Wall clock time and date at job start Tue Mar 31 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99780 * 2 1 4 4 C 1.50700 * 109.47275 * 274.99921 * 3 2 1 5 5 H 1.08006 * 119.99738 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00182 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99938 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47170 * 59.99853 * 8 6 4 10 10 H 1.48500 * 109.46876 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47006 * 299.99735 * 8 6 4 12 12 S 1.65601 * 120.00420 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40102 * 156.45909 * 12 2 1 14 14 O 1.42097 * 106.40116 * 23.54033 * 12 2 1 15 15 N 1.65603 * 107.21427 * 269.99838 * 12 2 1 16 16 C 1.46499 * 119.99791 * 65.00127 * 15 12 2 17 17 C 1.50705 * 109.46730 * 164.99886 * 16 15 12 18 18 C 1.34331 * 125.80755 * 94.99746 * 17 16 15 19 19 N 1.38926 * 107.12220 * 179.73806 * 18 17 16 20 20 C 1.37486 * 139.53714 * 180.21625 * 19 18 17 21 21 C 1.30909 * 116.32362 * 180.02562 * 20 19 18 22 22 S 1.75773 * 109.81852 * 359.97438 * 21 20 19 23 23 C 1.35147 * 106.52943 * 0.24591 * 19 18 17 24 24 N 1.32356 * 108.82339 * 359.97438 * 23 19 18 25 25 H 1.08998 * 109.46866 * 269.99839 * 1 2 3 26 26 H 1.08996 * 109.47153 * 30.00253 * 1 2 3 27 27 H 1.09000 * 109.46988 * 150.00147 * 1 2 3 28 28 H 1.09000 * 109.47114 * 34.99712 * 3 2 1 29 29 H 1.09001 * 109.47292 * 155.00048 * 3 2 1 30 30 H 0.97003 * 120.00096 * 180.02562 * 7 6 4 31 31 H 0.97001 * 119.99784 * 244.99484 * 15 12 2 32 32 H 1.08992 * 109.47563 * 44.99992 * 16 15 12 33 33 H 1.08996 * 109.46953 * 284.99178 * 16 15 12 34 34 H 1.08002 * 126.44106 * 0.02562 * 18 17 16 35 35 H 1.08003 * 121.83610 * 0.04928 * 20 19 18 36 36 H 1.08004 * 125.08820 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9282 1.1939 -2.2332 6 6 2.9996 2.9510 -1.6663 7 7 3.5015 3.6480 -0.6705 8 14 3.1774 3.5673 -3.4208 9 1 1.8308 3.7726 -4.0122 10 1 3.9189 4.8539 -3.4206 11 1 3.9233 2.5657 -4.2241 12 16 2.2931 -1.4341 -0.0006 13 8 3.5760 -1.1564 -0.5450 14 8 1.4115 -2.4062 -0.5455 15 7 2.5382 -1.8592 1.5810 16 6 1.3947 -2.1788 2.4392 17 6 1.8803 -2.8757 3.6841 18 6 2.1486 -2.2862 4.8609 19 7 2.5608 -3.2850 5.7342 20 6 2.9728 -3.4302 7.0378 21 6 3.2714 -4.6460 7.4202 22 16 3.0403 -5.7647 6.0842 23 6 2.5278 -4.4426 5.0374 24 7 2.1200 -4.1874 3.8044 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6500 2.0043 0.5894 29 1 3.1857 1.1178 0.4343 30 1 3.9643 4.4821 -0.8470 31 1 3.4389 -1.8967 1.9391 32 1 0.7081 -2.8324 1.9013 33 1 0.8795 -1.2589 2.7154 34 1 2.0563 -1.2342 5.0872 35 1 3.0458 -2.5875 7.7094 36 1 3.6092 -4.9206 8.4086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348349159.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:14 Heat of formation + Delta-G solvation = 33.682226 kcal Electronic energy + Delta-G solvation = -23356.855953 eV Core-core repulsion = 19710.735042 eV Total energy + Delta-G solvation = -3646.120911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.061 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.93051 -37.29796 -36.52663 -35.46315 -35.08812 -34.73765 -32.40820 -31.06940 -29.81454 -27.74693 -25.83965 -25.00520 -24.39213 -22.25953 -21.13827 -20.81829 -18.88596 -18.68652 -17.28149 -16.67441 -16.47489 -16.35545 -16.20408 -15.77562 -15.16519 -14.96693 -14.65053 -14.21739 -13.73237 -13.59763 -13.25877 -13.23010 -12.84614 -12.28537 -12.14413 -12.12082 -11.65798 -11.56019 -11.44474 -11.31035 -11.13341 -11.02234 -10.81879 -10.68466 -10.47399 -10.37127 -10.01109 -9.75727 -9.32562 -9.15785 -8.42090 -8.05392 -8.02275 -6.04549 -4.08167 0.53633 0.54352 1.25634 1.26084 1.87714 2.20787 2.53734 3.35797 3.38979 3.44190 3.67618 4.04104 4.17251 4.28176 4.47261 4.59730 4.75078 4.94669 5.05907 5.14318 5.31135 5.36338 5.55720 5.68802 5.71200 5.97491 6.02311 6.19436 6.34463 6.49765 6.59547 7.13389 7.28734 7.45023 7.46230 7.64739 7.93335 8.23003 8.94107 9.56941 11.04070 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.002718 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.483528 B =10297.772813 C =10712.284470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.996 5.996 3 C 0.258 3.742 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.274 1.274 12 S 2.783 3.217 13 O -0.962 6.962 14 O -0.995 6.995 15 N -1.129 6.129 16 C 0.207 3.793 17 C 0.042 3.958 18 C -0.030 4.030 19 N -0.410 5.410 20 C 0.053 3.947 21 C -0.226 4.226 22 S 0.186 5.814 23 C 0.133 3.867 24 N -0.439 5.439 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.413 0.587 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.190 0.810 35 H 0.183 0.817 36 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 -13.840 20.662 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.839 5.839 3 C 0.136 3.864 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.791 3.209 13 O -0.946 6.946 14 O -0.978 6.978 15 N -0.888 5.888 16 C 0.079 3.921 17 C -0.090 4.090 18 C -0.163 4.163 19 N -0.090 5.090 20 C -0.076 4.076 21 C -0.363 4.363 22 S 0.435 5.565 23 C -0.233 4.233 24 N -0.163 5.163 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.246 0.754 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.207 0.793 35 H 0.200 0.800 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.148 -16.051 19.119 25.161 hybrid contribution 0.434 2.799 0.555 2.886 sum -2.713 -13.252 19.674 23.876 Atomic orbital electron populations 1.21386 0.80181 1.03613 1.00186 1.57626 1.14292 1.23309 1.88703 1.19040 0.91018 0.78749 0.97619 1.21478 1.36065 1.06267 0.93008 0.92188 1.24925 0.95115 0.96511 0.97468 1.69906 1.37444 1.15317 1.30980 0.86575 0.78301 0.77965 0.84728 1.20175 1.21213 1.19973 1.01920 0.73418 0.72904 0.72699 1.93645 1.40689 1.84868 1.75407 1.93528 1.67574 1.60042 1.76682 1.56275 1.14313 1.86039 1.32132 1.19389 0.88036 0.98018 0.86623 1.20691 1.03929 0.89383 0.95036 1.22721 1.09975 0.94399 0.89252 1.43926 1.46843 1.09096 1.09113 1.20410 1.02423 1.00181 0.84573 1.25113 1.10799 0.95091 1.05320 1.84858 1.72255 1.01776 0.97618 1.26305 1.11033 0.91685 0.94314 1.70551 1.17563 1.15590 1.12563 0.94299 0.90371 0.91462 0.94705 0.94438 0.92680 0.75408 0.88803 0.89947 0.79315 0.80008 0.78652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 10.68 59.85 0.64 2.19 16 2 N -1.00 -20.42 3.23 -123.05 -0.40 -20.82 16 3 C 0.26 6.40 5.08 -5.19 -0.03 6.37 16 4 C -0.53 -14.89 9.38 -34.44 -0.32 -15.21 16 5 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 S 2.78 56.27 6.10 -107.50 -0.66 55.62 16 13 O -0.96 -23.55 17.11 -57.17 -0.98 -24.53 16 14 O -0.99 -21.32 16.21 -57.17 -0.93 -22.24 16 15 N -1.13 -17.77 6.05 -11.66 -0.07 -17.85 16 16 C 0.21 2.75 6.78 -5.19 -0.04 2.71 16 17 C 0.04 0.55 6.45 -83.08 -0.54 0.01 16 18 C -0.03 -0.32 11.93 -15.71 -0.19 -0.51 16 19 N -0.41 -4.20 3.19 -63.77 -0.20 -4.40 16 20 C 0.05 0.34 11.26 -16.71 -0.19 0.15 16 21 C -0.23 -1.16 11.11 29.04 0.32 -0.83 16 22 S 0.19 1.51 23.37 -107.50 -2.51 -1.00 16 23 C 0.13 1.64 8.93 -88.71 -0.79 0.85 16 24 N -0.44 -6.57 11.33 -9.77 -0.11 -6.68 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 27 H 0.07 1.08 7.02 -51.93 -0.36 0.71 16 28 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 29 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.41 6.11 8.64 -34.47 -0.30 5.81 16 32 H 0.09 1.29 7.75 -51.93 -0.40 0.89 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.19 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.18 0.55 8.06 -52.48 -0.42 0.13 16 36 H 0.20 0.27 8.06 -52.48 -0.42 -0.16 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -37.54 341.56 -10.17 -47.72 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -3.96 Total: 0.13 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.22 Total: -2.61 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -0.04 Total: -75.17 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -1.90 Total: -46.78 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 57.78 SS G_CDS: -3.17 Total: 54.62 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.54 -10.17 -47.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348349159.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.400 kcal (2) G-P(sol) polarization free energy of solvation -37.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds