Wall clock time and date at job start Tue Mar 31 2020 05:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00092 * 2 1 4 4 O 1.20820 * 119.99923 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99988 * 180.02562 * 3 2 1 6 6 N 1.46899 * 109.47342 * 175.59040 * 5 3 2 7 7 C 1.46902 * 111.00161 * 164.06816 * 6 5 3 8 8 C 1.52999 * 109.47186 * 293.95568 * 7 6 5 9 9 N 1.46902 * 109.47186 * 179.97438 * 8 7 6 10 10 C 1.47019 * 110.99785 * 46.31871 * 9 8 7 11 11 C 1.53096 * 109.25676 * 182.35190 * 10 9 8 12 12 O 1.43013 * 109.29192 * 303.21779 * 11 10 9 13 13 C 1.43014 * 113.74153 * 58.64947 * 12 11 10 14 14 C 1.47013 * 110.99901 * 170.00148 * 9 8 7 15 15 C 1.46900 * 110.99914 * 288.02325 * 6 5 3 16 16 C 1.50702 * 109.46960 * 159.62420 * 15 6 5 17 17 O 1.21291 * 120.00132 * 2.55600 * 16 15 6 18 18 N 1.34772 * 119.99643 * 182.55689 * 16 15 6 19 19 C 1.37106 * 119.99852 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00020 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99831 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00182 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99688 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47381 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47152 * 119.99628 * 23 21 19 26 26 H 1.48501 * 109.47240 * 239.99889 * 23 21 19 27 27 H 1.09001 * 109.47091 * 300.00022 * 1 2 3 28 28 H 1.09005 * 109.47193 * 59.99999 * 1 2 3 29 29 H 1.09002 * 109.47270 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47502 * 55.58847 * 5 3 2 31 31 H 1.08999 * 109.47264 * 295.59313 * 5 3 2 32 32 H 1.09001 * 109.47469 * 173.95191 * 7 6 5 33 33 H 1.08999 * 109.47019 * 53.95519 * 7 6 5 34 34 H 1.09002 * 109.46927 * 59.99931 * 8 7 6 35 35 H 1.08999 * 109.47102 * 299.99900 * 8 7 6 36 36 H 1.08994 * 109.47525 * 62.43740 * 10 9 8 37 37 H 1.08999 * 109.54503 * 302.30735 * 10 9 8 38 38 H 1.08999 * 109.51086 * 183.26059 * 11 10 9 39 39 H 1.09008 * 109.50664 * 63.17221 * 11 10 9 40 40 H 1.09005 * 109.50797 * 61.26050 * 13 12 11 41 41 H 1.08997 * 109.51245 * 181.35271 * 13 12 11 42 42 H 1.08996 * 109.51032 * 57.67384 * 14 9 8 43 43 H 1.09001 * 109.50660 * 297.53975 * 14 9 8 44 44 H 1.09004 * 109.47175 * 279.62517 * 15 6 5 45 45 H 1.08996 * 109.47260 * 39.62317 * 15 6 5 46 46 H 0.96995 * 120.00710 * 359.97438 * 18 16 15 47 47 H 0.96998 * 119.99657 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9831 2.6794 -0.1069 7 6 5.3956 2.8390 0.2635 8 6 5.5727 2.5182 1.7490 9 7 6.9853 2.6772 2.1193 10 6 7.5317 3.9335 1.5858 11 6 9.0170 4.0306 1.9439 12 8 9.1683 3.9327 3.3627 13 6 8.6478 2.7205 3.9150 14 6 7.1584 2.6106 3.5777 15 6 3.7302 3.2028 -1.4561 16 6 3.6849 4.7085 -1.4104 17 8 3.8932 5.2901 -0.3666 18 7 3.4129 5.4086 -2.5294 19 6 3.3711 6.7784 -2.4877 20 1 3.5558 7.2963 -1.5581 21 6 3.0902 7.5003 -3.6413 22 7 2.8650 6.8701 -4.7723 23 14 3.0326 9.3665 -3.5844 24 1 3.3198 9.8288 -2.2027 25 1 4.0498 9.9217 -4.5130 26 1 1.6829 9.8328 -3.9923 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.9593 0.7140 -0.8487 31 1 3.9528 0.8503 0.9260 32 1 5.7073 3.8661 0.0739 33 1 6.0060 2.1587 -0.3304 34 1 5.2611 1.4910 1.9385 35 1 4.9623 3.1985 2.3428 36 1 6.9963 4.7768 2.0219 37 1 7.4168 3.9500 0.5020 38 1 9.4124 4.9866 1.6009 39 1 9.5613 3.2178 1.4629 40 1 9.1807 1.8692 3.4913 41 1 8.7768 2.7287 4.9972 42 1 6.7706 1.6613 3.9473 43 1 6.6175 3.4327 4.0463 44 1 4.5292 2.8835 -2.1253 45 1 2.7766 2.8215 -1.8209 46 1 3.2467 4.9436 -3.3642 47 1 2.6693 7.3741 -5.5776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345981921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:16 Heat of formation + Delta-G solvation = -162.315181 kcal Electronic energy + Delta-G solvation = -29277.123526 eV Core-core repulsion = 25074.089888 eV Total energy + Delta-G solvation = -4203.033638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.59907 -40.67021 -40.15358 -38.42976 -37.36519 -36.42476 -35.82948 -33.27662 -32.26631 -31.16631 -30.67379 -28.62640 -27.71720 -26.75459 -25.12090 -24.84635 -22.74579 -21.72106 -21.19863 -20.91389 -19.90313 -18.75560 -18.15297 -17.84476 -17.46231 -17.30484 -17.09632 -16.61461 -16.47997 -16.21662 -16.05111 -15.97312 -15.61755 -15.46885 -15.12758 -14.86812 -14.68996 -14.29395 -14.08856 -13.84346 -13.60716 -13.38224 -13.23336 -13.20157 -12.96943 -12.89409 -12.59930 -12.41302 -12.35318 -12.29744 -12.13524 -11.76782 -11.75478 -11.50974 -11.43977 -11.41067 -10.65762 -10.34761 -9.99924 -9.48948 -9.31638 -8.46740 -5.95042 1.22864 1.34830 1.39215 1.53448 1.61681 2.06631 2.26829 2.49517 2.87303 2.98401 3.19877 3.40053 3.75937 3.84810 3.91858 4.01783 4.08113 4.12140 4.19764 4.20681 4.29280 4.32314 4.34116 4.34782 4.38864 4.41879 4.50346 4.55627 4.61407 4.71584 4.72452 4.82727 4.88469 4.90834 4.94875 5.05308 5.37756 5.40330 5.71641 5.75087 5.91160 6.03490 6.05131 6.18370 6.60814 6.83624 7.13570 7.56830 8.13474 8.71299 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.007171 B = 0.004119 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3903.421807 B = 6796.796547 C =10237.492447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.453 3.547 4 O -0.527 6.527 5 C 0.063 3.937 6 N -0.530 5.530 7 C 0.067 3.933 8 C 0.067 3.933 9 N -0.528 5.528 10 C 0.012 3.988 11 C 0.068 3.932 12 O -0.408 6.408 13 C 0.063 3.937 14 C 0.015 3.985 15 C 0.064 3.936 16 C 0.447 3.553 17 O -0.612 6.612 18 N -0.578 5.578 19 C -0.329 4.329 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.276 1.276 25 H -0.267 1.267 26 H -0.272 1.272 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.148 0.852 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.018 0.982 36 H 0.016 0.984 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.025 0.975 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -18.926 10.308 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.296 3.704 4 O -0.414 6.414 5 C -0.065 4.065 6 N -0.256 5.256 7 C -0.060 4.060 8 C -0.061 4.061 9 N -0.253 5.253 10 C -0.117 4.117 11 C -0.009 4.009 12 O -0.327 6.327 13 C -0.014 4.014 14 C -0.113 4.113 15 C -0.067 4.067 16 C 0.234 3.766 17 O -0.498 6.498 18 N -0.215 5.215 19 C -0.459 4.459 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.192 1.192 26 H -0.197 1.197 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.155 0.845 30 H 0.130 0.870 31 H 0.165 0.835 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.043 0.957 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.228 0.772 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.809 -18.155 11.059 22.321 hybrid contribution -1.082 1.306 -0.974 1.955 sum 5.727 -16.849 10.085 20.454 Atomic orbital electron populations 1.23489 0.75186 1.05611 1.02032 1.86465 1.24575 1.32468 1.84121 1.24231 0.92967 0.81196 0.71996 1.90765 1.67715 1.37757 1.45191 1.21826 0.86896 0.90023 1.07715 1.60816 1.21540 1.16997 1.26218 1.22148 0.85763 1.01833 0.96226 1.22072 0.87490 1.01926 0.94613 1.62409 1.16874 1.33889 1.12167 1.22857 0.96965 0.90502 1.01337 1.22718 0.93579 1.03407 0.81148 1.87954 1.81400 1.41321 1.22072 1.22841 0.91455 0.87013 1.00045 1.22909 0.98505 1.02629 0.87275 1.21683 1.02770 0.91893 0.90380 1.20688 0.81965 0.90256 0.83674 1.90477 1.55327 1.72377 1.31600 1.41917 1.62920 1.06572 1.10128 1.19652 1.47043 0.82624 0.96556 0.90615 1.26004 0.96311 1.04836 0.94103 1.69679 1.48287 1.38048 1.00307 0.84900 0.78353 0.77036 0.78204 1.20026 1.19235 1.19734 0.92567 0.92775 0.84469 0.86988 0.83498 0.92038 0.91459 0.87803 0.96344 0.96580 0.89412 0.87891 0.90770 0.90978 0.86598 0.87159 0.95687 0.89847 0.89225 0.77243 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -7.93 10.57 -51.39 -0.54 -8.47 16 3 C 0.45 12.53 7.39 71.23 0.53 13.06 16 4 O -0.53 -20.20 15.04 21.98 0.33 -19.87 16 5 C 0.06 1.38 5.43 85.56 0.46 1.85 16 6 N -0.53 -16.84 3.67 -905.37 -3.33 -20.17 16 7 C 0.07 1.91 3.84 86.30 0.33 2.24 16 8 C 0.07 1.65 5.24 86.30 0.45 2.11 16 9 N -0.53 -12.13 4.87 -895.20 -4.36 -16.49 16 10 C 0.01 0.31 4.94 86.31 0.43 0.74 16 11 C 0.07 1.50 7.01 72.01 0.50 2.01 16 12 O -0.41 -9.72 10.83 -148.98 -1.61 -11.33 16 13 C 0.06 1.09 7.01 72.02 0.50 1.60 16 14 C 0.01 0.29 5.63 86.32 0.49 0.78 16 15 C 0.06 2.31 5.01 85.56 0.43 2.74 16 16 C 0.45 22.37 7.49 87.66 0.66 23.03 16 17 O -0.61 -35.31 14.74 -3.06 -0.05 -35.36 16 18 N -0.58 -31.03 5.29 -306.98 -1.62 -32.65 16 19 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -51.10 13.05 21.66 0.28 -50.82 16 23 Si 0.99 44.39 29.55 68.60 2.03 46.42 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 28 H 0.05 1.08 8.13 -2.38 -0.02 1.06 16 29 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.74 8.05 -2.39 -0.02 1.72 16 31 H 0.15 2.32 5.94 -2.39 -0.01 2.31 16 32 H 0.06 2.26 4.83 -2.39 -0.01 2.25 16 33 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 34 H 0.10 1.90 6.28 -2.39 -0.01 1.88 16 35 H 0.02 0.58 8.08 -2.39 -0.02 0.56 16 36 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 2.40 6.05 -2.39 -0.01 2.38 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 2.50 7.99 -2.39 -0.02 2.48 16 45 H 0.09 3.23 6.56 -2.39 -0.02 3.22 16 46 H 0.39 20.17 7.90 -92.71 -0.73 19.44 16 47 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -79.70 380.33 -1.36 -81.06 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.26 Total: 34.67 kcal Atomic # 6 Polarization: 25.77 SS G_CDS: 7.26 Total: 33.02 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -9.03 Total: -120.13 kcal Atomic # 8 Polarization: -73.16 SS G_CDS: -1.87 Total: -75.03 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -79.70 -1.36 -81.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345981921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.259 kcal (2) G-P(sol) polarization free energy of solvation -79.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds