Wall clock time and date at job start Tue Mar 31 2020 05:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00092 * 2 1 4 4 O 1.20820 * 119.99923 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99988 * 180.02562 * 3 2 1 6 6 N 1.46899 * 109.47342 * 175.59040 * 5 3 2 7 7 C 1.46902 * 111.00161 * 164.06816 * 6 5 3 8 8 C 1.52999 * 109.47186 * 293.95568 * 7 6 5 9 9 N 1.46902 * 109.47186 * 179.97438 * 8 7 6 10 10 C 1.47019 * 110.99785 * 46.31871 * 9 8 7 11 11 C 1.53096 * 109.25676 * 182.35190 * 10 9 8 12 12 O 1.43013 * 109.29192 * 303.21779 * 11 10 9 13 13 C 1.43014 * 113.74153 * 58.64947 * 12 11 10 14 14 C 1.47013 * 110.99901 * 170.00148 * 9 8 7 15 15 C 1.46900 * 110.99914 * 288.02325 * 6 5 3 16 16 C 1.50702 * 109.46960 * 159.62420 * 15 6 5 17 17 O 1.21291 * 120.00132 * 2.55600 * 16 15 6 18 18 N 1.34772 * 119.99643 * 182.55689 * 16 15 6 19 19 C 1.37106 * 119.99852 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00020 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99831 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00182 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99688 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47381 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47152 * 119.99628 * 23 21 19 26 26 H 1.48501 * 109.47240 * 239.99889 * 23 21 19 27 27 H 1.09001 * 109.47091 * 300.00022 * 1 2 3 28 28 H 1.09005 * 109.47193 * 59.99999 * 1 2 3 29 29 H 1.09002 * 109.47270 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47502 * 55.58847 * 5 3 2 31 31 H 1.08999 * 109.47264 * 295.59313 * 5 3 2 32 32 H 1.09001 * 109.47469 * 173.95191 * 7 6 5 33 33 H 1.08999 * 109.47019 * 53.95519 * 7 6 5 34 34 H 1.09002 * 109.46927 * 59.99931 * 8 7 6 35 35 H 1.08999 * 109.47102 * 299.99900 * 8 7 6 36 36 H 1.08994 * 109.47525 * 62.43740 * 10 9 8 37 37 H 1.08999 * 109.54503 * 302.30735 * 10 9 8 38 38 H 1.08999 * 109.51086 * 183.26059 * 11 10 9 39 39 H 1.09008 * 109.50664 * 63.17221 * 11 10 9 40 40 H 1.09005 * 109.50797 * 61.26050 * 13 12 11 41 41 H 1.08997 * 109.51245 * 181.35271 * 13 12 11 42 42 H 1.08996 * 109.51032 * 57.67384 * 14 9 8 43 43 H 1.09001 * 109.50660 * 297.53975 * 14 9 8 44 44 H 1.09004 * 109.47175 * 279.62517 * 15 6 5 45 45 H 1.08996 * 109.47260 * 39.62317 * 15 6 5 46 46 H 0.96995 * 120.00710 * 359.97438 * 18 16 15 47 47 H 0.96998 * 119.99657 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9831 2.6794 -0.1069 7 6 5.3956 2.8390 0.2635 8 6 5.5727 2.5182 1.7490 9 7 6.9853 2.6772 2.1193 10 6 7.5317 3.9335 1.5858 11 6 9.0170 4.0306 1.9439 12 8 9.1683 3.9327 3.3627 13 6 8.6478 2.7205 3.9150 14 6 7.1584 2.6106 3.5777 15 6 3.7302 3.2028 -1.4561 16 6 3.6849 4.7085 -1.4104 17 8 3.8932 5.2901 -0.3666 18 7 3.4129 5.4086 -2.5294 19 6 3.3711 6.7784 -2.4877 20 1 3.5558 7.2963 -1.5581 21 6 3.0902 7.5003 -3.6413 22 7 2.8650 6.8701 -4.7723 23 14 3.0326 9.3665 -3.5844 24 1 3.3198 9.8288 -2.2027 25 1 4.0498 9.9217 -4.5130 26 1 1.6829 9.8328 -3.9923 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.9593 0.7140 -0.8487 31 1 3.9528 0.8503 0.9260 32 1 5.7073 3.8661 0.0739 33 1 6.0060 2.1587 -0.3304 34 1 5.2611 1.4910 1.9385 35 1 4.9623 3.1985 2.3428 36 1 6.9963 4.7768 2.0219 37 1 7.4168 3.9500 0.5020 38 1 9.4124 4.9866 1.6009 39 1 9.5613 3.2178 1.4629 40 1 9.1807 1.8692 3.4913 41 1 8.7768 2.7287 4.9972 42 1 6.7706 1.6613 3.9473 43 1 6.6175 3.4327 4.0463 44 1 4.5292 2.8835 -2.1253 45 1 2.7766 2.8215 -1.8209 46 1 3.2467 4.9436 -3.3642 47 1 2.6693 7.3741 -5.5776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345981921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:16 Heat of formation + Delta-G solvation = -133.820265 kcal Electronic energy + Delta-G solvation = -29275.887894 eV Core-core repulsion = 25074.089888 eV Total energy + Delta-G solvation = -4201.798006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.46383 -39.69407 -38.53334 -37.05695 -36.27600 -35.27981 -33.79147 -31.40108 -31.18867 -30.07580 -29.44701 -27.45535 -26.75243 -25.02739 -24.17609 -23.48617 -21.71381 -20.61595 -20.08845 -19.20121 -17.87435 -17.65039 -16.81296 -16.75463 -16.45666 -16.20555 -15.84241 -15.27450 -15.23715 -15.14715 -14.90844 -14.43023 -14.33418 -13.97409 -13.76504 -13.68084 -13.38808 -13.11765 -12.94958 -12.48711 -12.29114 -12.15760 -12.09919 -11.92529 -11.53892 -11.46708 -11.46087 -11.21665 -10.98257 -10.77526 -10.73504 -10.47620 -10.31576 -10.25474 -10.17989 -9.75804 -9.45113 -8.54469 -8.44916 -7.98471 -7.89923 -6.37152 -3.77454 2.33278 2.59461 3.19161 3.29269 3.36562 3.52119 3.77014 3.96358 4.03523 4.27562 4.70426 4.81221 4.83341 4.92249 5.00563 5.03673 5.05832 5.06689 5.13974 5.19704 5.20422 5.24883 5.30471 5.33830 5.43639 5.46520 5.50427 5.63370 5.68347 5.72460 5.78849 5.85402 5.91030 6.05734 6.11635 6.30077 6.40500 6.78432 6.86067 7.02317 7.04161 7.16471 7.59715 7.90888 8.11179 8.67081 9.23336 9.59891 10.12029 10.81001 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.007171 B = 0.004119 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3903.421807 B = 6796.796547 C =10237.492447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.471 6.471 5 C 0.061 3.939 6 N -0.501 5.501 7 C 0.060 3.940 8 C 0.058 3.942 9 N -0.536 5.536 10 C 0.010 3.990 11 C 0.065 3.935 12 O -0.388 6.388 13 C 0.065 3.935 14 C 0.017 3.983 15 C 0.048 3.952 16 C 0.452 3.548 17 O -0.574 6.574 18 N -0.567 5.567 19 C -0.295 4.295 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.391 0.609 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -16.438 10.328 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.290 3.710 4 O -0.354 6.354 5 C -0.069 4.069 6 N -0.227 5.227 7 C -0.067 4.067 8 C -0.069 4.069 9 N -0.262 5.262 10 C -0.118 4.118 11 C -0.012 4.012 12 O -0.306 6.306 13 C -0.012 4.012 14 C -0.111 4.111 15 C -0.084 4.084 16 C 0.237 3.763 17 O -0.457 6.457 18 N -0.204 5.204 19 C -0.424 4.424 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.755 3.245 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.119 0.881 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.924 -15.607 11.087 20.040 hybrid contribution -0.758 0.623 -1.042 1.431 sum 5.166 -14.984 10.045 18.764 Atomic orbital electron populations 1.23212 0.76493 1.03274 1.02708 1.86465 1.23315 1.33919 1.84886 1.23739 0.92102 0.81441 0.73703 1.90771 1.66436 1.35902 1.42340 1.21643 0.88343 0.92145 1.04724 1.61023 1.20337 1.13943 1.27385 1.22268 0.86272 1.03431 0.94730 1.22129 0.87377 1.01138 0.96290 1.62304 1.17775 1.35052 1.11050 1.22909 0.95897 0.91130 1.01886 1.22703 0.94932 1.02397 0.81209 1.87979 1.81181 1.39754 1.21703 1.22630 0.92295 0.87514 0.98752 1.22776 0.97738 1.02043 0.88561 1.21913 1.01544 0.96677 0.88216 1.19576 0.84209 0.87589 0.84928 1.90505 1.54232 1.70692 1.30308 1.41841 1.62105 1.07091 1.09370 1.19730 1.44680 0.81110 0.96896 0.87935 1.25236 0.97394 1.00564 0.94812 1.69622 1.48599 1.36408 0.99904 0.85823 0.77720 0.82454 0.78478 1.19262 1.20812 1.20801 0.91981 0.91874 0.88365 0.90630 0.86511 0.88108 0.94209 0.90946 0.93021 0.93103 0.88800 0.88360 0.92412 0.92432 0.88685 0.89783 0.93695 0.92901 0.89438 0.77627 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.49 10.57 -39.25 -0.41 -4.90 16 3 C 0.45 6.56 7.39 36.00 0.27 6.83 16 4 O -0.47 -8.96 15.04 -18.75 -0.28 -9.24 16 5 C 0.06 0.75 5.43 -4.98 -0.03 0.72 16 6 N -0.50 -8.20 3.67 -237.52 -0.87 -9.07 16 7 C 0.06 0.88 3.84 -3.82 -0.01 0.86 16 8 C 0.06 0.75 5.24 -3.82 -0.02 0.73 16 9 N -0.54 -6.46 4.87 -234.30 -1.14 -7.60 16 10 C 0.01 0.13 4.94 -3.71 -0.02 0.11 16 11 C 0.06 0.73 7.01 37.21 0.26 0.99 16 12 O -0.39 -4.78 10.83 -35.23 -0.38 -5.17 16 13 C 0.07 0.63 7.01 37.21 0.26 0.89 16 14 C 0.02 0.18 5.63 -3.71 -0.02 0.16 16 15 C 0.05 0.87 5.01 -4.97 -0.02 0.85 16 16 C 0.45 10.92 7.49 -10.99 -0.08 10.84 16 17 O -0.57 -15.70 14.74 5.55 0.08 -15.61 16 18 N -0.57 -14.70 5.29 -10.96 -0.06 -14.76 16 19 C -0.29 -8.36 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 23 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.12 1.17 5.94 -51.93 -0.31 0.86 16 32 H 0.10 1.79 4.83 -51.93 -0.25 1.54 16 33 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.07 0.78 6.28 -51.93 -0.33 0.46 16 35 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.23 6.05 -51.93 -0.31 0.92 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.84 7.99 -51.93 -0.41 0.42 16 45 H 0.09 1.60 6.56 -51.93 -0.34 1.25 16 46 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -34.81 380.33 -7.51 -42.32 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.27 Total: 9.77 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 1.41 Total: 16.38 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -1.35 Total: -55.69 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.00 Total: -34.92 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.81 -7.51 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345981921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.502 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds