Wall clock time and date at job start Tue Mar 31 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48500 * 109.47119 * 269.99788 * 3 2 1 5 5 H 1.48502 * 109.46965 * 29.99739 * 3 2 1 6 6 H 1.48501 * 109.47455 * 149.99530 * 3 2 1 7 7 C 1.37873 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99819 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00068 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99943 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00212 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.99757 * 179.97438 * 11 10 9 14 14 C 1.52996 * 109.46754 * 179.97438 * 13 11 10 15 15 N 1.46506 * 109.47045 * 179.97438 * 14 13 11 16 16 S 1.65597 * 120.00079 * 164.72323 * 15 14 13 17 17 O 1.42100 * 106.40448 * 178.54099 * 16 15 14 18 18 O 1.42103 * 106.40365 * 311.46606 * 16 15 14 19 19 C 1.76197 * 107.21750 * 65.00357 * 16 15 14 20 20 C 1.38251 * 119.97325 * 269.72774 * 19 16 15 21 21 C 1.38203 * 120.02035 * 179.72481 * 20 19 16 22 22 C 1.38460 * 119.97576 * 0.56789 * 21 20 19 23 23 F 1.35107 * 120.02204 * 179.67971 * 22 21 20 24 24 C 1.38448 * 119.95116 * 359.70537 * 22 21 20 25 25 C 1.38203 * 119.97488 * 0.02562 * 24 22 21 26 26 H 0.97002 * 120.00184 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47186 * 60.00370 * 9 7 2 28 28 H 1.09003 * 109.47193 * 299.99485 * 9 7 2 29 29 H 0.97000 * 119.99521 * 359.97438 * 10 9 7 30 30 H 1.08997 * 109.46918 * 60.00080 * 13 11 10 31 31 H 1.08996 * 109.46854 * 300.00038 * 13 11 10 32 32 H 1.08999 * 109.47565 * 60.00266 * 14 13 11 33 33 H 1.09000 * 109.47473 * 300.00267 * 14 13 11 34 34 H 0.97005 * 119.99811 * 345.00302 * 15 14 13 35 35 H 1.07988 * 119.98842 * 359.97322 * 20 19 16 36 36 H 1.08007 * 120.00894 * 180.25062 * 21 20 19 37 37 H 1.07993 * 120.01518 * 179.97438 * 24 22 21 38 38 H 1.08001 * 119.99036 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3249 -2.8215 0.0020 12 8 6.1131 -1.8997 0.0025 13 6 5.8272 -4.2424 0.0024 14 6 7.3572 -4.2423 0.0029 15 7 7.8456 -5.6236 0.0040 16 16 9.4260 -5.9433 -0.3732 17 8 9.5913 -7.3493 -0.2508 18 8 9.7055 -5.2291 -1.5695 19 6 10.4204 -5.2141 0.8854 20 6 10.8696 -3.9142 0.7443 21 6 11.6448 -3.3393 1.7335 22 6 11.9814 -4.0697 2.8607 23 9 12.7446 -3.5108 3.8253 24 6 11.5357 -5.3732 2.9983 25 6 10.7559 -5.9442 2.0104 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6800 0.8911 28 1 3.8752 -0.6804 -0.8889 29 1 3.3695 -3.3125 0.0010 30 1 5.4645 -4.7562 -0.8878 31 1 5.4632 -4.7561 0.8922 32 1 7.7203 -3.7283 0.8929 33 1 7.7208 -3.7286 -0.8870 34 1 7.2421 -6.3512 0.2217 35 1 10.6113 -3.3465 -0.1373 36 1 11.9923 -2.3225 1.6250 37 1 11.7979 -5.9439 3.8768 38 1 10.4077 -6.9609 2.1176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350944310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:04 Heat of formation + Delta-G solvation = -135.859451 kcal Electronic energy + Delta-G solvation = -24857.329475 eV Core-core repulsion = 20741.183853 eV Total energy + Delta-G solvation = -4116.145622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.53578 -39.42744 -39.21556 -37.55640 -36.16410 -35.90019 -34.37489 -32.43826 -31.76266 -31.29195 -30.56310 -27.85118 -24.02018 -23.66195 -23.64372 -21.82680 -20.21377 -19.76417 -18.69809 -18.12944 -17.53404 -17.25271 -17.03434 -16.39951 -16.18643 -15.76631 -15.68166 -15.27354 -15.17553 -14.70899 -14.18374 -14.14236 -14.01462 -13.81879 -13.75723 -13.16926 -13.07335 -12.52172 -12.47508 -12.38799 -12.35872 -12.23802 -11.88709 -11.69896 -11.62476 -11.34142 -11.05880 -10.81328 -10.02430 -9.85151 -9.72673 -9.66167 -9.55749 -9.36381 -8.83373 -8.25307 -6.26314 -4.29174 -0.05039 0.23778 0.63703 2.53606 2.88321 3.08512 3.23256 3.30112 3.37379 3.41931 3.58932 3.83733 3.95039 4.22016 4.28856 4.29615 4.55907 4.62938 4.78849 4.96496 5.09100 5.09928 5.18054 5.26011 5.29038 5.44109 5.50660 5.52575 5.53350 5.72480 5.88737 6.21253 6.61567 6.73463 7.00196 7.11584 7.32240 8.04621 8.42598 8.67781 8.81477 9.33357 10.85569 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.002517 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.343925 B =11119.931849 C =12294.879502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.219 3.781 10 N -0.703 5.703 11 C 0.502 3.498 12 O -0.559 6.559 13 C -0.149 4.149 14 C 0.130 3.870 15 N -1.117 6.117 16 S 2.703 3.297 17 O -0.958 6.958 18 O -0.950 6.950 19 C -0.693 4.693 20 C 0.013 3.987 21 C -0.174 4.174 22 C 0.155 3.845 23 F -0.130 7.130 24 C -0.178 4.178 25 C 0.011 3.989 26 H 0.268 0.732 27 H 0.026 0.974 28 H 0.022 0.978 29 H 0.398 0.602 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.420 0.580 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.033 -13.848 4.618 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.351 5.351 11 C 0.286 3.714 12 O -0.439 6.439 13 C -0.191 4.191 14 C 0.004 3.996 15 N -0.878 5.878 16 S 2.791 3.209 17 O -0.949 6.949 18 O -0.940 6.940 19 C -0.779 4.779 20 C -0.006 4.006 21 C -0.193 4.193 22 C 0.136 3.864 23 F -0.109 7.109 24 C -0.197 4.197 25 C -0.008 4.008 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.232 0.768 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.255 0.745 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 22.861 -13.314 3.905 26.742 hybrid contribution -0.047 0.795 1.074 1.337 sum 22.814 -12.519 4.979 26.495 Atomic orbital electron populations 1.69877 1.06236 1.27498 1.49259 1.24803 0.94797 0.99218 0.93822 0.86810 0.80524 0.83207 0.79087 1.19806 1.20892 1.18526 1.21082 0.88493 0.95244 1.53521 0.90233 1.19519 0.95306 0.78585 0.96874 1.46195 1.05669 1.11228 1.72038 1.20284 0.83338 0.90337 0.77401 1.90672 1.55482 1.46418 1.51312 1.21791 0.95552 0.96485 1.05229 1.21088 0.94602 0.80064 1.03880 1.55497 1.28426 1.15300 1.88548 1.01685 0.72334 0.73142 0.73760 1.93600 1.85360 1.28980 1.86915 1.93618 1.83917 1.74509 1.41967 1.31099 1.21485 1.06684 1.18614 1.20915 0.90286 0.92011 0.97421 1.21345 1.02356 1.01799 0.93826 1.18035 0.90300 0.92017 0.86090 1.91559 1.72483 1.85256 1.61561 1.21285 1.02160 0.94345 1.01931 1.20800 0.91327 0.99059 0.89643 0.92206 0.95632 0.96032 0.76840 0.88100 0.88334 0.90689 0.89040 0.74544 0.82826 0.83454 0.83651 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.55 -14.47 9.83 -34.44 -0.34 -14.81 16 8 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 9 C 0.22 5.14 4.50 -5.19 -0.02 5.12 16 10 N -0.70 -13.01 5.55 -61.47 -0.34 -13.35 16 11 C 0.50 8.36 7.83 -10.98 -0.09 8.28 16 12 O -0.56 -11.36 15.98 5.56 0.09 -11.27 16 13 C -0.15 -1.56 5.84 -27.88 -0.16 -1.72 16 14 C 0.13 1.30 5.51 -4.04 -0.02 1.28 16 15 N -1.12 -8.58 6.00 -10.61 -0.06 -8.64 16 16 S 2.70 25.07 5.74 -107.50 -0.62 24.45 16 17 O -0.96 -10.59 17.28 -57.17 -0.99 -11.58 16 18 O -0.95 -11.78 16.74 -57.17 -0.96 -12.74 16 19 C -0.69 -5.96 5.95 -39.57 -0.24 -6.19 16 20 C 0.01 0.11 9.52 -39.59 -0.38 -0.27 16 21 C -0.17 -1.43 10.03 -39.51 -0.40 -1.83 16 22 C 0.16 1.32 7.30 -39.42 -0.29 1.04 16 23 F -0.13 -1.18 17.27 2.25 0.04 -1.14 16 24 C -0.18 -1.31 10.03 -39.52 -0.40 -1.71 16 25 C 0.01 0.08 9.52 -39.59 -0.38 -0.29 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 28 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 29 H 0.40 6.34 8.32 -40.82 -0.34 6.00 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 34 H 0.42 2.22 8.65 -34.47 -0.30 1.92 16 35 H 0.15 1.19 7.61 -52.49 -0.40 0.79 16 36 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.15 0.84 7.62 -52.49 -0.40 0.44 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -35.58 349.38 -8.56 -44.15 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.29 Total: 2.87 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.80 Total: -9.07 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.37 Total: -47.18 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.86 Total: -35.60 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 16 Polarization: 25.07 SS G_CDS: -0.62 Total: 24.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.58 -8.56 -44.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350944310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.713 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds