 26 H 0.96999 * 120.00454 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99866 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.46923 * 59.99757 * 12 10 9 29 29 H 1.08995 * 109.46953 * 299.99842 * 12 10 9 30 30 H 0.96999 * 120.00138 * 0.02562 * 13 12 10 31 31 H 1.08996 * 109.47606 * 59.99794 * 16 14 13 32 32 H 1.09009 * 109.46841 * 299.99678 * 16 14 13 33 33 H 1.07997 * 120.00714 * 359.97438 * 19 18 17 34 34 H 1.08002 * 119.97709 * 179.77131 * 20 19 18 35 35 H 1.08004 * 119.98567 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9764 0.0005 14 6 1.7467 -7.2470 0.0006 15 8 0.5543 -7.4688 0.0007 16 6 2.7260 -8.3925 0.0017 17 8 2.0115 -9.6300 0.0021 18 6 2.7521 -10.7704 0.0026 19 6 4.1371 -10.6986 0.0080 20 6 4.8885 -11.8579 0.0031 21 6 4.2599 -13.0918 0.0036 22 9 4.9965 -14.2243 0.0045 23 6 2.8776 -13.1658 0.0036 24 6 2.1228 -12.0074 0.0025 25 17 0.3893 -12.1001 0.0032 26 1 -0.4851 0.8400 -0.0004 27 1 0.3534 -2.3906 0.0002 28 1 0.6169 -4.9208 -0.8896 29 1 0.6176 -4.9205 0.8903 30 1 3.1496 -5.7991 0.0008 31 1 3.3520 -8.3345 0.8920 32 1 3.3533 -8.3350 -0.8880 33 1 4.6281 -9.7367 0.0114 34 1 5.9671 -11.8019 0.0035 35 1 2.3886 -14.1288 0.0035 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344158568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:12 Heat of formation + Delta-G solvation = -132.131564 kcal Electronic energy + Delta-G solvation = -23888.853801 eV Core-core repulsion = 19634.993031 eV Total energy + Delta-G solvation = -4253.860770 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.28773 -40.79757 -39.55842 -38.28500 -37.51228 -36.67777 -34.57780 -33.79884 -31.61234 -31.46433 -30.56555 -29.09471 -26.98710 -24.56412 -23.63418 -22.80885 -20.52854 -19.70891 -18.98353 -18.28177 -17.89545 -17.70275 -16.79918 -16.77603 -15.99395 -15.80239 -15.48329 -15.23478 -15.13295 -14.84441 -14.59319 -14.28973 -14.02898 -13.93527 -13.74922 -13.36964 -13.19961 -12.72751 -12.29168 -12.10860 -11.78839 -11.69797 -11.66435 -11.31339 -11.21170 -11.15121 -10.55440 -10.37311 -9.90422 -9.69047 -9.53415 -8.99479 -8.72627 -8.56692 -8.17076 -6.57305 -3.99897 0.46118 0.60915 1.73201 2.23852 2.54477 2.90685 3.09246 3.18050 3.21032 3.43251 3.65930 3.79718 4.05226 4.13680 4.22857 4.46894 4.64617 4.72900 4.73315 4.77469 4.78259 5.03434 5.10896 5.34580 5.51224 5.52714 5.79279 5.85240 5.97036 6.06465 6.46047 6.71445 7.40026 7.56716 7.84594 8.20744 8.37691 8.97870 9.31807 9.79016 10.59220 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.029394 B = 0.001899 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.335505 B =14740.251110 C =15672.139101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.599 6.599 12 C 0.111 3.889 13 N -0.702 5.702 14 C 0.514 3.486 15 O -0.521 6.521 16 C 0.038 3.962 17 O -0.272 6.272 18 C 0.135 3.865 19 C -0.172 4.172 20 C -0.105 4.105 21 C 0.070 3.930 22 F -0.135 7.135 23 C -0.107 4.107 24 C -0.043 4.043 25 Cl -0.035 7.035 26 H 0.276 0.724 27 H 0.396 0.604 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.412 0.588 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 -23.551 0.011 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.486 6.486 12 C -0.016 4.016 13 N -0.358 5.358 14 C 0.297 3.703 15 O -0.396 6.396 16 C -0.040 4.040 17 O -0.183 6.183 18 C 0.087 3.913 19 C -0.191 4.191 20 C -0.124 4.124 21 C 0.051 3.949 22 F -0.113 7.113 23 C -0.127 4.127 24 C -0.071 4.071 25 Cl -0.006 7.006 26 H 0.086 0.914 27 H 0.230 0.770 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.250 0.750 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.899 -23.519 0.012 24.247 hybrid contribution 0.456 0.832 -0.001 0.948 sum 6.354 -22.687 0.011 23.560 Atomic orbital electron populations 1.69603 1.06027 1.28764 1.48873 1.25346 0.95685 1.00012 0.96633 0.85856 0.78783 0.80060 0.79178 1.19741 1.20820 1.19738 1.19680 0.93446 0.81948 1.48579 0.87666 1.41791 1.09538 1.04473 1.62260 1.19676 0.88272 0.84926 0.85962 1.90493 1.13659 1.86786 1.57665 1.20987 0.91662 0.85393 1.03578 1.45487 1.11907 1.04051 1.74366 1.19770 0.89242 0.83397 0.77878 1.90769 1.16171 1.84413 1.48286 1.22592 0.94709 0.82291 1.04417 1.86278 1.33256 1.11170 1.87643 1.18744 0.89913 0.86046 0.96563 1.21152 0.91516 1.00137 1.06290 1.21059 1.01447 0.90279 0.99601 1.17312 0.88536 0.82494 1.06586 1.91525 1.76614 1.48966 1.94231 1.20835 0.91946 0.98486 1.01415 1.19857 0.86831 0.91184 1.09222 1.98416 1.06966 1.98489 1.96749 0.91439 0.76969 0.89550 0.89558 0.74967 0.88353 0.88347 0.83171 0.83603 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.31 13.05 55.50 0.72 -22.59 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.04 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.31 -8.10 9.68 -14.93 -0.14 -8.25 16 8 H 0.11 2.88 7.16 -52.49 -0.38 2.50 16 9 N -0.55 -13.06 5.29 -10.96 -0.06 -13.12 16 10 C 0.43 9.26 7.85 -10.99 -0.09 9.17 16 11 O -0.60 -14.48 15.24 5.55 0.08 -14.40 16 12 C 0.11 1.90 6.15 -5.19 -0.03 1.87 16 13 N -0.70 -10.33 5.53 -61.48 -0.34 -10.67 16 14 C 0.51 7.30 7.91 -10.99 -0.09 7.22 16 15 O -0.52 -9.55 16.50 -14.35 -0.24 -9.78 16 16 C 0.04 0.38 5.22 36.01 0.19 0.56 16 17 O -0.27 -3.27 9.13 -39.56 -0.36 -3.63 16 18 C 0.13 1.34 6.68 -39.21 -0.26 1.08 16 19 C -0.17 -1.25 9.04 -39.45 -0.36 -1.61 16 20 C -0.10 -0.71 10.02 -39.52 -0.40 -1.11 16 21 C 0.07 0.57 7.30 -39.42 -0.29 0.28 16 22 F -0.13 -1.16 17.27 2.25 0.04 -1.12 16 23 C -0.11 -0.88 9.80 -39.50 -0.39 -1.27 16 24 C -0.04 -0.43 6.33 -39.37 -0.25 -0.68 16 25 Cl -0.04 -0.39 28.50 -51.86 -1.48 -1.87 16 26 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.40 9.13 7.90 -40.82 -0.32 8.81 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.41 5.66 7.44 -40.82 -0.30 5.36 16 31 H 0.10 0.69 7.65 -51.93 -0.40 0.29 16 32 H 0.10 0.69 7.67 -51.92 -0.40 0.29 16 33 H 0.15 0.72 6.30 -52.49 -0.33 0.39 16 34 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -31.92 337.68 -6.71 -38.63 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -2.95 Total: 10.59 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -2.20 Total: 7.85 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.33 Total: -46.38 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.51 Total: -27.81 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.92 -6.71 -38.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344158568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.499 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds