Wall clock time and date at job start Tue Mar 31 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48500 * 109.47119 * 269.99788 * 3 2 1 5 5 H 1.48502 * 109.46965 * 29.99739 * 3 2 1 6 6 H 1.48501 * 109.47455 * 149.99530 * 3 2 1 7 7 C 1.37873 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99819 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00068 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99943 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00212 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.99757 * 179.97438 * 11 10 9 14 14 C 1.52996 * 109.46754 * 179.97438 * 13 11 10 15 15 N 1.46506 * 109.47045 * 179.97438 * 14 13 11 16 16 S 1.65597 * 120.00079 * 164.72323 * 15 14 13 17 17 O 1.42100 * 106.40448 * 178.54099 * 16 15 14 18 18 O 1.42103 * 106.40365 * 311.46606 * 16 15 14 19 19 C 1.76197 * 107.21750 * 65.00357 * 16 15 14 20 20 C 1.38251 * 119.97325 * 269.72774 * 19 16 15 21 21 C 1.38203 * 120.02035 * 179.72481 * 20 19 16 22 22 C 1.38460 * 119.97576 * 0.56789 * 21 20 19 23 23 F 1.35107 * 120.02204 * 179.67971 * 22 21 20 24 24 C 1.38448 * 119.95116 * 359.70537 * 22 21 20 25 25 C 1.38203 * 119.97488 * 0.02562 * 24 22 21 26 26 H 0.97002 * 120.00184 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47186 * 60.00370 * 9 7 2 28 28 H 1.09003 * 109.47193 * 299.99485 * 9 7 2 29 29 H 0.97000 * 119.99521 * 359.97438 * 10 9 7 30 30 H 1.08997 * 109.46918 * 60.00080 * 13 11 10 31 31 H 1.08996 * 109.46854 * 300.00038 * 13 11 10 32 32 H 1.08999 * 109.47565 * 60.00266 * 14 13 11 33 33 H 1.09000 * 109.47473 * 300.00267 * 14 13 11 34 34 H 0.97005 * 119.99811 * 345.00302 * 15 14 13 35 35 H 1.07988 * 119.98842 * 359.97322 * 20 19 16 36 36 H 1.08007 * 120.00894 * 180.25062 * 21 20 19 37 37 H 1.07993 * 120.01518 * 179.97438 * 24 22 21 38 38 H 1.08001 * 119.99036 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3249 -2.8215 0.0020 12 8 6.1131 -1.8997 0.0025 13 6 5.8272 -4.2424 0.0024 14 6 7.3572 -4.2423 0.0029 15 7 7.8456 -5.6236 0.0040 16 16 9.4260 -5.9433 -0.3732 17 8 9.5913 -7.3493 -0.2508 18 8 9.7055 -5.2291 -1.5695 19 6 10.4204 -5.2141 0.8854 20 6 10.8696 -3.9142 0.7443 21 6 11.6448 -3.3393 1.7335 22 6 11.9814 -4.0697 2.8607 23 9 12.7446 -3.5108 3.8253 24 6 11.5357 -5.3732 2.9983 25 6 10.7559 -5.9442 2.0104 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6800 0.8911 28 1 3.8752 -0.6804 -0.8889 29 1 3.3695 -3.3125 0.0010 30 1 5.4645 -4.7562 -0.8878 31 1 5.4632 -4.7561 0.8922 32 1 7.7203 -3.7283 0.8929 33 1 7.7208 -3.7286 -0.8870 34 1 7.2421 -6.3512 0.2217 35 1 10.6113 -3.3465 -0.1373 36 1 11.9923 -2.3225 1.6250 37 1 11.7979 -5.9439 3.8768 38 1 10.4077 -6.9609 2.1176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350944310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:03 Heat of formation + Delta-G solvation = -164.262256 kcal Electronic energy + Delta-G solvation = -24858.561113 eV Core-core repulsion = 20741.183853 eV Total energy + Delta-G solvation = -4117.377260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.19149 -40.59506 -40.02408 -38.39226 -37.00595 -36.79171 -36.03672 -34.38601 -32.35063 -31.91995 -31.64109 -29.57047 -25.20375 -24.31058 -24.28798 -23.43970 -21.45371 -20.69121 -19.43225 -19.10888 -18.67873 -18.23181 -17.84684 -17.54079 -17.10144 -16.86588 -16.81065 -16.53441 -15.88529 -15.78844 -15.55120 -15.27344 -14.75463 -14.73524 -14.48591 -14.46459 -14.22144 -14.02728 -13.74787 -13.35682 -13.26985 -13.16570 -13.10710 -12.77015 -12.61914 -12.49757 -12.27724 -12.07505 -11.92134 -11.63317 -10.90592 -10.82082 -10.55164 -10.31738 -10.29643 -9.88365 -8.38542 -6.45258 -0.74983 -0.44479 0.04639 1.34186 1.36848 1.48388 1.77294 1.82458 2.21820 2.29265 2.58254 2.72734 2.97345 2.98046 3.22269 3.59028 3.69413 3.74875 4.07172 4.07960 4.15483 4.21302 4.47869 4.52582 4.63163 4.73567 4.83365 4.84567 4.91964 4.92116 4.94120 5.07254 5.10315 5.29237 5.55876 5.62162 6.09929 6.10585 6.56800 6.87861 7.17672 7.45045 8.76136 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.002517 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.343925 B =11119.931849 C =12294.879502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.025 3.975 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.230 3.770 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.597 6.597 13 C -0.136 4.136 14 C 0.130 3.870 15 N -1.102 6.102 16 S 2.723 3.277 17 O -0.974 6.974 18 O -0.984 6.984 19 C -0.696 4.696 20 C -0.001 4.001 21 C -0.181 4.181 22 C 0.142 3.858 23 F -0.136 7.136 24 C -0.175 4.175 25 C 0.008 3.992 26 H 0.272 0.728 27 H 0.014 0.986 28 H 0.011 0.989 29 H 0.411 0.589 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.433 0.567 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.170 0.830 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.062 -14.942 5.321 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.105 3.895 10 N -0.356 5.356 11 C 0.287 3.713 12 O -0.479 6.479 13 C -0.177 4.177 14 C 0.003 3.997 15 N -0.865 5.865 16 S 2.813 3.187 17 O -0.964 6.964 18 O -0.974 6.974 19 C -0.784 4.784 20 C -0.020 4.020 21 C -0.200 4.200 22 C 0.122 3.878 23 F -0.114 7.114 24 C -0.194 4.194 25 C -0.011 4.011 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.247 0.753 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.272 0.728 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.187 0.813 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 23.881 -14.469 4.597 28.298 hybrid contribution -0.349 1.065 0.884 1.427 sum 23.532 -13.403 5.481 27.631 Atomic orbital electron populations 1.69984 1.07738 1.28560 1.50874 1.25614 0.95516 1.02725 0.93707 0.85864 0.79309 0.79367 0.79373 1.19148 1.20079 1.18236 1.21324 0.90131 0.94528 1.52347 0.92152 1.19094 0.93210 0.81439 0.95709 1.46046 1.07031 1.09609 1.72875 1.21280 0.82002 0.92589 0.75408 1.90657 1.56178 1.48460 1.52626 1.21788 0.95523 0.92208 1.08180 1.20979 0.94367 0.80888 1.03417 1.55159 1.28102 1.14866 1.88409 1.00848 0.72361 0.72275 0.73205 1.93575 1.85710 1.29973 1.87180 1.93577 1.84542 1.75084 1.44205 1.30973 1.21793 1.06793 1.18805 1.21044 0.90818 0.92357 0.97815 1.21529 1.02220 1.02520 0.93730 1.18250 0.90679 0.92703 0.86149 1.91544 1.72702 1.85434 1.61745 1.21579 1.01296 0.93965 1.02595 1.21107 0.91016 0.99895 0.89085 0.91928 0.96841 0.97103 0.75324 0.85521 0.84814 0.90566 0.90513 0.72848 0.82596 0.82290 0.81288 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 13.96 21.45 0.30 -54.50 16 2 C 0.02 1.36 5.47 84.65 0.46 1.82 16 3 Si 0.94 43.07 27.47 68.60 1.88 44.95 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.26 -11.66 6.54 99.48 0.65 -11.00 16 7 C -0.55 -29.06 9.83 25.60 0.25 -28.80 16 8 H 0.06 3.37 7.84 -2.91 -0.02 3.34 16 9 C 0.23 10.67 4.50 85.63 0.38 11.06 16 10 N -0.71 -25.25 5.55 -466.77 -2.59 -27.84 16 11 C 0.50 15.80 7.83 87.66 0.69 16.48 16 12 O -0.60 -23.81 15.98 -3.04 -0.05 -23.85 16 13 C -0.14 -2.42 5.84 29.85 0.17 -2.25 16 14 C 0.13 2.33 5.51 86.38 0.48 2.81 16 15 N -1.10 -14.21 6.00 -187.48 -1.12 -15.34 16 16 S 2.72 46.61 5.74 -56.49 -0.32 46.29 16 17 O -0.97 -19.77 17.28 -128.00 -2.21 -21.98 16 18 O -0.98 -23.84 16.74 -128.00 -2.14 -25.99 16 19 C -0.70 -10.99 5.95 22.28 0.13 -10.86 16 20 C 0.00 -0.02 9.52 22.26 0.21 0.19 16 21 C -0.18 -2.84 10.03 22.31 0.22 -2.62 16 22 C 0.14 2.24 7.30 22.37 0.16 2.40 16 23 F -0.14 -2.33 17.27 44.97 0.78 -1.55 16 24 C -0.18 -2.21 10.03 22.31 0.22 -1.99 16 25 C 0.01 0.10 9.52 22.26 0.21 0.32 16 26 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 28 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 29 H 0.41 12.45 8.32 -92.71 -0.77 11.68 16 30 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 33 H 0.08 1.64 7.70 -2.39 -0.02 1.62 16 34 H 0.43 3.14 8.65 -96.74 -0.84 2.30 16 35 H 0.16 2.41 7.61 -2.92 -0.02 2.39 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.17 1.42 7.62 -2.91 -0.02 1.39 16 Total: -1.00 -76.81 349.38 -2.42 -79.23 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.54 Total: 12.00 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 3.60 Total: -11.43 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -3.41 Total: -97.67 kcal Atomic # 8 Polarization: -67.42 SS G_CDS: -4.40 Total: -71.82 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.78 Total: -1.55 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 16 Polarization: 46.61 SS G_CDS: -0.32 Total: 46.29 kcal Total: -76.81 -2.42 -79.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350944310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.033 kcal (2) G-P(sol) polarization free energy of solvation -76.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds